File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/2486075d401dfdb6747ab01859e243/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:19:38
                             Started mapping on |	Jun 08 10:26:14
                                    Finished on |	Jun 08 11:29:59
       Mapping speed, Million of reads per hour |	278.46

                          Number of input reads |	295865038
                      Average input read length |	267
                                    UNIQUE READS:
                   Uniquely mapped reads number |	278322753
                        Uniquely mapped reads % |	94.07%
                          Average mapped length |	266.94
                       Number of splices: Total |	287915844
            Number of splices: Annotated (sjdb) |	282619095
                       Number of splices: GT/AG |	283917173
                       Number of splices: GC/AG |	2325265
                       Number of splices: AT/AC |	240856
               Number of splices: Non-canonical |	1432550
                      Mismatch rate per base, % |	0.17%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.15
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.85
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	13797454
             % of reads mapped to multiple loci |	4.66%
        Number of reads mapped to too many loci |	559120
             % of reads mapped to too many loci |	0.19%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2800244
                 % of reads unmapped: too short |	0.95%
                Number of reads unmapped: other |	385467
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%