Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/123bc858f773c1022182b283dbfe54/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/123bc858f773c1022182b283dbfe54/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/0f71a0c154cf351fb20ae48f0bca50/tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00582_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00582_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:37:36.101 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:37:36 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00582_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00582_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:37:36 GMT 2026] Executing as ?@nf-3d123bc858f773c1022182b283dbfe54-b7b85-5x22p on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:37:36 MarkDuplicates Start of doWork freeMemory: 105492360; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:37:36 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:37:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,342,707
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 3152 as yet unmatched pairs. 352 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,825,406
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 5995 as yet unmatched pairs. 433 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,473,393
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 8959 as yet unmatched pairs. 559 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,263,592
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 11368 as yet unmatched pairs. 501 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:11,750,147
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 13514 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:15,728,318
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 16063 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:16,970,397
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 18331 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:19,385,548
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 21587 as yet unmatched pairs. 867 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,829,009
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 26163 as yet unmatched pairs. 2976 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:21,872,643
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 28275 as yet unmatched pairs. 2619 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:23,082,345
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 28927 as yet unmatched pairs. 573 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:25,485,685
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 30583 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:27,102,672
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 33088 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:29,148,733
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 36128 as yet unmatched pairs. 596 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:31,685,661
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 39816 as yet unmatched pairs. 1510 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:32,938,328
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 41246 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:36,172,501
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 44465 as yet unmatched pairs. 939 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:39,336,219
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 46189 as yet unmatched pairs. 359 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:41,009,503
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 48417 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:43,667,952
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 50942 as yet unmatched pairs. 314 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:46,192,190
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 53316 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:53,069,835
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 59120 as yet unmatched pairs. 3601 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:58,782,427
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 62153 as yet unmatched pairs. 4158 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:66,963,093
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 60430 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:85,580,920
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 75462 as yet unmatched pairs. 13064 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:88,771,447
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 65208 as yet unmatched pairs. 327 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:99,689,608
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 67231 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:109,924,112
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 70187 as yet unmatched pairs. 629 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:113,973,250
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 72205 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:119,727,063
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 74775 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:120,808,556
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 76902 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:146,077,581
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 78122 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:148,952,828
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 79581 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,620
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 80705 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:150,553,475
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 83361 as yet unmatched pairs. 1073 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:150,966,847
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 85185 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:152,215,670
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 87858 as yet unmatched pairs. 588 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,459
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 93712 as yet unmatched pairs. 4190 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:154,946,484
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 92789 as yet unmatched pairs. 1140 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:155,438,512
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 94528 as yet unmatched pairs. 246 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:156,126,878
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 102745 as yet unmatched pairs. 6086 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,683
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 103491 as yet unmatched pairs. 4127 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:156,978,354
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 102361 as yet unmatched pairs. 555 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:160,496,271
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 104312 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:161,626,284
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 106729 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:169,708,453
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 108835 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:179,882,807
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 111209 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:183,136,440
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 114431 as yet unmatched pairs. 932 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:192,576,295
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 116416 as yet unmatched pairs. 844 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:201,490,232
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 126913 as yet unmatched pairs. 9155 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:202,562,885
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 120824 as yet unmatched pairs. 915 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:203,797,936
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 122174 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:206,476,335
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 124352 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:209,777,407
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 126725 as yet unmatched pairs. 199 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:223,717,794
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 129254 as yet unmatched pairs. 427 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:226,735,772
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 132689 as yet unmatched pairs. 1776 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:229,558,260
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 133799 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr1:235,979,027
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 137053 as yet unmatched pairs. 600 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr1:244,863,677
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 143632 as yet unmatched pairs. 4700 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 3s. Last read position: chr2:8,747,957
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 142055 as yet unmatched pairs. 141545 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:20,204,242
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 144480 as yet unmatched pairs. 143952 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:25,743,336
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 146601 as yet unmatched pairs. 146061 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:27,241,132
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 149687 as yet unmatched pairs. 149144 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:28,783,910
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 156234 as yet unmatched pairs. 155688 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,261
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 209320 as yet unmatched pairs. 149821 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 851617 as yet unmatched pairs. 114611 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 1280069 as yet unmatched pairs. 90982 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 1286001 as yet unmatched pairs. 90744 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:36,925,133
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 1374184 as yet unmatched pairs. 87353 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,522
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 1370428 as yet unmatched pairs. 83560 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:46,380,449
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 1367350 as yet unmatched pairs. 80479 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:54,631,068
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 1365985 as yet unmatched pairs. 79099 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:55,867,095
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 1362251 as yet unmatched pairs. 75358 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:68,380,420
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 1359768 as yet unmatched pairs. 72872 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:73,218,861
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 1357529 as yet unmatched pairs. 70630 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:74,368,128
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 1355503 as yet unmatched pairs. 68604 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:85,435,424
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 1353089 as yet unmatched pairs. 66182 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:95,087,402
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 1350872 as yet unmatched pairs. 63963 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:97,091,529
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 1348216 as yet unmatched pairs. 61303 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:102,338,211
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 1346190 as yet unmatched pairs. 59267 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:109,794,465
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 1344223 as yet unmatched pairs. 57295 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:113,197,797
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 1343597 as yet unmatched pairs. 56668 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:127,720,018
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 1340878 as yet unmatched pairs. 53937 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:136,114,989
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 1341420 as yet unmatched pairs. 54445 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:156,329,502
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 1337852 as yet unmatched pairs. 50871 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 3s. Last read position: chr2:168,958,017
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 1333640 as yet unmatched pairs. 46655 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:177,215,541
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 1333399 as yet unmatched pairs. 46408 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:186,602,021
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 1329991 as yet unmatched pairs. 42997 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:189,005,375
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 1331442 as yet unmatched pairs. 44445 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:191,835,841
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 1325178 as yet unmatched pairs. 38181 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:202,034,694
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 1322409 as yet unmatched pairs. 35380 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:209,714,017
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 1319644 as yet unmatched pairs. 32589 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,850
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 1323167 as yet unmatched pairs. 36098 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,262
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 1316929 as yet unmatched pairs. 29852 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,649
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 1315073 as yet unmatched pairs. 27986 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:217,836,082
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 1316346 as yet unmatched pairs. 29253 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:217,907,221
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 1311627 as yet unmatched pairs. 24532 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:219,384,365
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 1306220 as yet unmatched pairs. 19123 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:219,425,690
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 1314297 as yet unmatched pairs. 27197 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:222,521,852
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 1299814 as yet unmatched pairs. 12698 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:231,460,477
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 1297812 as yet unmatched pairs. 10668 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:236,324,686
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 1295092 as yet unmatched pairs. 7933 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:237,369,014
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 1295069 as yet unmatched pairs. 7900 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:239,108,085
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 1290689 as yet unmatched pairs. 3515 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:241,496,511
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 1288230 as yet unmatched pairs. 1043 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr3:9,684,954
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 1285653 as yet unmatched pairs. 67175 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr3:12,840,177
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 1283010 as yet unmatched pairs. 64529 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:15,332,365
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1280766 as yet unmatched pairs. 62277 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:32,391,940
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 1278263 as yet unmatched pairs. 59763 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:39,143,011
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 1276247 as yet unmatched pairs. 57746 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr3:42,659,316
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 1272972 as yet unmatched pairs. 54467 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:47,007,571
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 1270833 as yet unmatched pairs. 52320 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr3:48,409,608
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 1268427 as yet unmatched pairs. 49905 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 3s. Last read position: chr3:49,012,960
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 1265988 as yet unmatched pairs. 47437 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr3:49,357,476
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 1263206 as yet unmatched pairs. 44650 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:50,253,116
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 1260763 as yet unmatched pairs. 42206 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:52,403,243
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 1257796 as yet unmatched pairs. 39226 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:52,833,333
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 1255949 as yet unmatched pairs. 37377 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:61,562,360
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 1252980 as yet unmatched pairs. 34395 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:72,446,511
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 1250368 as yet unmatched pairs. 31753 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:100,748,167
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 1248337 as yet unmatched pairs. 29721 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:112,605,451
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 1246088 as yet unmatched pairs. 27468 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:120,334,965
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 1243525 as yet unmatched pairs. 24903 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:123,657,233
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1241819 as yet unmatched pairs. 23192 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:126,475,565
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 1238948 as yet unmatched pairs. 20318 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr3:129,560,408
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 1236475 as yet unmatched pairs. 17843 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:138,808,713
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 1233610 as yet unmatched pairs. 14973 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:149,657,201
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 1233158 as yet unmatched pairs. 14498 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:161,068,936
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 1229328 as yet unmatched pairs. 10664 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:183,786,209
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1226707 as yet unmatched pairs. 8028 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:185,925,481
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1224010 as yet unmatched pairs. 5318 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:188,708,270
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 1225693 as yet unmatched pairs. 6998 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr3:195,909,288
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1219903 as yet unmatched pairs. 1206 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr4:1,167,204
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1217317 as yet unmatched pairs. 37823 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr4:2,744,386
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 1214721 as yet unmatched pairs. 35213 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr4:6,598,254
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 1212117 as yet unmatched pairs. 32604 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:13,337,166
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1209434 as yet unmatched pairs. 29909 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:30,724,560
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1207429 as yet unmatched pairs. 27897 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:48,619,333
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 1204786 as yet unmatched pairs. 25230 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:57,040,841
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 1204062 as yet unmatched pairs. 24500 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:76,180,996
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 1200137 as yet unmatched pairs. 20570 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:84,860,462
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 1197789 as yet unmatched pairs. 18209 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:90,308,646
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 1195537 as yet unmatched pairs. 15936 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:106,233,020
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 1193299 as yet unmatched pairs. 13687 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:119,030,656
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 1196571 as yet unmatched pairs. 16949 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr4:123,401,553
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1190263 as yet unmatched pairs. 10641 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:145,104,426
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 1186515 as yet unmatched pairs. 6887 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:156,850,277
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 1184341 as yet unmatched pairs. 4708 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr4:173,333,575
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1182079 as yet unmatched pairs. 2442 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 3s. Last read position: chr5:256,574
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 1179405 as yet unmatched pairs. 61666 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:11,817,297
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 1177000 as yet unmatched pairs. 59240 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr5:16,711,193
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 1174465 as yet unmatched pairs. 56701 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:38,958,502
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 1172338 as yet unmatched pairs. 54567 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr5:54,518,670
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1170139 as yet unmatched pairs. 52359 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:69,365,404
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1167822 as yet unmatched pairs. 50006 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:74,769,223
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1166100 as yet unmatched pairs. 48273 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:87,399,435
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 1164078 as yet unmatched pairs. 46233 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr5:102,831,878
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1161596 as yet unmatched pairs. 43749 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr5:124,647,367
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 1159386 as yet unmatched pairs. 41529 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr5:134,578,892
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 1156911 as yet unmatched pairs. 39051 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:138,465,899
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 1162239 as yet unmatched pairs. 44377 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,571
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 1164731 as yet unmatched pairs. 46869 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:139,364,668
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 1150376 as yet unmatched pairs. 32501 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:141,193,897
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 1148545 as yet unmatched pairs. 30611 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr5:141,863,464
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 1146138 as yet unmatched pairs. 28202 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:150,000,454
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 1143415 as yet unmatched pairs. 25472 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:150,251,787
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 1140940 as yet unmatched pairs. 22985 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,275
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 1158658 as yet unmatched pairs. 40702 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:150,722,945
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 1136191 as yet unmatched pairs. 18185 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:154,793,802
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1134897 as yet unmatched pairs. 16889 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:168,722,290
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1132515 as yet unmatched pairs. 14488 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:171,876,295
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1129656 as yet unmatched pairs. 11616 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr5:175,522,405
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 1126825 as yet unmatched pairs. 8779 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:177,490,981
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 1126646 as yet unmatched pairs. 8594 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:179,733,030
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 1122506 as yet unmatched pairs. 4451 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr5:179,878,435
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 1120102 as yet unmatched pairs. 2045 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr6:3,225,500
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 1117468 as yet unmatched pairs. 78236 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr6:12,121,666
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1115035 as yet unmatched pairs. 75801 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:20,152,683
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 1113046 as yet unmatched pairs. 73786 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr6:26,458,673
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 1110474 as yet unmatched pairs. 71213 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr6:29,943,270
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 1110142 as yet unmatched pairs. 70860 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:30,605,994
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1106057 as yet unmatched pairs. 66771 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,269,003
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1104741 as yet unmatched pairs. 65442 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,810
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1101681 as yet unmatched pairs. 62381 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,051
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1099127 as yet unmatched pairs. 59825 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:31,960,033
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1098104 as yet unmatched pairs. 58798 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:32,034,554
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1097306 as yet unmatched pairs. 58000 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:32,056,663
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1097563 as yet unmatched pairs. 58255 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:32,079,121
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 1094048 as yet unmatched pairs. 54740 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr6:32,097,108
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1092779 as yet unmatched pairs. 53466 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:32,937,252
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1085099 as yet unmatched pairs. 45785 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:33,412,257
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 1085557 as yet unmatched pairs. 46243 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr6:35,421,911
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 1080100 as yet unmatched pairs. 40785 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr6:37,446,335
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1077505 as yet unmatched pairs. 38184 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 2s. Last read position: chr6:43,051,736
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 1075162 as yet unmatched pairs. 35829 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 2s. Last read position: chr6:44,151,986
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1072169 as yet unmatched pairs. 32835 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:56,458,961
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1069929 as yet unmatched pairs. 30586 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:73,519,885
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1068368 as yet unmatched pairs. 29023 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr6:88,165,987
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1065596 as yet unmatched pairs. 26245 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:100,867,939
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 1063442 as yet unmatched pairs. 24083 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:109,454,177
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 1060943 as yet unmatched pairs. 21581 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:117,998,997
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 1058373 as yet unmatched pairs. 19008 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr6:130,869,814
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1057183 as yet unmatched pairs. 17818 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr6:136,278,528
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 1053500 as yet unmatched pairs. 14134 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:143,511,533
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1051760 as yet unmatched pairs. 12392 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr6:151,240,567
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1053877 as yet unmatched pairs. 14498 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr6:152,278,192
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 1047046 as yet unmatched pairs. 7664 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr6:158,665,393
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1044591 as yet unmatched pairs. 5207 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:161,136,572
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 1042076 as yet unmatched pairs. 2691 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr6:170,317,582
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1040072 as yet unmatched pairs. 685 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr7:2,539,243
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1037115 as yet unmatched pairs. 67571 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,370,616
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 1036562 as yet unmatched pairs. 67014 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,314
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1044750 as yet unmatched pairs. 75200 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:6,154,904
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1028896 as yet unmatched pairs. 59338 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:23,267,968
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1026707 as yet unmatched pairs. 57139 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:31,103,244
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1023837 as yet unmatched pairs. 54256 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr7:44,056,751
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 1022292 as yet unmatched pairs. 52708 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:44,761,889
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1019784 as yet unmatched pairs. 50197 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:55,472,987
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 1017391 as yet unmatched pairs. 47801 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,928
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 1015374 as yet unmatched pairs. 45779 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:74,174,377
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 1013151 as yet unmatched pairs. 43554 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:75,496,681
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 1011252 as yet unmatched pairs. 41652 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:76,981,122
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1009310 as yet unmatched pairs. 39710 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr7:92,079,171
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1007181 as yet unmatched pairs. 37575 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr7:94,412,667
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1011216 as yet unmatched pairs. 41606 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr7:95,596,105
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 1004818 as yet unmatched pairs. 35205 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:99,968,283
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 999656 as yet unmatched pairs. 30030 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,577,053
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 997430 as yet unmatched pairs. 27803 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,127,199
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 995207 as yet unmatched pairs. 25580 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:102,555,890
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 993877 as yet unmatched pairs. 24247 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:106,261,663
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 991223 as yet unmatched pairs. 21588 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:120,967,984
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 988741 as yet unmatched pairs. 19066 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr7:128,835,530
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 988592 as yet unmatched pairs. 18917 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 2s. Last read position: chr7:130,129,425
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 984109 as yet unmatched pairs. 14433 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:134,960,599
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 985012 as yet unmatched pairs. 15332 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:139,716,907
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 981288 as yet unmatched pairs. 11605 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr7:143,389,861
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 979314 as yet unmatched pairs. 9604 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr7:149,850,214
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 975761 as yet unmatched pairs. 6050 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 3s. Last read position: chr7:151,232,730
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 973084 as yet unmatched pairs. 3366 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:158,675,521
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 970434 as yet unmatched pairs. 699 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr8:13,085,863
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 967981 as yet unmatched pairs. 53091 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:22,571,147
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 965607 as yet unmatched pairs. 50694 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:26,627,240
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 964213 as yet unmatched pairs. 49291 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:30,474,836
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 962351 as yet unmatched pairs. 47419 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:38,288,535
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 958256 as yet unmatched pairs. 43318 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,393
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 956521 as yet unmatched pairs. 41580 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr8:42,403,426
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 953293 as yet unmatched pairs. 38347 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:47,834,246
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 950413 as yet unmatched pairs. 35466 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 80s. Last read position: chr8:60,853,292
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 947610 as yet unmatched pairs. 32644 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr8:73,738,323
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 945430 as yet unmatched pairs. 30454 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:94,827,772
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 943181 as yet unmatched pairs. 28199 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr8:100,709,538
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 942286 as yet unmatched pairs. 27300 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr8:115,604,288
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 938449 as yet unmatched pairs. 23453 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr8:124,323,366
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 935865 as yet unmatched pairs. 20868 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,967
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 940675 as yet unmatched pairs. 25673 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr8:140,789,474
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 931578 as yet unmatched pairs. 16552 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr8:143,694,040
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 928215 as yet unmatched pairs. 13187 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr8:143,861,338
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 926925 as yet unmatched pairs. 11894 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,266
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 926296 as yet unmatched pairs. 11265 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr8:143,923,494
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 923906 as yet unmatched pairs. 8869 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,991,907
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 919575 as yet unmatched pairs. 4531 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr8:144,464,498
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 916685 as yet unmatched pairs. 1622 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 3s. Last read position: chr9:2,639,872
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 914170 as yet unmatched pairs. 63720 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr9:17,135,080
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 911841 as yet unmatched pairs. 61382 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr9:33,917,073
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 909458 as yet unmatched pairs. 58987 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:35,609,272
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 907126 as yet unmatched pairs. 56655 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr9:35,714,244
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 905477 as yet unmatched pairs. 55006 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr9:38,397,220
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 901848 as yet unmatched pairs. 51361 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr9:71,729,982
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 900054 as yet unmatched pairs. 49564 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr9:83,973,328
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 898125 as yet unmatched pairs. 47625 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr9:92,494,008
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 894847 as yet unmatched pairs. 44341 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr9:97,648,113
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 892420 as yet unmatched pairs. 41904 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr9:101,561,907
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 889542 as yet unmatched pairs. 39019 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr9:110,408,526
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 887628 as yet unmatched pairs. 37095 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:114,356,882
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 885314 as yet unmatched pairs. 34771 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr9:121,201,695
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 882141 as yet unmatched pairs. 31597 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr9:121,332,505
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 881882 as yet unmatched pairs. 31337 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr9:125,236,789
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 877348 as yet unmatched pairs. 26803 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr9:127,943,194
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 874784 as yet unmatched pairs. 24236 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr9:128,630,334
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 872270 as yet unmatched pairs. 21719 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr9:130,375,949
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 869137 as yet unmatched pairs. 18585 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr9:131,082,124
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 866788 as yet unmatched pairs. 16225 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr9:132,678,268
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 864017 as yet unmatched pairs. 13453 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr9:134,139,904
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 861888 as yet unmatched pairs. 11312 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr9:136,011,944
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 859179 as yet unmatched pairs. 8602 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr9:136,545,732
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 856233 as yet unmatched pairs. 5655 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr9:137,079,318
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 853171 as yet unmatched pairs. 2592 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr10:422,923
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 850510 as yet unmatched pairs. 45958 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr10:6,226,335
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 848975 as yet unmatched pairs. 44401 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr10:17,229,401
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 848339 as yet unmatched pairs. 43754 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr10:24,620,097
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 843056 as yet unmatched pairs. 38456 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr10:29,554,805
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 841904 as yet unmatched pairs. 37304 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr10:34,359,169
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 838831 as yet unmatched pairs. 34231 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,568
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 837421 as yet unmatched pairs. 32820 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr10:50,129,449
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 834981 as yet unmatched pairs. 30378 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr10:68,338,572
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 832331 as yet unmatched pairs. 27724 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,310
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 831473 as yet unmatched pairs. 26862 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr10:74,109,135
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 828556 as yet unmatched pairs. 23945 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr10:79,846,746
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 825048 as yet unmatched pairs. 20422 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr10:88,938,083
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 824939 as yet unmatched pairs. 20313 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr10:95,290,438
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 821381 as yet unmatched pairs. 16746 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr10:97,460,178
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 818776 as yet unmatched pairs. 14127 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr10:101,828,657
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 815928 as yet unmatched pairs. 11279 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr10:103,571,505
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 813500 as yet unmatched pairs. 8837 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr10:114,975,244
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 810914 as yet unmatched pairs. 6248 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr10:122,085,612
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 808815 as yet unmatched pairs. 4147 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr10:126,278,961
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 806538 as yet unmatched pairs. 1867 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr11:308,246
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 805696 as yet unmatched pairs. 87743 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:609,584
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 801616 as yet unmatched pairs. 83661 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,748
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 798523 as yet unmatched pairs. 80557 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:2,395,445
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 797961 as yet unmatched pairs. 79995 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:6,477,674
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 793613 as yet unmatched pairs. 75637 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr11:8,730,129
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 792733 as yet unmatched pairs. 74757 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr11:11,967,024
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 789422 as yet unmatched pairs. 71446 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr11:19,879,987
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 786418 as yet unmatched pairs. 68436 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr11:35,229,163
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 786395 as yet unmatched pairs. 68407 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr11:46,369,973
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 782189 as yet unmatched pairs. 64199 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr11:47,622,720
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 779183 as yet unmatched pairs. 61193 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr11:57,660,816
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 776754 as yet unmatched pairs. 58764 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:61,420,015
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 774601 as yet unmatched pairs. 56605 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,717
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 773304 as yet unmatched pairs. 55306 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,071
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 772229 as yet unmatched pairs. 54231 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr11:62,603,805
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 767950 as yet unmatched pairs. 49952 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr11:63,904,814
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 765288 as yet unmatched pairs. 47288 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr11:64,767,682
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 763880 as yet unmatched pairs. 45880 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr11:65,320,968
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 759523 as yet unmatched pairs. 41523 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr11:65,590,162
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 756831 as yet unmatched pairs. 38823 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 3s. Last read position: chr11:65,900,273
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 753599 as yet unmatched pairs. 35587 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr11:66,626,509
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 751472 as yet unmatched pairs. 33458 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr11:67,991,397
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 748486 as yet unmatched pairs. 30471 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr11:70,414,636
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 746435 as yet unmatched pairs. 28408 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr11:72,235,926
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 743481 as yet unmatched pairs. 25442 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr11:74,836,531
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 740737 as yet unmatched pairs. 22697 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr11:82,694,753
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 738254 as yet unmatched pairs. 20213 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr11:94,831,450
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 736030 as yet unmatched pairs. 17978 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr11:108,353,770
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 733431 as yet unmatched pairs. 15376 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr11:114,063,997
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 734432 as yet unmatched pairs. 16371 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr11:117,203,002
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 729197 as yet unmatched pairs. 11129 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr11:118,505,715
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 726101 as yet unmatched pairs. 8027 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr11:119,121,629
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 723825 as yet unmatched pairs. 5748 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr11:123,097,811
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 721802 as yet unmatched pairs. 3723 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr11:130,194,235
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 718962 as yet unmatched pairs. 882 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr12:1,083,259
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 717042 as yet unmatched pairs. 89039 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:6,019,417
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 715303 as yet unmatched pairs. 87295 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr12:6,578,894
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 712867 as yet unmatched pairs. 84854 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr12:6,933,934
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 710111 as yet unmatched pairs. 82096 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr12:7,070,540
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 708051 as yet unmatched pairs. 80019 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr12:7,931,327
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 706132 as yet unmatched pairs. 78098 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr12:9,091,382
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 704541 as yet unmatched pairs. 76504 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr12:10,722,989
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 700993 as yet unmatched pairs. 72953 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr12:14,885,736
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 697967 as yet unmatched pairs. 69908 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:26,483,880
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 695810 as yet unmatched pairs. 67736 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 3s. Last read position: chr12:42,313,690
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 693515 as yet unmatched pairs. 65441 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr12:47,993,778
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 692135 as yet unmatched pairs. 64051 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr12:49,052,205
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 688800 as yet unmatched pairs. 60711 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr12:50,505,056
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 687168 as yet unmatched pairs. 59069 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,415
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 712139 as yet unmatched pairs. 84040 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,763
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 717845 as yet unmatched pairs. 89745 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr12:52,057,415
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 687261 as yet unmatched pairs. 59156 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr12:53,061,129
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 676517 as yet unmatched pairs. 48410 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr12:53,715,787
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 674482 as yet unmatched pairs. 46375 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr12:54,511,840
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 671939 as yet unmatched pairs. 43829 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr12:56,092,771
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 669291 as yet unmatched pairs. 41181 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr12:56,417,676
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 666916 as yet unmatched pairs. 38802 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr12:57,098,849
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 666265 as yet unmatched pairs. 38150 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr12:57,178,582
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 662752 as yet unmatched pairs. 34637 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr12:57,212,218
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 660601 as yet unmatched pairs. 32485 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr12:57,797,930
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 657269 as yet unmatched pairs. 29149 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr12:69,586,797
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 655288 as yet unmatched pairs. 27164 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr12:82,857,263
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 653006 as yet unmatched pairs. 24880 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr12:95,210,260
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 650654 as yet unmatched pairs. 22524 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr12:105,133,771
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 648404 as yet unmatched pairs. 20274 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr12:109,915,403
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 646015 as yet unmatched pairs. 17881 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr12:112,279,264
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 643449 as yet unmatched pairs. 15315 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr12:118,136,149
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 641236 as yet unmatched pairs. 13101 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 2s. Last read position: chr12:120,736,998
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 638301 as yet unmatched pairs. 10160 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr12:122,377,569
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 636298 as yet unmatched pairs. 8157 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr12:124,343,127
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 633891 as yet unmatched pairs. 5747 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 2s. Last read position: chr12:131,941,676
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 631103 as yet unmatched pairs. 2957 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr12:132,869,675
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 628427 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr13:27,440,277
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 626221 as yet unmatched pairs. 17491 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr13:39,600,932
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 624305 as yet unmatched pairs. 15570 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr13:46,782,745
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 621769 as yet unmatched pairs. 13024 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr13:77,007,745
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 619405 as yet unmatched pairs. 10650 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr13:99,295,732
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 617091 as yet unmatched pairs. 8327 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 2s. Last read position: chr13:110,213,791
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 615632 as yet unmatched pairs. 6864 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr13:110,879,841
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 611864 as yet unmatched pairs. 3096 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr14:20,357,537
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 608742 as yet unmatched pairs. 45598 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr14:21,525,069
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 606554 as yet unmatched pairs. 43408 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr14:23,357,249
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 604215 as yet unmatched pairs. 41068 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr14:24,370,073
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 602037 as yet unmatched pairs. 38888 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr14:35,402,524
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 602134 as yet unmatched pairs. 38977 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr14:50,628,366
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 596533 as yet unmatched pairs. 33349 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr14:58,200,217
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 594290 as yet unmatched pairs. 31106 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr14:64,738,002
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 592051 as yet unmatched pairs. 28866 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr14:68,890,186
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 590495 as yet unmatched pairs. 27305 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr14:73,261,254
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 587288 as yet unmatched pairs. 24096 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr14:74,902,202
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 584814 as yet unmatched pairs. 21615 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 2s. Last read position: chr14:75,280,115
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 595722 as yet unmatched pairs. 32515 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr14:76,776,140
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 580034 as yet unmatched pairs. 16827 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 2s. Last read position: chr14:91,338,125
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 577653 as yet unmatched pairs. 14446 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr14:95,203,744
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 575055 as yet unmatched pairs. 11848 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr14:102,011,874
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 573460 as yet unmatched pairs. 10222 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 2s. Last read position: chr14:103,521,368
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 572438 as yet unmatched pairs. 9198 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr14:104,942,366
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 568775 as yet unmatched pairs. 5535 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr14:105,248,656
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 565793 as yet unmatched pairs. 2553 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr14:105,770,509
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 564024 as yet unmatched pairs. 782 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 2s. Last read position: chr15:29,716,808
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 561547 as yet unmatched pairs. 45025 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr15:34,527,779
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 560886 as yet unmatched pairs. 44361 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr15:39,588,548
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 563479 as yet unmatched pairs. 46950 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 2s. Last read position: chr15:40,899,296
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 555059 as yet unmatched pairs. 38529 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr15:42,685,382
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 553102 as yet unmatched pairs. 36570 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr15:43,793,824
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 552314 as yet unmatched pairs. 35782 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr15:49,012,634
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 548267 as yet unmatched pairs. 31735 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr15:58,597,415
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 546065 as yet unmatched pairs. 29533 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr15:63,059,646
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 546991 as yet unmatched pairs. 30458 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr15:64,865,598
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 541741 as yet unmatched pairs. 25200 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr15:69,268,420
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 539000 as yet unmatched pairs. 22458 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 2s. Last read position: chr15:73,998,063
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 538530 as yet unmatched pairs. 21986 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 2s. Last read position: chr15:75,355,016
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 534031 as yet unmatched pairs. 17485 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr15:78,003,307
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 531699 as yet unmatched pairs. 15153 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr15:84,239,796
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 529305 as yet unmatched pairs. 12755 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr15:87,978,462
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 527587 as yet unmatched pairs. 11036 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr15:90,449,622
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 525646 as yet unmatched pairs. 9095 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr15:99,105,110
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 523720 as yet unmatched pairs. 7165 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr15:99,131,031
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 520763 as yet unmatched pairs. 4208 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr15:101,178,474
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 517441 as yet unmatched pairs. 884 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 2s. Last read position: chr16:658,200
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 514910 as yet unmatched pairs. 85169 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 2s. Last read position: chr16:1,229,622
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 512643 as yet unmatched pairs. 82901 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr16:1,772,351
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 509659 as yet unmatched pairs. 79916 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 2s. Last read position: chr16:2,109,217
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 506873 as yet unmatched pairs. 77130 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 2s. Last read position: chr16:2,759,601
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 504581 as yet unmatched pairs. 74836 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr16:2,975,488
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 501443 as yet unmatched pairs. 71698 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr16:4,381,816
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 499130 as yet unmatched pairs. 69378 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr16:10,898,964
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 497380 as yet unmatched pairs. 67627 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr16:14,918,135
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 494388 as yet unmatched pairs. 64635 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,434,704
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 492805 as yet unmatched pairs. 63047 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 2s. Last read position: chr16:15,715,226
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 498970 as yet unmatched pairs. 69211 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr16:15,720,304
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 497286 as yet unmatched pairs. 67527 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr16:15,724,912
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 490156 as yet unmatched pairs. 60397 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 2s. Last read position: chr16:15,740,103
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 494360 as yet unmatched pairs. 64601 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr16:15,750,167
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 493519 as yet unmatched pairs. 63760 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr16:15,776,147
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 484633 as yet unmatched pairs. 54873 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr16:16,275,422
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 476999 as yet unmatched pairs. 47239 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,161
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 476190 as yet unmatched pairs. 46430 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr16:18,784,785
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 476409 as yet unmatched pairs. 46643 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr16:21,473,134
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 473762 as yet unmatched pairs. 43996 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr16:22,523,932
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 472373 as yet unmatched pairs. 42605 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr16:27,344,997
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 471339 as yet unmatched pairs. 41567 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr16:28,538,840
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 468650 as yet unmatched pairs. 38878 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr16:29,381,589
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 466870 as yet unmatched pairs. 37096 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr16:29,816,829
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 466627 as yet unmatched pairs. 36851 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,302
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 462853 as yet unmatched pairs. 33076 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,837
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 461196 as yet unmatched pairs. 31409 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr16:31,182,532
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 460359 as yet unmatched pairs. 30571 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 2s. Last read position: chr16:47,660,657
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 455668 as yet unmatched pairs. 25880 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr16:55,496,952
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 455427 as yet unmatched pairs. 25634 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr16:57,382,851
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 451246 as yet unmatched pairs. 21452 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr16:67,227,146
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 448231 as yet unmatched pairs. 18415 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr16:68,860,171
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 445847 as yet unmatched pairs. 16031 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr16:70,786,264
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 443209 as yet unmatched pairs. 13392 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr16:74,999,804
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 440942 as yet unmatched pairs. 11124 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr16:84,181,139
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 438940 as yet unmatched pairs. 9115 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr16:87,412,772
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 435821 as yet unmatched pairs. 5996 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr16:88,810,544
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 433091 as yet unmatched pairs. 3266 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr16:89,910,646
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 430462 as yet unmatched pairs. 632 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 3s. Last read position: chr17:1,651,543
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 427917 as yet unmatched pairs. 121654 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 2s. Last read position: chr17:2,680,180
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 425121 as yet unmatched pairs. 118858 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:4,789,029
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 422379 as yet unmatched pairs. 116116 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr17:6,756,109
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 420119 as yet unmatched pairs. 113856 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr17:7,462,742
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 418710 as yet unmatched pairs. 112447 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr17:7,847,207
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 415736 as yet unmatched pairs. 109473 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:8,145,967
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 414974 as yet unmatched pairs. 108702 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr17:12,974,149
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 410122 as yet unmatched pairs. 103850 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr17:17,158,961
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 410519 as yet unmatched pairs. 104244 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr17:18,317,110
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 405598 as yet unmatched pairs. 99318 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:27,601,391
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 403721 as yet unmatched pairs. 97441 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr17:28,912,528
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 401396 as yet unmatched pairs. 95116 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:31,521,192
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 398268 as yet unmatched pairs. 91987 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:35,844,919
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 396558 as yet unmatched pairs. 90276 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:38,183,585
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 394448 as yet unmatched pairs. 88166 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr17:38,914,433
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 392367 as yet unmatched pairs. 86085 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr17:40,020,273
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 389985 as yet unmatched pairs. 83703 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr17:41,505,173
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 389297 as yet unmatched pairs. 83014 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 3s. Last read position: chr17:42,315,688
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 386654 as yet unmatched pairs. 80371 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 2s. Last read position: chr17:42,852,776
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 382438 as yet unmatched pairs. 76152 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:44,320,639
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 380022 as yet unmatched pairs. 73736 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:45,585,909
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 376958 as yet unmatched pairs. 70667 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:47,975,160
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 375257 as yet unmatched pairs. 68958 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,558
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 374776 as yet unmatched pairs. 68477 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,120
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 410847 as yet unmatched pairs. 104548 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,572
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 410360 as yet unmatched pairs. 104053 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,428
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 398294 as yet unmatched pairs. 91981 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,071
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 418907 as yet unmatched pairs. 112593 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,851
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 403133 as yet unmatched pairs. 96819 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 66s. Last read position: chr17:50,193,014
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 411930 as yet unmatched pairs. 105616 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 79s. Last read position: chr17:50,194,409
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 414590 as yet unmatched pairs. 108276 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,283
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 410419 as yet unmatched pairs. 104105 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,154
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 394505 as yet unmatched pairs. 88188 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,014
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 407242 as yet unmatched pairs. 100916 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,241
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 359726 as yet unmatched pairs. 53397 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,699,554
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 340490 as yet unmatched pairs. 34159 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chr17:58,495,063
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 337828 as yet unmatched pairs. 31491 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr17:62,516,483
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 335672 as yet unmatched pairs. 29328 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chr17:64,499,851
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 333136 as yet unmatched pairs. 26790 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chr17:68,515,420
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 337141 as yet unmatched pairs. 30795 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chr17:74,473,554
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 328242 as yet unmatched pairs. 21889 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 2s. Last read position: chr17:75,613,056
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 325484 as yet unmatched pairs. 19129 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr17:76,039,891
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 322736 as yet unmatched pairs. 16378 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr17:77,492,686
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 321542 as yet unmatched pairs. 15183 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr17:78,971,693
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 318006 as yet unmatched pairs. 11643 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,981
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 315063 as yet unmatched pairs. 8700 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 2s. Last read position: chr17:81,545,745
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 312578 as yet unmatched pairs. 6212 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr17:82,054,964
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 309716 as yet unmatched pairs. 3350 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr17:83,085,130
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 306851 as yet unmatched pairs. 474 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 2s. Last read position: chr18:10,471,559
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 304163 as yet unmatched pairs. 10677 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 2s. Last read position: chr18:24,443,123
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 301517 as yet unmatched pairs. 8031 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr18:47,029,376
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 299510 as yet unmatched pairs. 6024 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 2s. Last read position: chr18:58,934,599
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 297258 as yet unmatched pairs. 3766 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 2s. Last read position: chr18:77,066,332
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 294686 as yet unmatched pairs. 1192 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 3s. Last read position: chr19:859,710
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 300608 as yet unmatched pairs. 137641 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 2s. Last read position: chr19:1,011,764
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 289202 as yet unmatched pairs. 126235 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr19:1,271,556
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 287196 as yet unmatched pairs. 124227 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr19:2,039,650
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 284583 as yet unmatched pairs. 121614 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 2s. Last read position: chr19:2,813,166
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 280225 as yet unmatched pairs. 117256 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr19:4,054,489
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 277418 as yet unmatched pairs. 114449 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 2s. Last read position: chr19:4,929,347
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 274937 as yet unmatched pairs. 111967 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 2s. Last read position: chr19:5,914,648
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 272518 as yet unmatched pairs. 109548 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 2s. Last read position: chr19:6,697,480
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 271594 as yet unmatched pairs. 108624 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chr19:7,441,742
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 267121 as yet unmatched pairs. 104151 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chr19:8,474,194
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 265015 as yet unmatched pairs. 102041 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chr19:10,321,127
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 261975 as yet unmatched pairs. 99001 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chr19:11,003,118
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 259483 as yet unmatched pairs. 96508 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 2s. Last read position: chr19:11,506,384
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 256880 as yet unmatched pairs. 93905 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chr19:12,791,804
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 254091 as yet unmatched pairs. 91116 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chr19:13,112,958
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 250743 as yet unmatched pairs. 87768 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 2s. Last read position: chr19:14,433,455
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 248628 as yet unmatched pairs. 85653 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 2s. Last read position: chr19:15,181,700
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 245989 as yet unmatched pairs. 83014 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr19:15,354,999
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 242614 as yet unmatched pairs. 79638 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 2s. Last read position: chr19:16,395,343
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 239734 as yet unmatched pairs. 76753 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 2s. Last read position: chr19:17,365,309
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 237728 as yet unmatched pairs. 74746 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 2s. Last read position: chr19:18,281,090
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 235748 as yet unmatched pairs. 72765 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr19:18,870,164
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 231245 as yet unmatched pairs. 68262 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr19:32,439,196
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 228873 as yet unmatched pairs. 65889 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr19:35,269,139
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 226979 as yet unmatched pairs. 63995 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 2s. Last read position: chr19:35,896,020
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 222956 as yet unmatched pairs. 59972 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 1s. Last read position: chr19:38,708,086
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 220624 as yet unmatched pairs. 57638 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 1s. Last read position: chr19:39,406,945
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 246104 as yet unmatched pairs. 83118 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr19:39,408,096
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 218807 as yet unmatched pairs. 55821 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,366
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 214627 as yet unmatched pairs. 51641 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 1s. Last read position: chr19:40,601,406
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 214105 as yet unmatched pairs. 51119 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 2s. Last read position: chr19:40,619,363
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 213236 as yet unmatched pairs. 50250 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 2s. Last read position: chr19:41,302,769
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 205204 as yet unmatched pairs. 42218 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 3s. Last read position: chr19:42,250,503
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 203215 as yet unmatched pairs. 40228 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 2s. Last read position: chr19:42,310,096
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 199795 as yet unmatched pairs. 36808 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 1s. Last read position: chr19:44,907,814
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 198806 as yet unmatched pairs. 35806 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 1s. Last read position: chr19:45,470,760
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 201943 as yet unmatched pairs. 38943 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 1s. Last read position: chr19:45,777,781
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 192408 as yet unmatched pairs. 29408 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 2s. Last read position: chr19:46,918,659
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 188615 as yet unmatched pairs. 25615 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 2s. Last read position: chr19:47,754,770
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 187144 as yet unmatched pairs. 24143 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 1s. Last read position: chr19:48,874,562
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 184814 as yet unmatched pairs. 21813 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,509
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 182363 as yet unmatched pairs. 19362 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 2s. Last read position: chr19:49,660,778
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 177990 as yet unmatched pairs. 14982 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 2s. Last read position: chr19:50,422,511
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 175124 as yet unmatched pairs. 12115 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 1s. Last read position: chr19:54,143,483
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 172701 as yet unmatched pairs. 9682 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 1s. Last read position: chr19:55,091,498
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 171244 as yet unmatched pairs. 8225 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr19:55,615,826
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 167089 as yet unmatched pairs. 4070 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 2s. Last read position: chr19:58,246,397
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 164584 as yet unmatched pairs. 1565 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 3s. Last read position: chr20:2,462,750
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 162017 as yet unmatched pairs. 37779 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 1s. Last read position: chr20:3,786,025
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 159035 as yet unmatched pairs. 34797 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr20:17,600,846
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 160355 as yet unmatched pairs. 36117 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 1s. Last read position: chr20:23,085,577
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 154397 as yet unmatched pairs. 30159 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 2s. Last read position: chr20:32,435,940
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 152243 as yet unmatched pairs. 28004 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 2s. Last read position: chr20:35,503,560
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 148837 as yet unmatched pairs. 24597 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 1s. Last read position: chr20:36,653,668
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 146581 as yet unmatched pairs. 22341 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 2s. Last read position: chr20:41,112,824
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 144209 as yet unmatched pairs. 19969 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:23:54s. Time for last 1,000,000: 2s. Last read position: chr20:44,905,115
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 141686 as yet unmatched pairs. 17446 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 1s. Last read position: chr20:47,633,524
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 139068 as yet unmatched pairs. 14828 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 2s. Last read position: chr20:50,582,712
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 136742 as yet unmatched pairs. 12502 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:24:01s. Time for last 1,000,000: 2s. Last read position: chr20:58,667,522
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 136004 as yet unmatched pairs. 11764 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 2s. Last read position: chr20:62,313,161
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 131601 as yet unmatched pairs. 7361 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:24:05s. Time for last 1,000,000: 1s. Last read position: chr20:62,827,250
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 130858 as yet unmatched pairs. 6618 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:24:07s. Time for last 1,000,000: 1s. Last read position: chr20:63,738,796
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 125893 as yet unmatched pairs. 1653 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:24:09s. Time for last 1,000,000: 1s. Last read position: chr21:6,121,438
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 123807 as yet unmatched pairs. 30214 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,259,002
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 122224 as yet unmatched pairs. 28626 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,956
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 121501 as yet unmatched pairs. 27890 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:24:13s. Time for last 1,000,000: 1s. Last read position: chr21:25,982,347
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 120530 as yet unmatched pairs. 26919 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 1s. Last read position: chr21:26,844,606
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 126161 as yet unmatched pairs. 32550 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:24:17s. Time for last 1,000,000: 1s. Last read position: chr21:33,573,378
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 114522 as yet unmatched pairs. 20911 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:24:19s. Time for last 1,000,000: 1s. Last read position: chr21:38,822,688
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 111821 as yet unmatched pairs. 18210 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 2s. Last read position: chr21:43,425,438
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 109907 as yet unmatched pairs. 16296 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chr21:45,456,230
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 109043 as yet unmatched pairs. 15428 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 1s. Last read position: chr21:45,989,093
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 105577 as yet unmatched pairs. 11962 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:24:27s. Time for last 1,000,000: 2s. Last read position: chr21:45,999,205
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 105111 as yet unmatched pairs. 11496 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:24:30s. Time for last 1,000,000: 2s. Last read position: chr21:46,117,413
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 103651 as yet unmatched pairs. 10036 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:24:33s. Time for last 1,000,000: 3s. Last read position: chr21:46,132,348
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 99690 as yet unmatched pairs. 6075 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:24:36s. Time for last 1,000,000: 2s. Last read position: chr22:18,607,353
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 92665 as yet unmatched pairs. 38493 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 1s. Last read position: chr22:20,761,318
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 90208 as yet unmatched pairs. 36036 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:24:40s. Time for last 1,000,000: 2s. Last read position: chr22:23,833,607
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 87766 as yet unmatched pairs. 33594 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:24:42s. Time for last 1,000,000: 1s. Last read position: chr22:29,141,966
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 85010 as yet unmatched pairs. 30832 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 1s. Last read position: chr22:30,334,597
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 82652 as yet unmatched pairs. 28474 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:24:46s. Time for last 1,000,000: 2s. Last read position: chr22:31,327,225
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 80070 as yet unmatched pairs. 25892 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:24:48s. Time for last 1,000,000: 2s. Last read position: chr22:36,285,714
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 80141 as yet unmatched pairs. 25963 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 1s. Last read position: chr22:37,127,221
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 75417 as yet unmatched pairs. 21239 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 1s. Last read position: chr22:38,214,826
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 72506 as yet unmatched pairs. 18322 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 2s. Last read position: chr22:39,317,526
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 70434 as yet unmatched pairs. 16250 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 1s. Last read position: chr22:41,327,221
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 67419 as yet unmatched pairs. 13235 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:24:57s. Time for last 1,000,000: 1s. Last read position: chr22:42,879,084
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 65327 as yet unmatched pairs. 11143 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:25:00s. Time for last 1,000,000: 2s. Last read position: chr22:45,542,175
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 68487 as yet unmatched pairs. 14303 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:25:03s. Time for last 1,000,000: 2s. Last read position: chr22:49,823,688
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 59585 as yet unmatched pairs. 5401 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 1s. Last read position: chr22:50,466,373
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 56806 as yet unmatched pairs. 2622 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:25:08s. Time for last 1,000,000: 3s. Last read position: chrX:1,601,025
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 53504 as yet unmatched pairs. 44243 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:25:10s. Time for last 1,000,000: 2s. Last read position: chrX:10,117,353
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 51488 as yet unmatched pairs. 42227 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 2s. Last read position: chrX:23,872,771
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 48835 as yet unmatched pairs. 39567 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:25:14s. Time for last 1,000,000: 2s. Last read position: chrX:41,343,776
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 47144 as yet unmatched pairs. 37875 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:25:16s. Time for last 1,000,000: 2s. Last read position: chrX:48,575,560
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 44648 as yet unmatched pairs. 35379 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:25:18s. Time for last 1,000,000: 1s. Last read position: chrX:51,898,172
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 42210 as yet unmatched pairs. 32941 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:25:20s. Time for last 1,000,000: 1s. Last read position: chrX:53,603,489
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 39920 as yet unmatched pairs. 30651 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:25:22s. Time for last 1,000,000: 1s. Last read position: chrX:70,493,393
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 37544 as yet unmatched pairs. 28275 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:25:24s. Time for last 1,000,000: 2s. Last read position: chrX:74,592,523
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 35057 as yet unmatched pairs. 25788 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:25:26s. Time for last 1,000,000: 1s. Last read position: chrX:102,656,825
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 32963 as yet unmatched pairs. 23693 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:25:28s. Time for last 1,000,000: 2s. Last read position: chrX:110,452,900
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 30428 as yet unmatched pairs. 21158 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 1s. Last read position: chrX:130,015,910
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 28537 as yet unmatched pairs. 19267 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:25:32s. Time for last 1,000,000: 1s. Last read position: chrX:150,231,682
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 25992 as yet unmatched pairs. 16722 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:25:34s. Time for last 1,000,000: 2s. Last read position: chrX:153,954,848
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 23647 as yet unmatched pairs. 14377 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:25:37s. Time for last 1,000,000: 2s. Last read position: chrX:154,352,215
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 27274 as yet unmatched pairs. 18004 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 3s. Last read position: chrX:154,358,297
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 22698 as yet unmatched pairs. 13428 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:25:42s. Time for last 1,000,000: 2s. Last read position: chrX:154,361,412
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 28447 as yet unmatched pairs. 19177 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 1s. Last read position: chrX:154,366,378
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 16920 as yet unmatched pairs. 7650 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:25:46s. Time for last 1,000,000: 2s. Last read position: chrX:154,428,829
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 10975 as yet unmatched pairs. 1705 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:25:48s. Time for last 1,000,000: 1s. Last read position: chrY:9,528,265
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 9220 as yet unmatched pairs. 816 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:25:49s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,395
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 5154 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:25:51s. Time for last 1,000,000: 1s. Last read position: KI270711.1:22,949
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 5221 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:25:52s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,093
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 89 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 634552529 records. 0 pairs never matched.
INFO 2026-06-08 09:04:28 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140344; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:04:28 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:04:32 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:04:32 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:04:58 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:04:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,492
INFO 2026-06-08 09:05:39 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:05:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,863
INFO 2026-06-08 09:06:08 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:06:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,980
INFO 2026-06-08 09:06:08 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 09:06:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,104
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder Large duplicate set. size = 1522
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,351
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder Large duplicate set. size = 1415
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,628
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder Large duplicate set. size = 1901
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,581
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,927
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,297
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,490
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1799
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,678
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,012
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,169
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,365
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 2234
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,608
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,059
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,719
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1568
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,558
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,456
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1606
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,679
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,548
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,120
INFO 2026-06-08 09:06:31 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:06:31 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:07:44 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:07:51 MarkDuplicates After generateDuplicateIndexes freeMemory: 203961880; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:07:51 MarkDuplicates Marking 360728034 records as duplicates.
INFO 2026-06-08 09:07:51 MarkDuplicates Found 23906195 optical duplicate clusters.
INFO 2026-06-08 09:07:51 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:08:09 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:21,872,643
INFO 2026-06-08 09:08:27 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 18s. Last read position: chr1:43,667,952
INFO 2026-06-08 09:08:45 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:54s. Time for last 10,000,000: 18s. Last read position: chr1:119,727,063
INFO 2026-06-08 09:09:03 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:12s. Time for last 10,000,000: 17s. Last read position: chr1:155,438,512
INFO 2026-06-08 09:09:21 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:30s. Time for last 10,000,000: 17s. Last read position: chr1:201,490,232
INFO 2026-06-08 09:09:38 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 17s. Last read position: chr2:8,747,957
INFO 2026-06-08 09:09:56 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 18s. Last read position: chr2:43,224,522
INFO 2026-06-08 09:10:14 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:23s. Time for last 10,000,000: 18s. Last read position: chr2:102,338,211
INFO 2026-06-08 09:10:33 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 18s. Last read position: chr2:191,835,841
INFO 2026-06-08 09:10:50 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 17s. Last read position: chr2:222,521,852
INFO 2026-06-08 09:11:08 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 17s. Last read position: chr3:39,143,011
INFO 2026-06-08 09:11:26 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 18s. Last read position: chr3:72,446,511
INFO 2026-06-08 09:11:44 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:53s. Time for last 10,000,000: 18s. Last read position: chr3:183,786,209
INFO 2026-06-08 09:12:03 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:11s. Time for last 10,000,000: 18s. Last read position: chr4:57,040,841
INFO 2026-06-08 09:12:21 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 18s. Last read position: chr5:256,574
INFO 2026-06-08 09:12:39 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 18s. Last read position: chr5:134,578,892
INFO 2026-06-08 09:12:57 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 17s. Last read position: chr5:154,793,802
INFO 2026-06-08 09:13:15 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 18s. Last read position: chr6:26,458,673
INFO 2026-06-08 09:13:33 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 17s. Last read position: chr6:32,097,108
INFO 2026-06-08 09:13:50 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 17s. Last read position: chr6:100,867,939
INFO 2026-06-08 09:14:08 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 17s. Last read position: chr6:170,317,582
INFO 2026-06-08 09:14:26 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 17s. Last read position: chr7:72,942,928
INFO 2026-06-08 09:14:44 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 18s. Last read position: chr7:102,555,890
INFO 2026-06-08 09:15:02 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 17s. Last read position: chr7:158,675,521
INFO 2026-06-08 09:15:20 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 17s. Last read position: chr8:73,738,323
INFO 2026-06-08 09:15:37 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 17s. Last read position: chr8:143,923,494
INFO 2026-06-08 09:15:55 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 17s. Last read position: chr9:83,973,328
INFO 2026-06-08 09:16:13 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:22s. Time for last 10,000,000: 17s. Last read position: chr9:128,630,334
INFO 2026-06-08 09:16:31 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:40s. Time for last 10,000,000: 18s. Last read position: chr10:17,229,401
INFO 2026-06-08 09:16:49 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 17s. Last read position: chr10:88,938,083
INFO 2026-06-08 09:17:07 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 18s. Last read position: chr11:1,244,748
INFO 2026-06-08 09:17:25 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:34s. Time for last 10,000,000: 18s. Last read position: chr11:61,420,015
INFO 2026-06-08 09:17:44 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:52s. Time for last 10,000,000: 18s. Last read position: chr11:67,991,397
INFO 2026-06-08 09:18:01 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:10s. Time for last 10,000,000: 17s. Last read position: chr11:119,121,629
INFO 2026-06-08 09:18:19 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:28s. Time for last 10,000,000: 17s. Last read position: chr12:10,722,989
INFO 2026-06-08 09:18:37 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:46s. Time for last 10,000,000: 17s. Last read position: chr12:53,061,129
INFO 2026-06-08 09:18:54 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 17s. Last read position: chr12:82,857,263
INFO 2026-06-08 09:19:12 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:21s. Time for last 10,000,000: 17s. Last read position: chr12:132,869,675
INFO 2026-06-08 09:19:30 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 17s. Last read position: chr14:23,357,249
INFO 2026-06-08 09:19:48 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 17s. Last read position: chr14:76,776,140
INFO 2026-06-08 09:20:06 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 18s. Last read position: chr15:39,588,548
INFO 2026-06-08 09:20:24 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:33s. Time for last 10,000,000: 18s. Last read position: chr15:75,355,016
INFO 2026-06-08 09:20:42 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:51s. Time for last 10,000,000: 17s. Last read position: chr16:1,772,351
INFO 2026-06-08 09:21:00 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:09s. Time for last 10,000,000: 17s. Last read position: chr16:15,724,912
INFO 2026-06-08 09:21:18 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 17s. Last read position: chr16:28,538,840
INFO 2026-06-08 09:21:36 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 17s. Last read position: chr16:68,860,171
INFO 2026-06-08 09:21:53 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 17s. Last read position: chr17:6,756,109
INFO 2026-06-08 09:22:11 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 17s. Last read position: chr17:35,844,919
INFO 2026-06-08 09:22:29 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 17s. Last read position: chr17:50,185,558
INFO 2026-06-08 09:22:47 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:56s. Time for last 10,000,000: 17s. Last read position: chr17:50,197,014
INFO 2026-06-08 09:23:04 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 17s. Last read position: chr17:77,492,686
INFO 2026-06-08 09:23:22 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 17s. Last read position: chr18:77,066,332
INFO 2026-06-08 09:23:40 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 17s. Last read position: chr19:7,441,742
INFO 2026-06-08 09:23:57 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:06s. Time for last 10,000,000: 17s. Last read position: chr19:16,395,343
INFO 2026-06-08 09:24:15 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:24s. Time for last 10,000,000: 17s. Last read position: chr19:39,433,366
INFO 2026-06-08 09:24:32 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:41s. Time for last 10,000,000: 17s. Last read position: chr19:47,754,770
INFO 2026-06-08 09:24:50 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:59s. Time for last 10,000,000: 17s. Last read position: chr20:3,786,025
INFO 2026-06-08 09:25:07 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:16s. Time for last 10,000,000: 17s. Last read position: chr20:58,667,522
INFO 2026-06-08 09:25:24 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:33s. Time for last 10,000,000: 16s. Last read position: chr21:38,822,688
INFO 2026-06-08 09:25:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:50s. Time for last 10,000,000: 17s. Last read position: chr22:29,141,966
INFO 2026-06-08 09:25:59 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:08s. Time for last 10,000,000: 17s. Last read position: chr22:49,823,688
INFO 2026-06-08 09:26:17 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:26s. Time for last 10,000,000: 18s. Last read position: chrX:74,592,523
INFO 2026-06-08 09:26:38 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:46s. Time for last 10,000,000: 20s. Last read position: chrX:154,428,829
INFO 2026-06-08 09:26:55 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:26:55 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:26:55 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:26:55 MarkDuplicates Before output close freeMemory: 203988816; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:26:55 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:26:55 MarkDuplicates After output close freeMemory: 104188392; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:26:55 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 49.33 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory