Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/cee60811a10354e8130646d57a39c6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/cee60811a10354e8130646d57a39c6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/33fbc1a261ede7de8eba855bc7ca45/tih_rna_sample_00594_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/e39edb2fe1bf277753c44e5507ff98/tih_rna_sample_00594_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FBN3--IGH@-ext
starfusion
FSIP1--AC013652.1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
ERC1--ADCY8
starfusion
arriba
PMS2P6--CCDC146
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
AC136431.1--PKD1P5
starfusion
COX6CP1--COX6C
starfusion
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
TVP23C--CDRT4
arriba
CRYZL2P--SEC16B
arriba
ERC1--AC087341.1
arriba

  0%|          | 0/17 [00:00<?, ?it/s]
Processing FBN3--IGH@-ext:   0%|          | 0/17 [00:00<?, ?it/s]
Processing FBN3--IGH@-ext:   6%|▌         | 1/17 [00:00<00:01,  9.25it/s]
Processing FSIP1--AC013652.1:   6%|▌         | 1/17 [00:00<00:01,  9.25it/s]
Processing FSIP1--AC013652.1:  12%|█▏        | 2/17 [00:00<00:01,  9.48it/s]
Processing TLK2P1--AC110079.1:  12%|█▏        | 2/17 [00:00<00:01,  9.48it/s]
Processing TLK2P1--AC110079.1:  18%|█▊        | 3/17 [00:00<00:01,  9.55it/s]
Processing LINC00381--NKAIN2:  18%|█▊        | 3/17 [00:00<00:01,  9.55it/s] 
Processing LINC00381--NKAIN2:  24%|██▎       | 4/17 [00:00<00:01,  9.59it/s]
Processing GUCY1B2--NKAIN2:  24%|██▎       | 4/17 [00:00<00:01,  9.59it/s]  
Processing GUCY1B2--NKAIN2:  29%|██▉       | 5/17 [00:00<00:01,  9.61it/s]
Processing ERC1--ADCY8:  29%|██▉       | 5/17 [00:00<00:01,  9.61it/s]    
Processing ERC1--ADCY8:  35%|███▌      | 6/17 [00:00<00:01,  9.61it/s]
Processing PMS2P6--CCDC146:  35%|███▌      | 6/17 [00:00<00:01,  9.61it/s]
Processing PMS2P6--CCDC146:  41%|████      | 7/17 [00:00<00:01,  9.62it/s]
Processing STX16--NPEPL1:  41%|████      | 7/17 [00:00<00:01,  9.62it/s]  
Processing STX16--NPEPL1:  47%|████▋     | 8/17 [00:00<00:00,  9.63it/s]
Processing TLK2--AC240565.1:  47%|████▋     | 8/17 [00:00<00:00,  9.63it/s]
Processing TLK2--AC240565.1:  53%|█████▎    | 9/17 [00:00<00:00,  9.63it/s]
Processing AC136431.1--PKD1P5:  53%|█████▎    | 9/17 [00:00<00:00,  9.63it/s]
Processing AC136431.1--PKD1P5:  59%|█████▉    | 10/17 [00:01<00:00,  9.64it/s]
Processing COX6CP1--COX6C:  59%|█████▉    | 10/17 [00:01<00:00,  9.64it/s]    
Processing COX6CP1--COX6C:  65%|██████▍   | 11/17 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  65%|██████▍   | 11/17 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  71%|███████   | 12/17 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC1:  71%|███████   | 12/17 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC1:  76%|███████▋  | 13/17 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC2:  76%|███████▋  | 13/17 [00:01<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC2:  82%|████████▏ | 14/17 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  82%|████████▏ | 14/17 [00:01<00:00,  9.64it/s]  
Processing TVP23C--CDRT4:  88%|████████▊ | 15/17 [00:01<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  88%|████████▊ | 15/17 [00:01<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  94%|█████████▍| 16/17 [00:01<00:00,  9.64it/s]
Processing ERC1--AC087341.1:  94%|█████████▍| 16/17 [00:01<00:00,  9.64it/s]
Processing ERC1--AC087341.1: 100%|██████████| 17/17 [00:01<00:00,  9.64it/s]
Processing ERC1--AC087341.1: 100%|██████████| 17/17 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory