File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/48e1a8acd66a786443a118575cbf70/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:50:54
                             Started mapping on |	Jun 08 08:57:37
                                    Finished on |	Jun 08 09:19:20
       Mapping speed, Million of reads per hour |	211.94

                          Number of input reads |	76710456
                      Average input read length |	222
                                    UNIQUE READS:
                   Uniquely mapped reads number |	72976062
                        Uniquely mapped reads % |	95.13%
                          Average mapped length |	221.03
                       Number of splices: Total |	70204481
            Number of splices: Annotated (sjdb) |	69161561
                       Number of splices: GT/AG |	69338689
                       Number of splices: GC/AG |	363032
                       Number of splices: AT/AC |	33947
               Number of splices: Non-canonical |	468813
                      Mismatch rate per base, % |	0.51%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.14
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.69
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2657800
             % of reads mapped to multiple loci |	3.46%
        Number of reads mapped to too many loci |	152512
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	817707
                 % of reads unmapped: too short |	1.07%
                Number of reads unmapped: other |	106375
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%