Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/87c200219f8df48de5b978a0a66601/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/87c200219f8df48de5b978a0a66601/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/0e201f0255b51ccc6c52864a1766dd/FFPE_HD789_01_RNA_13_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/b20793133ae036a6ff9d89481df6f1/FFPE_HD789_01_RNA_13_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 380356838
[W::hts_idx_load3] The index file is older than the data file: FFPE_HD789_01_RNA_13_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	380356838
Known Splicing Events:	377149204
Partial Novel Splicing Events:	2238084
Novel Splicing Events:	873632
Filtered Splicing Events:	95918

Total splicing  Junctions:	661173
Known Splicing Junctions:	309708
Partial Novel Splicing Junctions:	232168
Novel Splicing Junctions:	119297

===================================================================
Create BED file ...
Create Interact file ...