Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/d5b30b5c555e65f86d396f2b0b819d/tih_rna_sample_00583_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/7567bdbbb62c7296e653856cb11f33/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/7567bdbbb62c7296e653856cb11f33/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 20000000 records
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Processed 40000000 records
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Processed 50000000 records
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Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
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Processed 79000000 records
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Processed 110000000 records
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Processed 260000000 records
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Processed 268000000 records
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Processed 277000000 records
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Processed 279000000 records
Processed 280000000 records
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Processed 285000000 records
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Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
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Processed 340000000 records
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paired = 225095004
unpaired = 4817268
MERGED PAIRED END READS = 225095004
MATES PROCESSED = 455007276
TOTAL READS = 229912272
DISTINCT READS = 6.96904e+07
DISTINCT COUNTS = 824
MAX COUNT = 929468
COUNTS OF 1 = 2.273e+07
MAX TERMS = 100
OBSERVED COUNTS (929469)
1 22729957
2 14887574
3 10249610
4 6945454
5 4644157
6 3092086
7 2066304
8 1393832
9 952618
10 662601
11 469648
12 338132
13 249430
14 186378
15 141235
16 108923
17 85595
18 68517
19 54977
20 45006
21 36969
22 30907
23 25748
24 22318
25 19001
26 16469
27 14118
28 12683
29 11030
30 9746
31 8624
32 7820
33 6873
34 6238
35 5700
36 5109
37 4735
38 4219
39 3995
40 3459
41 3327
42 3019
43 2860
44 2618
45 2398
46 2171
47 2100
48 1939
49 1816
50 1737
51 1605
52 1532
53 1389
54 1352
55 1216
56 1114
57 1129
58 1075
59 988
60 931
61 885
62 884
63 778
64 762
65 734
66 692
67 654
68 598
69 647
70 606
71 543
72 529
73 522
74 478
75 459
76 455
77 446
78 386
79 374
80 373
81 357
82 355
83 324
84 315
85 339
86 321
87 295
88 275
89 256
90 251
91 265
92 238
93 211
94 205
95 217
96 218
97 206
98 202
99 202
100 188
101 176
102 190
103 148
104 155
105 161
106 158
107 166
108 165
109 137
110 116
111 129
112 138
113 128
114 121
115 106
116 116
117 131
118 102
119 125
120 113
121 103
122 93
123 118
124 112
125 113
126 100
127 91
128 90
129 93
130 93
131 93
132 94
133 80
134 69
135 68
136 70
137 95
138 60
139 64
140 60
141 56
142 62
143 74
144 60
145 56
146 65
147 55
148 55
149 49
150 51
151 49
152 56
153 48
154 51
155 36
156 58
157 47
158 40
159 40
160 53
161 45
162 39
163 31
164 42
165 41
166 31
167 38
168 53
169 42
170 41
171 39
172 45
173 38
174 41
175 34
176 31
177 28
178 30
179 30
180 34
181 36
182 32
183 29
184 29
185 33
186 20
187 26
188 29
189 24
190 20
191 26
192 23
193 30
194 19
195 28
196 28
197 32
198 25
199 25
200 23
201 27
202 29
203 15
204 21
205 19
206 23
207 16
208 23
209 16
210 18
211 22
212 22
213 14
214 20
215 15
216 18
217 18
218 17
219 17
220 15
221 11
222 14
223 14
224 19
225 23
226 22
227 17
228 19
229 13
230 14
231 20
232 19
233 14
234 15
235 11
236 10
237 14
238 9
239 12
240 15
241 11
242 15
243 18
244 10
245 14
246 12
247 4
248 8
249 15
250 8
251 16
252 19
253 6
254 7
255 10
256 8
257 9
258 10
259 11
260 13
261 11
262 7
263 9
264 15
265 10
266 7
267 12
268 8
269 10
270 11
271 6
272 7
273 14
274 13
275 13
276 8
277 6
278 14
279 9
280 9
281 10
282 9
283 3
284 8
285 5
286 9
287 7
288 3
289 15
290 7
291 12
292 7
293 13
294 6
295 9
296 6
297 6
298 9
299 9
300 11
301 7
302 4
303 6
304 5
305 3
306 9
307 6
308 8
309 5
310 4
311 9
312 6
313 4
314 8
315 4
316 7
317 3
318 7
319 4
320 7
321 8
322 5
323 5
324 8
325 2
326 5
328 3
329 9
330 6
331 5
332 2
333 1
334 8
335 1
336 4
337 5
338 5
339 5
340 7
341 2
342 4
343 10
344 5
345 5
346 6
347 4
348 4
349 3
350 5
351 4
352 2
353 1
354 6
355 7
356 7
357 2
358 4
359 2
360 7
361 7
362 3
363 3
364 2
365 7
366 5
367 7
368 3
369 2
370 1
371 4
372 3
373 1
374 2
375 3
376 1
377 4
378 1
379 5
380 1
381 4
382 4
383 3
384 2
385 2
386 4
387 2
388 4
389 7
390 1
391 2
392 4
393 4
394 5
395 5
396 2
397 7
398 2
399 2
400 4
401 1
402 4
404 4
405 3
406 3
407 2
408 1
409 1
410 1
411 2
412 2
413 1
414 3
415 3
416 2
417 3
418 1
420 4
421 4
422 1
423 4
424 1
425 3
426 5
427 2
428 3
429 1
430 2
431 3
432 2
433 2
434 5
435 1
436 5
437 1
438 1
439 2
440 1
441 3
443 5
444 2
445 5
447 1
448 1
449 1
450 3
451 3
452 2
453 3
454 4
455 5
456 2
457 1
458 1
460 3
461 3
462 2
463 1
464 1
465 2
467 1
468 2
469 1
470 2
471 4
474 1
475 4
476 2
477 2
478 3
479 2
480 2
483 3
484 3
485 1
486 1
487 1
488 2
489 1
490 1
491 2
492 1
493 1
495 2
496 1
497 1
499 1
500 1
502 2
503 1
504 3
505 1
506 1
507 2
508 2
509 1
510 1
513 1
514 1
515 2
518 3
520 3
523 1
526 1
527 1
528 1
530 1
531 1
532 1
533 1
536 3
537 2
539 1
541 2
542 2
543 1
546 2
548 1
550 1
551 2
553 1
554 1
555 1
556 1
557 1
558 3
562 1
563 1
564 3
566 3
569 1
571 3
573 2
575 2
576 1
578 2
583 1
584 1
585 2
588 1
590 1
591 2
593 1
594 1
596 1
598 1
600 1
601 1
602 1
603 1
606 1
607 2
608 3
610 1
612 1
615 1
616 3
619 3
620 1
621 1
624 1
625 1
626 1
627 1
629 1
630 1
631 1
632 1
633 2
635 1
639 2
640 3
641 2
642 1
644 2
645 1
646 2
647 1
650 1
651 1
652 1
655 1
656 1
657 2
659 1
660 1
661 2
662 1
667 1
670 3
675 1
676 1
680 2
684 1
688 1
694 1
695 1
696 2
697 1
698 2
700 1
701 1
702 1
703 1
704 1
705 1
707 2
708 1
712 1
713 3
714 1
715 2
716 1
720 1
724 1
726 1
727 1
728 3
729 1
730 1
733 3
734 1
735 2
742 1
743 1
745 1
746 1
747 1
756 1
758 1
759 1
767 2
768 2
770 3
773 1
774 1
778 2
781 1
784 1
797 1
804 1
809 1
812 1
813 1
814 1
816 2
821 2
823 1
832 1
833 1
837 1
838 1
839 1
842 1
851 1
859 1
861 2
866 1
874 1
876 1
881 1
888 1
889 1
894 1
898 1
902 1
904 1
916 1
921 1
922 1
924 1
936 1
937 1
940 1
942 2
945 2
947 1
949 1
959 1
966 1
970 1
971 1
1002 1
1014 1
1016 1
1025 1
1030 1
1031 1
1066 1
1068 1
1078 1
1088 1
1095 1
1108 1
1109 1
1122 1
1160 1
1166 1
1169 1
1171 1
1191 1
1207 1
1218 1
1237 1
1241 1
1244 1
1260 1
1276 1
1286 1
1289 1
1304 1
1317 1
1325 1
1335 1
1343 1
1344 1
1351 1
1361 1
1374 1
1375 1
1404 1
1410 1
1413 1
1417 1
1424 1
1432 1
1437 1
1442 1
1443 1
1451 1
1465 1
1487 1
1492 1
1503 1
1507 1
1515 1
1522 1
1523 1
1536 1
1544 1
1546 1
1548 1
1550 1
1551 1
1554 1
1594 1
1604 1
1607 2
1610 1
1642 1
1657 1
1658 1
1660 1
1667 1
1672 1
1673 1
1674 1
1694 1
1734 1
1744 1
1768 1
1769 1
1781 1
1789 1
1817 1
1837 1
1855 1
1858 1
1877 1
1878 1
1889 1
1909 1
1924 1
1926 1
1927 1
1936 1
1937 1
1970 1
2008 1
2022 1
2031 1
2039 1
2064 1
2081 1
2089 1
2160 1
2198 1
2207 1
2212 1
2222 1
2224 1
2277 1
2283 1
2286 1
2288 1
2328 1
2332 1
2347 1
2357 1
2436 1
2444 1
2531 1
2534 1
2558 1
2588 1
2652 1
2655 1
2690 1
2735 1
2781 1
2854 1
2907 1
2936 1
3124 1
3304 1
3683 1
3768 1
4210 1
4479 1
5038 1
5801 1
8364 1
14388 1
20353 1
929468 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._.................................._..........._...................
.__..............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]