Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/e3e9c0015d2b29d2e68ef53dc14689/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/e3e9c0015d2b29d2e68ef53dc14689/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/3d69f286743fc925a3e0acd1cf500f/tih_rna_sample_00575_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/9cca89b9072f1f9039181323c42f25/tih_rna_sample_00575_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00575_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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