Error executing process > 'NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTQC_FOR_FASTP (aih-tih-sc-20b7e4-R1_B23WHYVLT4_1)'

Caused by:
  Process `NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTQC_FOR_FASTP (aih-tih-sc-20b7e4-R1_B23WHYVLT4_1)` terminated with an error exit status (1)


Command executed:

  printf "%s %s\n" aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_1.fastp.fastq.gz aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_1.gz aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_2.fastp.fastq.gz aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_2.gz | while read old_name new_name; do
      [ -f "${new_name}" ] || ln -s $old_name $new_name
  done
  
  fastqc \
      --quiet \
      --threads 2 \
      aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_1.gz aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_2.gz
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTQC_FOR_FASTP":
      fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' )
  END_VERSIONS

Command exit status:
  1

Command output:
  application/gzip
  application/gzip

Command error:
  Failed to process aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_1.gz
  java.io.EOFException
  	at java.base/java.util.zip.GZIPInputStream.readUByte(GZIPInputStream.java:268)
  	at java.base/java.util.zip.GZIPInputStream.readUShort(GZIPInputStream.java:258)
  	at java.base/java.util.zip.GZIPInputStream.readHeader(GZIPInputStream.java:164)
  	at java.base/java.util.zip.GZIPInputStream.<init>(GZIPInputStream.java:79)
  	at java.base/java.util.zip.GZIPInputStream.<init>(GZIPInputStream.java:91)
  	at uk.ac.babraham.FastQC.Utilities.MultiMemberGZIPInputStream.<init>(MultiMemberGZIPInputStream.java:37)
  	at uk.ac.babraham.FastQC.Sequence.FastQFile.<init>(FastQFile.java:84)
  	at uk.ac.babraham.FastQC.Sequence.SequenceFactory.getSequenceFile(SequenceFactory.java:106)
  	at uk.ac.babraham.FastQC.Sequence.SequenceFactory.getSequenceFile(SequenceFactory.java:62)
  	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.processFile(OfflineRunner.java:163)
  	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.<init>(OfflineRunner.java:125)
  	at uk.ac.babraham.FastQC.FastQCApplication.main(FastQCApplication.java:316)
  Failed to process aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_2.gz
  java.io.EOFException
  	at java.base/java.util.zip.GZIPInputStream.readUByte(GZIPInputStream.java:268)
  	at java.base/java.util.zip.GZIPInputStream.readUShort(GZIPInputStream.java:258)
  	at java.base/java.util.zip.GZIPInputStream.readHeader(GZIPInputStream.java:164)
  	at java.base/java.util.zip.GZIPInputStream.<init>(GZIPInputStream.java:79)
  	at java.base/java.util.zip.GZIPInputStream.<init>(GZIPInputStream.java:91)
  	at uk.ac.babraham.FastQC.Utilities.MultiMemberGZIPInputStream.<init>(MultiMemberGZIPInputStream.java:37)
  	at uk.ac.babraham.FastQC.Sequence.FastQFile.<init>(FastQFile.java:84)
  	at uk.ac.babraham.FastQC.Sequence.SequenceFactory.getSequenceFile(SequenceFactory.java:106)
  	at uk.ac.babraham.FastQC.Sequence.SequenceFactory.getSequenceFile(SequenceFactory.java:62)
  	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.processFile(OfflineRunner.java:163)
  	at uk.ac.babraham.FastQC.Analysis.OfflineRunner.<init>(OfflineRunner.java:125)
  	at uk.ac.babraham.FastQC.FastQCApplication.main(FastQCApplication.java:316)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/4e9bd6af3d81cf8ce677af622e946a

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/fastqc:0.12.1--hdfd78af_0

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line