{ "source_file": "multiqc_general_stats.txt", "total_samples": 480, "metrics": [ "Sample", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct", "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean", "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias", "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median", "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean", "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION", "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES", "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES", "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent", "STAR_mqc-generalstats-star-uniquely_mapped_percent", "STAR_mqc-generalstats-star-uniquely_mapped", "fastp_mqc-generalstats-fastp-pct_duplication", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate", "fastp_mqc-generalstats-fastp-after_filtering_q30_bases", "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads", "fastp_mqc-generalstats-fastp-after_filtering_gc_content", "fastp_mqc-generalstats-fastp-pct_surviving", "fastp_mqc-generalstats-fastp-pct_adapter", "Kallisto_mqc-generalstats-kallisto-fragment_length", "Kallisto_mqc-generalstats-kallisto-percent_aligned", "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads", "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates", "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc", "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length", "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length", "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails", "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences" ], "samples": [ { "Sample": "FFPE_HD789_01_RNA_13_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 423956076, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 171.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 155, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.91, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.86, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.45, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.2, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 62.13, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590655984, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005449, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.464602, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 316235912, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.940292, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.971049, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.049531, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.028951, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 297354088, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 150620479, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15663421, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4490578, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 650.946563, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 263, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.710383, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.610723, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977127, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 302, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 912.870801, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.467148, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.5391, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.62981131573254, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.14, "STAR_mqc-generalstats-star-uniquely_mapped": 283915420, "fastp_mqc-generalstats-fastp-pct_duplication": 35.104800000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976236, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78880894347, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590655984, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.53582, "fastp_mqc-generalstats-fastp-pct_surviving": 98.44266400000001, "fastp_mqc-generalstats-fastp-pct_adapter": 40.201056333333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "FFPE_HD789_01_RNA_13_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 171.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.02872834350224, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289506275, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.03522134543286, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 406013954, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "FFPE_HD789_01_RNA_13_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.40351745330464, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 406013954, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "FFPE_HD789_01_RNA_13_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.25991221282119, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.74283745172386, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295327992, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.25991221282119, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.74283745172386, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295327992 }, { "Sample": "FFPE_HD789_01_RNA_13_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.84104071164838, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.8441365321036, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295327992, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.84104071164838, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.8441365321036, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295327992 }, { "Sample": "FFPE_V4_0002_RNA_0001_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 271777777, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 160.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 146, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 2.13, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 1.5, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.73, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590042116, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.550273, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 265357706, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.928221, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962017, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.057943, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037983, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 246310663, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 124730544, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15375749, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4924714, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 509.381032, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.588441, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.513782, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977381, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 242, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 693.057891, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.553719, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.9632, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.21555480351631, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.85, "STAR_mqc-generalstats-star-uniquely_mapped": 282763573, "fastp_mqc-generalstats-fastp-pct_duplication": 40.3648, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976382, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77194401289, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590042116, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.530384, "fastp_mqc-generalstats-fastp-pct_surviving": 98.34035266666666, "fastp_mqc-generalstats-fastp-pct_adapter": 46.009876, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "FFPE_V4_0002_RNA_0001_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 160.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.23649319974983, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 286868131, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.21183130941158, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 524139163, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "FFPE_V4_0002_RNA_0001_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.63561615475649, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 524139163, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "FFPE_V4_0002_RNA_0001_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.10100289724397, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.9249538383799, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295021058, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.10100289724397, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.9249538383799, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295021058 }, { "Sample": "FFPE_V4_0002_RNA_0001_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.91651718278445, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.05079080490586, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295021058, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.91651718278445, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.05079080490586, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295021058 }, { "Sample": "NTC_0001_0001_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 65229, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 44.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 31, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.35, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Skipped", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": "N/A", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 46656, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.635352, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.184907, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 38029, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.007547, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.037572, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.212969, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.962428, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 287, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 151, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8099, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3868, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 0.000421, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.828395, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 63, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 68.563072, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.507083, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0.0284, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 20.0867, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 3.0077365668358054, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 9.11, "STAR_mqc-generalstats-star-uniquely_mapped": 2126, "fastp_mqc-generalstats-fastp-pct_duplication": 65.8145, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.842685, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 4604474, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 46656, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.688286, "fastp_mqc-generalstats-fastp-pct_surviving": 2.4303367028973804, "fastp_mqc-generalstats-fastp-pct_adapter": 50.13361226086531, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "NTC_0001_0001_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 44.7125, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 12.409979423868313, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 2895, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 98.74430520061634, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 73, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 45.45454545454545, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 959867, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "NTC_0001_0001_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 96.52899828830452, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 98, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 54.54545454545454, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 959867, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "NTC_0001_0001_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 67.23251028806584, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 64, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.81258573388203, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 54.54545454545454, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 23328, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 67.23251028806584, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 64, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.81258573388203, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 54.54545454545454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 23328 }, { "Sample": "NTC_0001_0001_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 69.85168038408779, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 73, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.46892146776406, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 54.54545454545454, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 23328, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 69.85168038408779, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 73, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.46892146776406, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 54.54545454545454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 23328 }, { "Sample": "aih-tih-sc-0183f6-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 107359842, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 112, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 106, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.24, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.42, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.12, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.64, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 430115382, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007854, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.751396, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 106928388, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.846476, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.884415, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.121931, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.115585, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 90512287, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 45323319, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13037860, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5923359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 128.040049, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.596445, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.3758, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977953, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 109, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 148.649323, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.757344, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.1347, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 81.63910883809679, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.89, "STAR_mqc-generalstats-star-uniquely_mapped": 199768661, "fastp_mqc-generalstats-fastp-pct_duplication": 44.1822, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976916, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 46675963973, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 430115382, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.523666, "fastp_mqc-generalstats-fastp-pct_surviving": 98.24900404290815, "fastp_mqc-generalstats-fastp-pct_adapter": 83.24450092282234, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0183f6-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 112, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.02725721164745, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 208664579, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.3789038537459, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 218890454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0183f6-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.45507389699166, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 218890454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0183f6-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.3714544707179, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 110.94475130396522, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 215057691, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.3714544707179, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 110.94475130396522, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 215057691 }, { "Sample": "aih-tih-sc-0183f6-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.56841725046789, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 111.21449262653898, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 215057691, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.56841725046789, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 111.21449262653898, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 215057691 }, { "Sample": "aih-tih-sc-027d27-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 214484444, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 123, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.27, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.45, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.69, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0.7, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 519268344, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007053, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.567718, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 224470226, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.914458, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.943103, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.069227, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.056897, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 205268576, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 103259106, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15539356, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6229582, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 356.166209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 191, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.742969, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.614497, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977606, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 135, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 236.424397, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.571751, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.0809, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.08069120447354, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.95, "STAR_mqc-generalstats-star-uniquely_mapped": 246513180, "fastp_mqc-generalstats-fastp-pct_duplication": 36.782399999999996, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976539, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 62384190622, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 519268344, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539646, "fastp_mqc-generalstats-fastp-pct_surviving": 98.29709744765425, "fastp_mqc-generalstats-fastp-pct_adapter": 66.41232762923265, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-027d27-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.19532912639866, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 252352288, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.47234456229974, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 264132084, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-027d27-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.48949710055055, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 264132084, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-027d27-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.45557146401715, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.9184201993257, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 259634172, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.45557146401715, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.9184201993257, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 259634172 }, { "Sample": "aih-tih-sc-027d27-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.72040576800184, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.12011160071795, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 259634172, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.72040576800184, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.12011160071795, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 259634172 }, { "Sample": "aih-tih-sc-03bdd8-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 228835933, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 134.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.49, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.15, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.14, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.75, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589763366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007302, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.581843, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 246613742, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.924374, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.955598, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058164, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.044402, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 227963235, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 114780766, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14343919, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5333308, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 412.835613, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 207, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.738221, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.619759, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977147, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 151, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 297.181269, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.586123, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.7896, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.40892467850202, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.64, "STAR_mqc-generalstats-star-uniquely_mapped": 279061673, "fastp_mqc-generalstats-fastp-pct_duplication": 38.8908, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976044, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72282517981, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589763366, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.56094, "fastp_mqc-generalstats-fastp-pct_surviving": 98.29389433333333, "fastp_mqc-generalstats-fastp-pct_adapter": 61.999124333333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-03bdd8-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 134.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.69092507519363, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288072644, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.31968649886443, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 572753187, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-03bdd8-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.57262689717862, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 572753187, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-03bdd8-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.15017087786464, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.46768308426942, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294881683, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.15017087786464, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.46768308426942, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294881683 }, { "Sample": "aih-tih-sc-03bdd8-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.64785062616583, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.66108312329457, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294881683, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.64785062616583, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.66108312329457, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294881683 }, { "Sample": "aih-tih-sc-070e1d-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 111938074, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 120.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 113, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.13, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.98, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 552967876, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00656, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.767154, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 128756605, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.87422, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.913133, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.097606, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.086867, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 112561551, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 56465167, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12567389, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5371563, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 174.076839, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 73, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.621977, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.438754, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976941, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 124, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 216.336758, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.77222, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 9.999999999999999e-05, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.846, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.24736613140176, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.67, "STAR_mqc-generalstats-star-uniquely_mapped": 261740879, "fastp_mqc-generalstats-fastp-pct_duplication": 48.4082, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975715, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 63154288137, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 552967876, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550318, "fastp_mqc-generalstats-fastp-pct_surviving": 98.05594237394496, "fastp_mqc-generalstats-fastp-pct_adapter": 75.47501820346751, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-070e1d-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 120.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.21289740889036, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 268778047, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.45425444993919, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281965510, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-070e1d-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.52606504356633, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281965510, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-070e1d-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.48695811577464, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.90549372528106, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 276483938, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.48695811577464, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.90549372528106, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 276483938 }, { "Sample": "aih-tih-sc-070e1d-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.91198821192211, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.18855407795877, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 276483938, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.91198821192211, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.18855407795877, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 276483938 }, { "Sample": "aih-tih-sc-099ac4-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 333236771, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.34, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.53, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590448472, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008334, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.516952, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 285215106, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.925757, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.957446, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056989, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.042554, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 264039955, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 133088935, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16254210, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5915171, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 503.264303, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 205, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.728516, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.607584, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977674, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 156, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 324.766272, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.521296, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.9705, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.998738699516, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.15, "STAR_mqc-generalstats-star-uniquely_mapped": 280895097, "fastp_mqc-generalstats-fastp-pct_duplication": 35.243900000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976645, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74018577102, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590448472, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540157, "fastp_mqc-generalstats-fastp-pct_surviving": 98.40807866666667, "fastp_mqc-generalstats-fastp-pct_adapter": 58.15637, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-099ac4-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 142.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.71863750373123, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288489101, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.51355291903295, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 457879352, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-099ac4-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.9931734630603, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 457879352, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-099ac4-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.81655437514185, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.27028739266515, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295224236, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.81655437514185, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.27028739266515, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295224236 }, { "Sample": "aih-tih-sc-099ac4-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.58066289080647, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.43283989733146, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295224236, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.58066289080647, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.43283989733146, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295224236 }, { "Sample": "aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 313236791, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 138.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.21, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.86, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590449702, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005945, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.535093, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 274504239, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.939309, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966519, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.047904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033481, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 257844233, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 129900611, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13149765, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4499877, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 481.422926, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 236, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.746959, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.635143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977741, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 160, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 365.037954, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.538293, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.3804, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.94985913647776, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.69, "STAR_mqc-generalstats-star-uniquely_mapped": 279546373, "fastp_mqc-generalstats-fastp-pct_duplication": 35.2969, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97685, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72689617343, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590449702, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548348, "fastp_mqc-generalstats-fastp-pct_surviving": 98.40828366666666, "fastp_mqc-generalstats-fastp-pct_adapter": 60.56114933333333, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 138.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.22984922092483, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289998926, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.67365529342179, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 508523066, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.22840926787705, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 508523066, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.433162077548, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.9366131410123, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295224851, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.433162077548, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.9366131410123, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295224851 }, { "Sample": "aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.06415947894693, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.10532926308429, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295224851, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.06415947894693, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.10532926308429, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295224851 }, { "Sample": "aih-tih-sc-0fc41c-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 208005915, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.66, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.62, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 450486118, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008704, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.547347, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 203913835, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.921746, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.953716, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.059026, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.046284, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 187956768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 94555960, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12036166, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4588865, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 329.957792, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.688183, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.556063, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976301, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 134, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 234.037393, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.552153, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.90140000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.42947531412503, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.22, "STAR_mqc-generalstats-star-uniquely_mapped": 212226478, "fastp_mqc-generalstats-fastp-pct_duplication": 34.69, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975154, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 54012690751, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 450486118, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552202, "fastp_mqc-generalstats-fastp-pct_surviving": 98.31163195219253, "fastp_mqc-generalstats-fastp-pct_adapter": 66.74818519755165, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.8102135435836, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 220310717, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.73928096177983, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229111301, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.79298869718616, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229111301, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.75108972205469, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.84247652221772, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225243059, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.75108972205469, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.84247652221772, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 225243059 }, { "Sample": "aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.97438228073098, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.05260524809334, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225243059, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.97438228073098, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.05260524809334, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 225243059 }, { "Sample": "aih-tih-sc-13a2f6-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 53001168, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 116.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 110, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.11, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.49, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.62, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.8, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 208482094, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009239, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.731103, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 56060102, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.873293, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.91507, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.092349, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.08493, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 48956887, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 24520386, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 5177100, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2275786, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 73.143928, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 29, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.496458, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.201404, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976675, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 118, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 180.420929, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.737921, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.8182, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.99416373416831, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.52, "STAR_mqc-generalstats-star-uniquely_mapped": 98527015, "fastp_mqc-generalstats-fastp-pct_duplication": 44.4979, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975522, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 23282572618, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 208482094, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544582, "fastp_mqc-generalstats-fastp-pct_surviving": 98.20764741411942, "fastp_mqc-generalstats-fastp-pct_adapter": 79.75941826986639, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-13a2f6-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 116.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.50029563690012, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 101635329, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.03048787613639, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 106143513, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-13a2f6-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.27233566586202, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 106143513, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-13a2f6-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.01617160343002, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 114.34278437360669, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 104241047, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.01617160343002, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 114.34278437360669, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 104241047 }, { "Sample": "aih-tih-sc-13a2f6-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.3843718137959, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 114.60529700934413, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 104241047, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.3843718137959, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 114.60529700934413, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 104241047 }, { "Sample": "aih-tih-sc-16054b-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 310279826, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.42, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.6, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590914094, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006646, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.544414, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 269212291, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.928751, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.959058, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056662, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.040942, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 250031114, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 126196890, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15254007, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5387380, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 478.816688, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 239, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.74897, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.637005, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977937, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 184, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 420.971666, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.548056, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.578, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.69208510936885, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.78, "STAR_mqc-generalstats-star-uniquely_mapped": 282990097, "fastp_mqc-generalstats-fastp-pct_duplication": 38.7932, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976989, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74308133838, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590914094, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545384, "fastp_mqc-generalstats-fastp-pct_surviving": 98.48568233333333, "fastp_mqc-generalstats-fastp-pct_adapter": 56.224211000000004, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-16054b-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 143.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.89140280685199, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289227048, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.3565862168092, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 372705946, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-16054b-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.97129444945254, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 372705946, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-16054b-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.92313846336394, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.62972444180693, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295457047, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.92313846336394, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.62972444180693, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295457047 }, { "Sample": "aih-tih-sc-16054b-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.6029280860466, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.78495405120597, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295457047, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.6029280860466, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.78495405120597, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295457047 }, { "Sample": "aih-tih-sc-176637-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 304042290, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.45, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.12, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.39, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.69, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 379318562, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006625, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.437706, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 213288421, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.933119, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.961591, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.0551, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.038409, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 199023529, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 100452378, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11752090, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4012371, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 386.462373, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 181, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.732454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.600555, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978019, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 178, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 438.808895, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.440625, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.59259999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.2358260942702, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.61, "STAR_mqc-generalstats-star-uniquely_mapped": 181338691, "fastp_mqc-generalstats-fastp-pct_duplication": 29.1762, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977079, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 47853803105, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 379318562, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.529868, "fastp_mqc-generalstats-fastp-pct_surviving": 98.22653204087457, "fastp_mqc-generalstats-fastp-pct_adapter": 54.38746373616612, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-176637-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 148.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.73765988282956, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 185368543, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.49447007360637, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 193083556, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-176637-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.41104015967547, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 193083556, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-176637-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.47346283501486, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.02499797518476, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 189659281, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.47346283501486, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.02499797518476, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 189659281 }, { "Sample": "aih-tih-sc-176637-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.77098445459762, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.19778508492817, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 189659281, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.77098445459762, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.19778508492817, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 189659281 }, { "Sample": "aih-tih-sc-18a6f2-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 80518825, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 117.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 110, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.98, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.19, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 386306214, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006297, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.767407, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 89852236, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.877257, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.913449, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.095672, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.086551, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 78823469, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 39518664, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8596300, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3744484, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 119.651407, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 50, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.590208, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.341477, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977671, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 124, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 214.42532799999998, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.772269, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.7586, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.28578666153018, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.78, "STAR_mqc-generalstats-star-uniquely_mapped": 185002887, "fastp_mqc-generalstats-fastp-pct_duplication": 50.5718, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976654, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 43588948658, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 386306214, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542315, "fastp_mqc-generalstats-fastp-pct_surviving": 98.3531717544948, "fastp_mqc-generalstats-fastp-pct_adapter": 77.53533136374196, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-18a6f2-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 117.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.71955312114136, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 188748353, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.77861610308831, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 196387268, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-18a6f2-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.92720205973328, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 196387268, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-18a6f2-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.82448166304017, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 115.40793999239163, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 193153107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.82448166304017, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 115.40793999239163, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 193153107 }, { "Sample": "aih-tih-sc-18a6f2-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.10470747467696, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 115.64809548209855, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 193153107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.10470747467696, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 115.64809548209855, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 193153107 }, { "Sample": "aih-tih-sc-1ba302-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 299506939, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.26, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.59, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.21, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591679186, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006261, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.549956, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 266281538, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.927048, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.957386, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.042614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 246855808, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 124694460, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15721354, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5550221, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 484.98811, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 234, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.731159, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.627648, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977741, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 192, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 465.874921, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.553421, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.7295, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.0257738400533, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.63, "STAR_mqc-generalstats-star-uniquely_mapped": 282913008, "fastp_mqc-generalstats-fastp-pct_duplication": 39.7718, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976836, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75499233307, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591679186, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539944, "fastp_mqc-generalstats-fastp-pct_surviving": 98.61319766666666, "fastp_mqc-generalstats-fastp-pct_adapter": 53.1005245, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1ba302-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 148.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.87648369297209, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289557391, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.41628425517283, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 415211526, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1ba302-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.94411659382452, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 415211526, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1ba302-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.44754608365929, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.55297083578668, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295839593, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.44754608365929, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.55297083578668, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295839593 }, { "Sample": "aih-tih-sc-1ba302-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.93374683112907, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.6902003242007, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295839593, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.93374683112907, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.6902003242007, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295839593 }, { "Sample": "aih-tih-sc-1d89ab-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 202543121, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.79, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.46, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590170600, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006937, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.630883, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 217841862, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.91291, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.945151, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.068296, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.054849, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 198869921, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 100042751, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14877668, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5805687, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 346.030883, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 170, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.714988, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.58939, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975881, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 140, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 267.3925, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.635291, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.70609999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.28190651568121, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.29, "STAR_mqc-generalstats-star-uniquely_mapped": 281177671, "fastp_mqc-generalstats-fastp-pct_duplication": 40.7411, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974846, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70724887763, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590170600, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542488, "fastp_mqc-generalstats-fastp-pct_surviving": 98.36176666666667, "fastp_mqc-generalstats-fastp-pct_adapter": 66.62871849999999, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1d89ab-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.39980880104837, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287412518, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.80620318285828, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313269569, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1d89ab-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.30602707370852, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313269569, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1d89ab-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.5258518858455, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.81975455910545, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295085300, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.5258518858455, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.81975455910545, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295085300 }, { "Sample": "aih-tih-sc-1d89ab-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.20526289063895, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.02980957370632, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295085300, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.20526289063895, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.02980957370632, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295085300 }, { "Sample": "aih-tih-sc-1d9134-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 304950103, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 135.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 124, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.9, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.47, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 475528158, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005587, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.523428, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 226623401, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.9349, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960434, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.053377, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039566, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 211870193, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 106755817, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12096514, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4397953, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 392.698179, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 178, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.719018, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.593817, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977921, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 173, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 434.869334, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.526369, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.1384, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.6212869945056, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.1, "STAR_mqc-generalstats-star-uniquely_mapped": 228487811, "fastp_mqc-generalstats-fastp-pct_duplication": 35.7161, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977095, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 58210916952, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 475528158, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.530048, "fastp_mqc-generalstats-fastp-pct_surviving": 98.59670917233231, "fastp_mqc-generalstats-fastp-pct_adapter": 62.28963776814187, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1d9134-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 135.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.19014208618115, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 233460887, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.49392156888956, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 241148088, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1d9134-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.67668830123178, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 241148088, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-1d9134-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.5312891897565, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.19588131308934, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 237764079, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.5312891897565, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.19588131308934, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 237764079 }, { "Sample": "aih-tih-sc-1d9134-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.73023067707531, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.35818421082858, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 237764079, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.73023067707531, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.35818421082858, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 237764079 }, { "Sample": "aih-tih-sc-20b7e4-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 54103425, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 112.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 107, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.52, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.33, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.65, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 222156290, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008573, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.771272, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 50813403, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.823968, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.865908, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.138552, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.134092, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 41868622, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 20953272, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 7040309, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3244762, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 59.005311, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 22, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.441326, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.16261, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977347, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 113, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 152.327983, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.777941, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.4564, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.9585685949273, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94, "STAR_mqc-generalstats-star-uniquely_mapped": 104413942, "fastp_mqc-generalstats-fastp-pct_duplication": 38.3772, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976223, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 24262004565, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 222156290, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542176, "fastp_mqc-generalstats-fastp-pct_surviving": 98.05959958598878, "fastp_mqc-generalstats-fastp-pct_adapter": 82.08174984327682, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 112.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.53341618191409, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 107227528, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.22118684741372, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 113276156, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.23717926146855, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 113276156, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.17005417481468, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 111.73538403976768, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 111078145, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.17005417481468, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 111.73538403976768, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 111078145 }, { "Sample": "aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.19569821782562, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 111.99787753927652, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 111078145, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.19569821782562, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 111.99787753927652, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 111078145 }, { "Sample": "aih-tih-sc-2a5468-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 303989155, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.28, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.56, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.78, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.85, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587385778, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006822, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.532051, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 274866373, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.928547, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.959519, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056876, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.040481, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 255226276, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 128632557, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15633227, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5426875, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 480.046452, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 229, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.731843, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.619619, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97685, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 163, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 398.687986, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.535706, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.6648, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.26537546524735, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.25, "STAR_mqc-generalstats-star-uniquely_mapped": 279746828, "fastp_mqc-generalstats-fastp-pct_duplication": 36.6102, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975741, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72857340360, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587385778, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.525917, "fastp_mqc-generalstats-fastp-pct_surviving": 97.89762966666666, "fastp_mqc-generalstats-fastp-pct_adapter": 57.97567916666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-2a5468-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 143.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.76451005594487, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287127414, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.30311983253088, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 525709697, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-2a5468-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.73534787233864, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 525709697, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-2a5468-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.96519363772481, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.01263988042966, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293692889, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.96519363772481, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.01263988042966, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293692889 }, { "Sample": "aih-tih-sc-2a5468-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.98038571189997, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.21741893791648, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293692889, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.98038571189997, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.21741893791648, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293692889 }, { "Sample": "aih-tih-sc-2f84cc-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 116702598, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 121, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.15, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.49, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.54, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.75, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 244181042, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009498, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.549509, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 110001331, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.895391, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.926835, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.083524, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.073165, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 98494208, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 49471085, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9187781, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3905296, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 163.784494, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 62, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.602112, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.414599, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977326, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 128, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 187.362695, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.554779, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.49029999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.0377191333337, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.53, "STAR_mqc-generalstats-star-uniquely_mapped": 115406939, "fastp_mqc-generalstats-fastp-pct_duplication": 34.704499999999996, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97609, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 29033752960, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 244181042, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.532354, "fastp_mqc-generalstats-fastp-pct_surviving": 98.14111915686937, "fastp_mqc-generalstats-fastp-pct_adapter": 70.06526931318592, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-2f84cc-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 129.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.49575170540881, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 117812166, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.97766816709063, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 124403025, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-2f84cc-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 74.70376815391954, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 124403025, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-2f84cc-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.92846623342899, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.6952674810848, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 122090521, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.92846623342899, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.6952674810848, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 122090521 }, { "Sample": "aih-tih-sc-2f84cc-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.88331797906604, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.9234304930192, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 122090521, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 75.88331797906604, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.9234304930192, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 122090521 }, { "Sample": "aih-tih-sc-3376ed-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 248787693, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.78, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.82, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589630066, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006023, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.564279, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 256914008, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.93743, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.969239, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.048747, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.030761, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 240838975, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 121650600, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12523816, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3860904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 486.548614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 185, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.68442, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.578137, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977541, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 210, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 584.747372, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.567698, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.682, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.05501025798407, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.78, "STAR_mqc-generalstats-star-uniquely_mapped": 282384888, "fastp_mqc-generalstats-fastp-pct_duplication": 41.958600000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976559, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76403679480, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589630066, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.538287, "fastp_mqc-generalstats-fastp-pct_surviving": 98.27167766666666, "fastp_mqc-generalstats-fastp-pct_adapter": 49.23978566666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3376ed-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 154.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.32283348997336, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289870494, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.65990344168182, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 393580035, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3376ed-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.84039054330182, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 393580035, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3376ed-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.04230458731541, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.6155438925667, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294815033, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.04230458731541, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.6155438925667, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294815033 }, { "Sample": "aih-tih-sc-3376ed-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.56260870611672, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.75189821816176, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294815033, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.56260870611672, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.75189821816176, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294815033 }, { "Sample": "aih-tih-sc-37dd87-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 395116070, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.65, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.93, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591116382, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005966, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.478804, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 308087606, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.937839, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.9645, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050715, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.0355, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 288936482, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 145724807, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15624666, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5363597, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 552.706564, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 266, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.733318, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.634047, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978704, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 163, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 412.458218, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.481677, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.31490000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.67090269573843, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.76, "STAR_mqc-generalstats-star-uniquely_mapped": 283024911, "fastp_mqc-generalstats-fastp-pct_duplication": 32.5199, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97784, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73497069280, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591116382, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.521947, "fastp_mqc-generalstats-fastp-pct_surviving": 98.519397, "fastp_mqc-generalstats-fastp-pct_adapter": 57.97910466666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-37dd87-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 142.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.02067370212048, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289708130, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.55229039041606, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 312878728, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-37dd87-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.72620975478925, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 312878728, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-37dd87-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.30611389230401, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.06639848800536, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295558191, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.30611389230401, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.06639848800536, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295558191 }, { "Sample": "aih-tih-sc-37dd87-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.50436528574153, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.22970951260153, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295558191, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.50436528574153, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.22970951260153, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295558191 }, { "Sample": "aih-tih-sc-3924cb-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 345430119, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 129, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.72, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.5, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.24, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.72, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590316526, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006075, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.535624, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 274128881, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.933228, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960943, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05369, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039057, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 255824821, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 128918154, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14717917, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5239775, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 476.667887, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 223, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.726837, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.619485, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975203, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 162, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 378.248967, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.538898, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.04429999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.55215407471493, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.05, "STAR_mqc-generalstats-star-uniquely_mapped": 283490823, "fastp_mqc-generalstats-fastp-pct_duplication": 35.3412, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974266, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72916760512, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590316526, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.532141, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38608766666667, "fastp_mqc-generalstats-fastp-pct_adapter": 60.277319, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3924cb-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 139.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.0620823751087, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289438339, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.91914012451943, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313985622, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3924cb-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.0462318582827, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313985622, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3924cb-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.62158604316976, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.69487241155095, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295158263, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.62158604316976, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.69487241155095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295158263 }, { "Sample": "aih-tih-sc-3924cb-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.96386729742517, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.86146848953369, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295158263, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.96386729742517, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.86146848953369, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295158263 }, { "Sample": "aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 178710650, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.39, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.25, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.6, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590208944, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007018, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.665058, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 197685921, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.902203, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.935721, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.076844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.064279, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 178352845, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 89728388, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15190983, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6163866, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 308.552901, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.709029, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.564637, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978135, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 134, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 239.11988100000002, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.669758, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.5925, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.72206965342934, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.52, "STAR_mqc-generalstats-star-uniquely_mapped": 281889216, "fastp_mqc-generalstats-fastp-pct_duplication": 44.8086, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977147, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71030736436, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590208944, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.52824, "fastp_mqc-generalstats-fastp-pct_surviving": 98.36815733333333, "fastp_mqc-generalstats-fastp-pct_adapter": 66.25513116666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.5885621279233, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287988211, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.54344492490625, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313864692, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.54019395819012, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313864692, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.21124681178033, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.06173640431989, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295104472, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.21124681178033, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.06173640431989, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295104472 }, { "Sample": "aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.40946391890844, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.2527032494445, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295104472, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.40946391890844, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.2527032494445, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295104472 }, { "Sample": "aih-tih-sc-3e91d2-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 341573960, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 150, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.26, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.72, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.69, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590392290, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00841, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.517499, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 284864720, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.932307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966564, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050263, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033436, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 265581411, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 134156403, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14318224, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4640785, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 523.647626, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 242, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.74505, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.6344, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977576, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 190, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 510.246459, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.521888, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.14540000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.33113100368044, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.88, "STAR_mqc-generalstats-star-uniquely_mapped": 280080189, "fastp_mqc-generalstats-fastp-pct_duplication": 34.8705, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976556, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75230391781, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590392290, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.531337, "fastp_mqc-generalstats-fastp-pct_surviving": 98.39871500000001, "fastp_mqc-generalstats-fastp-pct_adapter": 53.668260499999995, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3e91d2-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 150, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.23319742200563, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 284076689, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.06954615022767, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 418332774, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3e91d2-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.37027240778842, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 418332774, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-3e91d2-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.8523293741825, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.40631364613517, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295196145, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.8523293741825, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.40631364613517, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295196145 }, { "Sample": "aih-tih-sc-3e91d2-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.29973745277462, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.54959758366763, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295196145, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.29973745277462, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.54959758366763, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295196145 }, { "Sample": "aih-tih-sc-445ab1-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 213606482, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 151.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 139, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.82, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.68, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.85, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589726296, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00663, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.599197, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 236364162, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.921436, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.954624, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.062023, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.045376, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 217794366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 109938591, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14659980, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5225733, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 429.042888, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.745985, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.624806, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 187, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 435.176683, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.603196, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.8702, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.23265595040056, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.77, "STAR_mqc-generalstats-star-uniquely_mapped": 282394249, "fastp_mqc-generalstats-fastp-pct_duplication": 44.2316, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976314, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76045410090, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589726296, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.547459, "fastp_mqc-generalstats-fastp-pct_surviving": 98.287716, "fastp_mqc-generalstats-fastp-pct_adapter": 51.10796366666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-445ab1-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 151.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.82404615716848, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288447062, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.07452697675443, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 336989752, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-445ab1-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.27941922355265, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 336989752, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-445ab1-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.3328994405716, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.00175133109548, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294863148, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.3328994405716, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.00175133109548, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294863148 }, { "Sample": "aih-tih-sc-445ab1-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.86359844064009, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.14353064561325, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294863148, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.86359844064009, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.14353064561325, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294863148 }, { "Sample": "aih-tih-sc-446670-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 199406808, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.74, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.81, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.3, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.19, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 444003016, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008104, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.566162, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 192625188, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.9289, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962972, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052421, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037028, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 178929614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 90229182, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10097532, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3469481, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 343.671539, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 127, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.677614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.538282, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976711, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 164, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 343.410473, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.570788, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.2007, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.53339892180738, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.32, "STAR_mqc-generalstats-star-uniquely_mapped": 209390996, "fastp_mqc-generalstats-fastp-pct_duplication": 38.6228, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975538, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 56467645003, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 444003016, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.554565, "fastp_mqc-generalstats-fastp-pct_surviving": 98.29848775976949, "fastp_mqc-generalstats-fastp-pct_adapter": 55.90468983150142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-446670-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 146.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.04915559402416, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 217670604, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.42665852105699, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225844276, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-446670-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.57851003392494, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225844276, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-446670-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.44805540783145, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.28241392846755, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 222001508, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.44805540783145, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.28241392846755, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 222001508 }, { "Sample": "aih-tih-sc-446670-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.89956827118121, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.4398301429556, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 222001508, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.89956827118121, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.4398301429556, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 222001508 }, { "Sample": "aih-tih-sc-4cd8a8-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 175696336, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 128.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 120, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.33, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.46, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.52, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 410385306, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006814, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.581962, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 171556849, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.904096, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.931755, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.079603, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.068245, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 155103938, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 77970169, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13656498, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5710849, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 262.726311, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 130, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.706579, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.550812, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977542, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 130, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 203.04781400000002, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.585954, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.0063, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.78591890340483, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.24, "STAR_mqc-generalstats-star-uniquely_mapped": 193381614, "fastp_mqc-generalstats-fastp-pct_duplication": 38.235200000000006, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976529, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 49048914597, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 410385306, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.524542, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38999954706374, "fastp_mqc-generalstats-fastp-pct_adapter": 68.77360059980538, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4cd8a8-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 128.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.14048631166146, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 199325141, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.22327294959538, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 208550314, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4cd8a8-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.40815284506468, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 208550314, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4cd8a8-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.23015093470896, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.28501598446607, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 205192653, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.23015093470896, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.28501598446607, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 205192653 }, { "Sample": "aih-tih-sc-4cd8a8-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.538305425371, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.48642681178258, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 205192653, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.538305425371, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.48642681178258, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 205192653 }, { "Sample": "aih-tih-sc-4dcd88-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 319901932, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.45, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590720092, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006358, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.518934, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 284175391, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.932118, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.963046, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.054665, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.036954, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 264884980, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 133851729, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15534384, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5136138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 512.600994, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 259, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.760233, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.652294, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97605, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 167, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 364.290695, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.522255, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.5275, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.48072519147405, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.76, "STAR_mqc-generalstats-star-uniquely_mapped": 282838511, "fastp_mqc-generalstats-fastp-pct_duplication": 35.9435, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975129, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74566738493, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590720092, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548594, "fastp_mqc-generalstats-fastp-pct_surviving": 98.45334866666666, "fastp_mqc-generalstats-fastp-pct_adapter": 54.770055500000005, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4dcd88-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 148.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.77531623217584, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288789219, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.6133206703412, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 379959897, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4dcd88-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.9408956897895, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 379959897, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4dcd88-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.98397939438186, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.36422471643303, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295360046, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.98397939438186, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.36422471643303, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295360046 }, { "Sample": "aih-tih-sc-4dcd88-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.40705804192277, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.52375749562282, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295360046, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.40705804192277, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.52375749562282, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295360046 }, { "Sample": "aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 223805739, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 138.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 126, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.16, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.47, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.75, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.75, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 431480824, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005216, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.547896, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 195074011, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.933973, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.96115, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.054491, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.03885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 182193772, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 91998870, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10629763, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3718580, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 339.644359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 154, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.712142, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.574903, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977622, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 169, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 404.009089, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.550769, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.82690000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.4212335204644, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.26, "STAR_mqc-generalstats-star-uniquely_mapped": 207672258, "fastp_mqc-generalstats-fastp-pct_duplication": 37.2123, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976812, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 53300208226, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 431480824, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.527559, "fastp_mqc-generalstats-fastp-pct_surviving": 98.75723860932825, "fastp_mqc-generalstats-fastp-pct_adapter": 60.11594752409063, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 138.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.00283685376479, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 211431724, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.67197505143811, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 218455290, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.53239205060339, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 218455290, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.70851018366449, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.38078060219891, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 215740412, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.70851018366449, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.38078060219891, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 215740412 }, { "Sample": "aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.4771550210547, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.5296661758484, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 215740412, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.4771550210547, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.5296661758484, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 215740412 }, { "Sample": "aih-tih-sc-505123-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 145547661, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 117, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 111, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.5, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.3, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.61, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.44, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 266818884, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006905, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.570938, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 114481713, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.887196, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.911392, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.096711, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.088608, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 101567674, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 50925830, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11071644, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4951140, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 154.502054, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 71, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.633289, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.427748, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977792, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 114, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 145.037799, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.574908, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 94.8793, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.29186739225165, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.72, "STAR_mqc-generalstats-star-uniquely_mapped": 126370437, "fastp_mqc-generalstats-fastp-pct_duplication": 35.4263, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976697, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 29936166419, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 266818884, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.527265, "fastp_mqc-generalstats-fastp-pct_surviving": 98.20466892609753, "fastp_mqc-generalstats-fastp-pct_adapter": 78.5124665095356, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-505123-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 117, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.34495735316845, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 128533270, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.53907740287615, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 135848370, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-505123-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.3346587322688, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 135848370, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-505123-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.42652773198623, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 114.74482465041717, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 133409442, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 77.42652773198623, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 114.74482465041717, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 133409442 }, { "Sample": "aih-tih-sc-505123-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 76.50073479131338, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 114.99164472931383, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 133409442, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 76.50073479131338, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 114.99164472931383, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 133409442 }, { "Sample": "aih-tih-sc-51d534-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 298010718, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.31, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.63, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.93, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 543691198, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005651, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.515161, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 263602966, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.938703, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.965511, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.049642, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.034489, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 247444769, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 124782302, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13085851, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4457311, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 470.580247, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 218, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.725052, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.615744, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977488, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 163, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 380.575165, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.518088, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.1706, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.61576424378691, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.53, "STAR_mqc-generalstats-star-uniquely_mapped": 256971745, "fastp_mqc-generalstats-fastp-pct_duplication": 35.5294, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976556, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68044220311, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 543691198, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.53912, "fastp_mqc-generalstats-fastp-pct_surviving": 98.41708730470448, "fastp_mqc-generalstats-fastp-pct_adapter": 57.555238267389974, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-51d534-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 142.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.13431741449675, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 266773823, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.9438224935232, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 276217887, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-51d534-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.30859161948936, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 276217887, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-51d534-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.96605234583217, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.07444505658523, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 271845599, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.96605234583217, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.07444505658523, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 271845599 }, { "Sample": "aih-tih-sc-51d534-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.56764861689152, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.2279063601835, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 271845599, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.56764861689152, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.2279063601835, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 271845599 }, { "Sample": "aih-tih-sc-51ee59-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 328157044, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.12, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.56, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.72, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590939540, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005965, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.519199, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 284124190, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.934784, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.963779, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052811, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.036221, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 265594611, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 134145678, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15004818, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5041501, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 520.34431, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 263, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.770818, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.657783, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978171, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 181, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 485.97545800000006, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.522315, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.13770000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.78181265463027, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.16, "STAR_mqc-generalstats-star-uniquely_mapped": 284116244, "fastp_mqc-generalstats-fastp-pct_duplication": 36.5761, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977277, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75021260867, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590939540, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.532711, "fastp_mqc-generalstats-fastp-pct_surviving": 98.48992333333332, "fastp_mqc-generalstats-fastp-pct_adapter": 54.351062500000005, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-51ee59-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 147.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.04334940931521, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289688459, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.76822278499914, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 383004632, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-51ee59-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.07465448767036, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 383004632, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-51ee59-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.20986592294418, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.8294419391872, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295469770, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.20986592294418, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.8294419391872, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295469770 }, { "Sample": "aih-tih-sc-51ee59-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.5457801207299, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.96726934535468, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295469770, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.5457801207299, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.96726934535468, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295469770 }, { "Sample": "aih-tih-sc-522d83-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 294147460, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.31, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.68, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.93, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589022260, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00633, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.531928, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 275704870, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.935507, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.964969, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050969, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.035031, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 257923966, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 130003991, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14052455, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4719566, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 496.539386, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 231, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.740209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.62806, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976724, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 176, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 405.52613, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.535316, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.2371, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.3424051605666, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.26, "STAR_mqc-generalstats-star-uniquely_mapped": 280565736, "fastp_mqc-generalstats-fastp-pct_duplication": 36.6283, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975679, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74260292358, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589022260, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.558255, "fastp_mqc-generalstats-fastp-pct_surviving": 98.17037666666667, "fastp_mqc-generalstats-fastp-pct_adapter": 55.37006383333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-522d83-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 145.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.92995734999896, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288414624, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.72337696730672, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 320492148, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-522d83-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.87730894194854, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 320492148, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-522d83-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.31137175177257, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.12688072603572, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294511130, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.31137175177257, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.12688072603572, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294511130 }, { "Sample": "aih-tih-sc-522d83-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.81830235654125, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.29466914544113, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294511130, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.81830235654125, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.29466914544113, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294511130 }, { "Sample": "aih-tih-sc-5c902f-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 75890679, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 122, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 115, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.19, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.89, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.73, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 441721150, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.010728, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.808237, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 84705738, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.830878, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.893267, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.113176, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.106733, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 70380155, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 35233386, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9586682, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4209892, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 109.439173, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 37, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.536955, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.287547, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975551, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 124, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 175.622327, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.817002, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.4972, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 80.51632700194162, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.22, "STAR_mqc-generalstats-star-uniquely_mapped": 203671358, "fastp_mqc-generalstats-fastp-pct_duplication": 52.2385, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973855, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 51154718207, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 441721150, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.588126, "fastp_mqc-generalstats-fastp-pct_surviving": 97.76340608201095, "fastp_mqc-generalstats-fastp-pct_adapter": 73.68258520582532, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-5c902f-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 122, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.12920198636628, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 214520114, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.43829677255529, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225913339, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-5c902f-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.29293331675083, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225913339, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-5c902f-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.46248533040956, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.75932077963665, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 220860575, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.46248533040956, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.75932077963665, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 220860575 }, { "Sample": "aih-tih-sc-5c902f-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.73886874311343, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 119.06295540523699, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 220860575, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.73886874311343, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 119.06295540523699, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 220860575 }, { "Sample": "aih-tih-sc-5ef3cb-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 101488235, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 129, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.16, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.31, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 0.47, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 550414724, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00924, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.794295, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 113222961, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.830447, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.888825, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.124632, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.111175, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 94025692, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 47395579, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14111209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5928253, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 159.183157, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 41, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.541054, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.360054, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975959, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 139, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 204.089084, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.801703, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 94.13820000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.3197882597419, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.94, "STAR_mqc-generalstats-star-uniquely_mapped": 261276762, "fastp_mqc-generalstats-fastp-pct_duplication": 56.3426, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974439, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 67747764305, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 550414724, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.574284, "fastp_mqc-generalstats-fastp-pct_surviving": 97.97261073782559, "fastp_mqc-generalstats-fastp-pct_adapter": 60.58006364959302, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-5ef3cb-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 139.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.19139839725653, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 264725810, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.19756811046842, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 280902346, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-5ef3cb-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.97355932237227, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 280902346, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-5ef3cb-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.25079567255958, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.18269135547325, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275207362, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 89.25079567255958, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.18269135547325, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275207362 }, { "Sample": "aih-tih-sc-5ef3cb-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.377041564073, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.43197909073378, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275207362, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.377041564073, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.43197909073378, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275207362 }, { "Sample": "aih-tih-sc-60f9b9-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 123069448, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 133.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.71, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.42, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.21, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.72, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 255548270, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00856, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.550785, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 114796136, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.916238, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.947268, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.064708, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.052732, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 105180579, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 52897084, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 7428176, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2944628, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 181.952681, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 78, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.640393, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.451529, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978008, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 137, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 239.66301, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.55554, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.69640000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.97345286851275, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.39, "STAR_mqc-generalstats-star-uniquely_mapped": 120604226, "fastp_mqc-generalstats-fastp-pct_duplication": 36.3658, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976987, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 30956912941, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 255548270, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.529367, "fastp_mqc-generalstats-fastp-pct_surviving": 98.26473719943841, "fastp_mqc-generalstats-fastp-pct_adapter": 66.62040021593086, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-60f9b9-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 133.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.70151525580665, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 124837266, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.98577899547305, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 130030506, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-60f9b9-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 77.88423654942277, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 130030506, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-60f9b9-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.94473735198189, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.8904188394623, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 127774135, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.94473735198189, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.8904188394623, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 127774135 }, { "Sample": "aih-tih-sc-60f9b9-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.08057849541353, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.08231519626409, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 127774135, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.08057849541353, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.08231519626409, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 127774135 }, { "Sample": "aih-tih-sc-6284ec-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 218257664, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 137, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.21, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.64, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 551623362, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00682, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.57822, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 232663742, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.91998, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.949793, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.063849, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.050207, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 214045999, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 107841387, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14855426, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5700567, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 388.600701, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 197, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.74712, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.617398, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978095, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 152, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 323.593769, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.582191, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.5159, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.97375652687855, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.54, "STAR_mqc-generalstats-star-uniquely_mapped": 263520305, "fastp_mqc-generalstats-fastp-pct_duplication": 38.9153, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977098, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68158446250, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 551623362, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.525483, "fastp_mqc-generalstats-fastp-pct_surviving": 98.48007441493405, "fastp_mqc-generalstats-fastp-pct_adapter": 61.81711040177833, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6284ec-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 137, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.68662589747241, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 269431125, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.05262240634418, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 280068514, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6284ec-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.48422682415071, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 280068514, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6284ec-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.04949885241795, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.36734217576522, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275811681, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.04949885241795, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.36734217576522, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275811681 }, { "Sample": "aih-tih-sc-6284ec-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.65360644345786, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.53214497104639, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275811681, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.65360644345786, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.53214497104639, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275811681 }, { "Sample": "aih-tih-sc-62dadb-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 72151744, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 122, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 114, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.76, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.59, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 179706190, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009109, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.587335, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 74158399, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.892508, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.923725, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.085419, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.076275, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 66186973, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 33209646, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 6334511, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2742223, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 104.631308, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 50, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.59706, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.327018, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977225, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 120, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 169.603214, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.592734, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.6397, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.30477450492657, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.35, "STAR_mqc-generalstats-star-uniquely_mapped": 84772285, "fastp_mqc-generalstats-fastp-pct_duplication": 36.3658, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976054, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 20561104793, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 179706190, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548069, "fastp_mqc-generalstats-fastp-pct_surviving": 98.13141933892106, "fastp_mqc-generalstats-fastp-pct_adapter": 74.95566518398495, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-62dadb-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 122, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.73544801100063, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 86919794, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.78227504987339, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 91564043, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-62dadb-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 73.78466303071363, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 91564043, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-62dadb-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 75.67065351214276, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.08912325168097, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 89853095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 75.67065351214276, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.08912325168097, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 89853095 }, { "Sample": "aih-tih-sc-62dadb-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 74.89454471302093, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.34423743556079, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 89853095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 74.89454471302093, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.34423743556079, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 89853095 }, { "Sample": "aih-tih-sc-63b0e7-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 324557435, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 129, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.92, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.47, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.85, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.69, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590242212, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006911, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.514423, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 286608154, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.929786, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.959847, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055981, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.040153, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 266484363, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 134492920, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16044660, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5626217, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 499.847967, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 275, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.782651, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.674241, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977805, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 156, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 365.956465, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.518003, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.565, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.73547754977069, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.75, "STAR_mqc-generalstats-star-uniquely_mapped": 282579231, "fastp_mqc-generalstats-fastp-pct_duplication": 34.929300000000005, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976811, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73131877024, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590242212, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.530373, "fastp_mqc-generalstats-fastp-pct_surviving": 98.373702, "fastp_mqc-generalstats-fastp-pct_adapter": 58.8674565, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-63b0e7-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 141.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.8626222009347, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288813253, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.84874942936946, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 321386524, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-63b0e7-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.08523747554474, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 321386524, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-63b0e7-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.3814586010395, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.75182262633564, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295121106, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.3814586010395, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.75182262633564, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295121106 }, { "Sample": "aih-tih-sc-63b0e7-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.77700550668021, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.92242384385752, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295121106, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.77700550668021, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.92242384385752, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295121106 }, { "Sample": "aih-tih-sc-63c8b4-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 135002604, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 128.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 119, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.88, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.63, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 582663054, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007195, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.714711, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 166227393, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.903468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.941722, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.071313, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.058278, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 150181050, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 75548576, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11854140, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4675284, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 260.943025, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 117, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.692136, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.531586, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 154, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 321.118661, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.71989, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.054, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.16653785637115, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.03, "STAR_mqc-generalstats-star-uniquely_mapped": 279773579, "fastp_mqc-generalstats-fastp-pct_duplication": 45.9087, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976193, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 69911511816, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 582663054, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.547165, "fastp_mqc-generalstats-fastp-pct_surviving": 98.32492572942998, "fastp_mqc-generalstats-fastp-pct_adapter": 66.7778761659385, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-63c8b4-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 128.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.92471344853796, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 285285563, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.57343026853083, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296294683, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-63c8b4-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.44894122383232, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 296294683, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-63c8b4-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.62383431831798, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.80715238553636, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291331527, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.62383431831798, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.80715238553636, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 291331527 }, { "Sample": "aih-tih-sc-63c8b4-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.71124259726545, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.00620631765679, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291331527, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.71124259726545, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.00620631765679, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 291331527 }, { "Sample": "aih-tih-sc-6473fb-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 88516949, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 127.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 119, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.43, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.16, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.96, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.68, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 468278130, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006908, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.789301, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 98665758, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.879803, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.92316, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.08741, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.07684, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 86806437, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 43534479, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8624370, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3623644, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 139.228524, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 58, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.611593, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.374568, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977746, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 128, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 198.548279, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.794792, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.83040000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.3285985978514, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.87, "STAR_mqc-generalstats-star-uniquely_mapped": 222131911, "fastp_mqc-generalstats-fastp-pct_duplication": 53.3506, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976632, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 55647986553, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 468278130, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544309, "fastp_mqc-generalstats-fastp-pct_surviving": 98.23285132713242, "fastp_mqc-generalstats-fastp-pct_adapter": 70.31002456154143, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6473fb-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 127.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.85997992261565, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 229128442, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.91833850948791, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 238351083, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6473fb-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.09617524927432, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 238351083, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6473fb-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.95758428606116, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.56576476035727, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 234139065, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.95758428606116, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.56576476035727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 234139065 }, { "Sample": "aih-tih-sc-6473fb-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.39011332544182, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.78003166195269, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 234139065, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.39011332544182, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.78003166195269, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 234139065 }, { "Sample": "aih-tih-sc-6e7384-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 272749468, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.39, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.21, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.64, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590995196, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005302, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.572001, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 252945335, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.93485, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.963249, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052763, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.036751, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 236465951, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 119340035, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13346066, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4553191, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 456.983987, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 220, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.750991, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.629828, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977741, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 188, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 477.046158, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.57505, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.272, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.13613786371661, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.23, "STAR_mqc-generalstats-star-uniquely_mapped": 284371838, "fastp_mqc-generalstats-fastp-pct_duplication": 39.3702, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976884, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73952207028, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590995196, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.534613, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49919933333334, "fastp_mqc-generalstats-fastp-pct_adapter": 56.48201666666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6e7384-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 143.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.31116969011707, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290507145, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.57145939480091, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 424292606, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6e7384-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.75661319563608, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 424292606, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-6e7384-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.5424539642068, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.01217656598345, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295497598, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.5424539642068, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.01217656598345, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295497598 }, { "Sample": "aih-tih-sc-6e7384-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.71104197473683, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.16195356349394, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295497598, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.71104197473683, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.16195356349394, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295497598 }, { "Sample": "aih-tih-sc-72546a-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 198803310, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 135.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.93, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.12, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.84, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590555810, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007037, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.626038, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 220845169, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.916416, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.948108, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.064765, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.051892, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 202386014, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 101853307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14303148, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5574615, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 363.839749, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 182, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.737575, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.609385, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977011, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 153, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 301.021206, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.630475, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.851, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.55753472743137, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.79, "STAR_mqc-generalstats-star-uniquely_mapped": 282846062, "fastp_mqc-generalstats-fastp-pct_duplication": 41.5838, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975933, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72102706949, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590555810, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553503, "fastp_mqc-generalstats-fastp-pct_surviving": 98.42596833333333, "fastp_mqc-generalstats-fastp-pct_adapter": 63.227814, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-72546a-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 135.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.67243878271216, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288405131, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.97917774511865, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 346315422, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-72546a-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.3787235993724, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 346315422, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-72546a-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.98208298962513, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.00663347635171, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295277905, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.98208298962513, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.00663347635171, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295277905 }, { "Sample": "aih-tih-sc-72546a-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.44892401031198, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.1891831357988, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295277905, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.44892401031198, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.1891831357988, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295277905 }, { "Sample": "aih-tih-sc-758b5a-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 385535446, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.95, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.76, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590313058, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006467, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.484309, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 304419361, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936674, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.964731, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050786, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.035269, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 285141727, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 143822609, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15460147, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5257935, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 563.008004, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 283, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.770642, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.659839, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977611, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 174, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 442.724495, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.487461, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.2239, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.19998192002639, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.04, "STAR_mqc-generalstats-star-uniquely_mapped": 280523868, "fastp_mqc-generalstats-fastp-pct_duplication": 34.2391, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976657, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75271038166, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590313058, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.533278, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38550966666666, "fastp_mqc-generalstats-fastp-pct_adapter": 54.09583, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-758b5a-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 147.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.11775669715915, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289600965, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.04348791766633, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 445757978, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-758b5a-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.33559394353803, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 445757978, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-758b5a-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.49763360617185, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.47974879457942, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295156529, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.49763360617185, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.47974879457942, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295156529 }, { "Sample": "aih-tih-sc-758b5a-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.03125512083462, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.62413054396637, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295156529, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.03125512083462, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.62413054396637, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295156529 }, { "Sample": "aih-tih-sc-75c3a9-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 224205999, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 121, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.92, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.61, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.92, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.92, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590006546, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006271, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.604921, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 233099006, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.923883, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.953379, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.060244, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.046621, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 215356222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 108373025, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14042897, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5299504, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 380.976645, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 185, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.734899, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.608105, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97704, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 152, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 307.659605, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.608739, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.86970000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.93508275285501, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.5, "STAR_mqc-generalstats-star-uniquely_mapped": 281720429, "fastp_mqc-generalstats-fastp-pct_duplication": 39.9764, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976009, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71145631226, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590006546, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.557637, "fastp_mqc-generalstats-fastp-pct_surviving": 98.33442433333333, "fastp_mqc-generalstats-fastp-pct_adapter": 65.30363166666666, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-75c3a9-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 129.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.04970638410511, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289249843, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.98968921335987, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 460316175, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-75c3a9-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.98188007302011, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 460316175, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-75c3a9-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.2696260285106, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.44004938887576, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295003273, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.2696260285106, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.44004938887576, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295003273 }, { "Sample": "aih-tih-sc-75c3a9-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.5029818489663, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.64577840463485, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295003273, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.5029818489663, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.64577840463485, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295003273 }, { "Sample": "aih-tih-sc-762402-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 256938522, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 138.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.47, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.78, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.82, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 423842384, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006415, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.545251, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 192741975, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.938967, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.967684, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.046925, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.032316, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 180978375, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 91195232, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9044508, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3045529, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 345.580667, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 145, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.699104, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.563095, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977249, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 210, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 500.098814, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.548771, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.5667, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.71421440299953, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.42, "STAR_mqc-generalstats-star-uniquely_mapped": 204339383, "fastp_mqc-generalstats-fastp-pct_duplication": 35.1436, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976341, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 52495913774, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 423842384, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.5489, "fastp_mqc-generalstats-fastp-pct_surviving": 98.4317685426954, "fastp_mqc-generalstats-fastp-pct_adapter": 59.36344233280567, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-762402-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 138.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.33177750340325, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 208385875, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.95951246180348, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 215297556, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-762402-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.06886933972186, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 215297556, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-762402-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.96015506405959, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.77035086703363, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 211921192, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.96015506405959, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.77035086703363, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 211921192 }, { "Sample": "aih-tih-sc-762402-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.19564951116922, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.93558387025305, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 211921192, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.19564951116922, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.93558387025305, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 211921192 }, { "Sample": "aih-tih-sc-76a805-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 288251509, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 149.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.16, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.65, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589291276, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007337, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.533998, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 274610676, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.932247, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.964306, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052009, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.035694, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 256005075, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 129163692, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14282115, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4781060, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 497.567753, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.734474, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.619416, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976893, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 170, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 349.866246, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.537945, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.7706, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.50180289141258, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.9, "STAR_mqc-generalstats-star-uniquely_mapped": 276675684, "fastp_mqc-generalstats-fastp-pct_duplication": 38.0179, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975785, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75302892530, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589291276, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.567399, "fastp_mqc-generalstats-fastp-pct_surviving": 98.21521266666666, "fastp_mqc-generalstats-fastp-pct_adapter": 53.01724533333333, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-76a805-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 149.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.92323889756685, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288526552, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.96144611252514, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 516950454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-76a805-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.30182478862831, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 516950454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-76a805-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.47738659284083, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.87180735049606, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294645638, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.47738659284083, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.87180735049606, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294645638 }, { "Sample": "aih-tih-sc-76a805-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.24507406029011, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.02987268048406, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294645638, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.24507406029011, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.02987268048406, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294645638 }, { "Sample": "aih-tih-sc-79f487-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 376449639, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 155.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 141, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.43, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.32, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 547025474, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006518, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.473735, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 287880533, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.940483, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.970637, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.047132, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.029363, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 270746709, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 136809694, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13568423, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4138678, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 556.933044, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 240, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.722197, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.617617, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976818, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 198, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 497.803338, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.476843, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.3767, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.23257242532961, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.23, "STAR_mqc-generalstats-star-uniquely_mapped": 257727360, "fastp_mqc-generalstats-fastp-pct_duplication": 32.894800000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975857, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70690826923, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 547025474, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552659, "fastp_mqc-generalstats-fastp-pct_surviving": 98.36511556418802, "fastp_mqc-generalstats-fastp-pct_adapter": 48.55664780104415, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-79f487-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 155.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.10711264974837, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 268335449, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.20682897594874, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278058675, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-79f487-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.537374851048, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278058675, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-79f487-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.21515033750045, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.35235878978463, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 273512737, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.21515033750045, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.35235878978463, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 273512737 }, { "Sample": "aih-tih-sc-79f487-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.79455523843912, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.4862916822773, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 273512737, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.79455523843912, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.4862916822773, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 273512737 }, { "Sample": "aih-tih-sc-7c610c-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 195969682, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 123.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 116, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.65, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.14, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.73, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.95, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589599870, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007484, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.629023, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 218728232, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.918575, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.950173, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.061252, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.049827, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 200918305, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 100905050, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13397441, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5291419, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 333.009169, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 154, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.704885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.572362, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977522, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 125, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 211.840166, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.633766, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.452, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.26284208735618, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.86, "STAR_mqc-generalstats-star-uniquely_mapped": 273756733, "fastp_mqc-generalstats-fastp-pct_duplication": 38.502700000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976423, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68516871144, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589599870, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.549213, "fastp_mqc-generalstats-fastp-pct_surviving": 98.266645, "fastp_mqc-generalstats-fastp-pct_adapter": 72.67972383333333, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c610c-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 123.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.9560785859739, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288774456, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.56046341965826, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 569831313, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c610c-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.81683228538274, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 569831313, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c610c-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.33077362043038, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.89282190649058, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294799935, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.33077362043038, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.89282190649058, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294799935 }, { "Sample": "aih-tih-sc-7c610c-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.78503480267605, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 119.12684086582313, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294799935, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.78503480267605, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 119.12684086582313, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294799935 }, { "Sample": "aih-tih-sc-7c6c07-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 323982405, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 128, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 3.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.83, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 8.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.14, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590303734, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005808, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.529588, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 277685927, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.932286, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.9596, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.0404, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 258882726, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 130422845, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15374449, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5490861, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 488.396082, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 197, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.709145, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.592809, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976835, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 155, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 336.370668, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.532682, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.1032, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.70422644298739, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.96, "STAR_mqc-generalstats-star-uniquely_mapped": 280282622, "fastp_mqc-generalstats-fastp-pct_duplication": 35.1597, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97588, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73475878273, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590303734, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541773, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38395566666667, "fastp_mqc-generalstats-fastp-pct_adapter": 59.14645683333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c6c07-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 140.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.76257928939341, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288548078, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.2066159805305, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 368700776, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c6c07-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.3958491747661, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 368700776, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c6c07-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.85164970748929, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.45313782819473, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295151867, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.85164970748929, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.45313782819473, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295151867 }, { "Sample": "aih-tih-sc-7c6c07-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.24417812046752, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.62989342025745, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295151867, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.24417812046752, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.62989342025745, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295151867 }, { "Sample": "aih-tih-sc-7c8bae-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 410335455, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 149.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.61, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.58, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.68, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.87, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589070766, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.004834, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.46859, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 313038085, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.941667, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.968551, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.049236, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.03145, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 294777783, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 148828472, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15412639, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4832564, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 588.256571, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 237, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.709866, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.604568, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977969, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 205, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 614.838811, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.470866, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.3911, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.27212981755967, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.99, "STAR_mqc-generalstats-star-uniquely_mapped": 282710000, "fastp_mqc-generalstats-fastp-pct_duplication": 32.5092, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97706, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74503670019, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589070766, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.520152, "fastp_mqc-generalstats-fastp-pct_surviving": 98.178461, "fastp_mqc-generalstats-fastp-pct_adapter": 52.655408, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c8bae-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 149.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.16835113491271, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289140529, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.31457522735327, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 312935809, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c8bae-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.45739956248487, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 312935809, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7c8bae-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.06834904299906, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.356469395733, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294535383, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.06834904299906, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.356469395733, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294535383 }, { "Sample": "aih-tih-sc-7c8bae-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.54797320317358, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.52521280949122, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294535383, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.54797320317358, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.52521280949122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294535383 }, { "Sample": "aih-tih-sc-7d62c4-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 274606814, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 150, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 139, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.8, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.5, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.75, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590210632, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007006, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.560274, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 259530743, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.928676, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960918, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055391, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039082, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 241020003, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 121570928, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14375673, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4944468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 463.076669, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 243, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.765108, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.649593, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975559, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 178, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 409.626859, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.564227, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.77789999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.78295257801139, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.46, "STAR_mqc-generalstats-star-uniquely_mapped": 281719511, "fastp_mqc-generalstats-fastp-pct_duplication": 40.852500000000006, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974511, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75730265850, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590210632, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.549538, "fastp_mqc-generalstats-fastp-pct_surviving": 98.36843866666666, "fastp_mqc-generalstats-fastp-pct_adapter": 53.2911165, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7d62c4-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 150, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.86734475498233, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288811737, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.04015928449245, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 388348420, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7d62c4-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.30713048169122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 388348420, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7d62c4-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.2890249343286, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.58826687825575, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295105316, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.2890249343286, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.58826687825575, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295105316 }, { "Sample": "aih-tih-sc-7d62c4-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.73716132921994, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.73193501875107, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295105316, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.73716132921994, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.73193501875107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295105316 }, { "Sample": "aih-tih-sc-7dd1d5-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 105962616, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 123, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.72, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.18, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.71, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 419284868, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008106, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.674163, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 136618586, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.909702, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.946819, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065419, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.053181, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 124282259, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 62433690, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8937448, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3506772, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 211.950729, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 88, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.677735, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.471797, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976558, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 138, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 239.188558, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.679673, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.2098, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.69790966785251, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.74, "STAR_mqc-generalstats-star-uniquely_mapped": 198615869, "fastp_mqc-generalstats-fastp-pct_duplication": 45.5473, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975335, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 50562940417, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 419284868, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.580076, "fastp_mqc-generalstats-fastp-pct_surviving": 98.06676050635448, "fastp_mqc-generalstats-fastp-pct_adapter": 66.76674842497297, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7dd1d5-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.51979983212749, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 204442882, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.2556785241382, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 213775221, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7dd1d5-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.90836310370557, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 213775221, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7dd1d5-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.28122871166023, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.52814735493865, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 209642434, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.28122871166023, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.52814735493865, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 209642434 }, { "Sample": "aih-tih-sc-7dd1d5-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.39317665578055, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.74617371595676, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 209642434, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.39317665578055, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.74617371595676, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 209642434 }, { "Sample": "aih-tih-sc-7fc50e-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 140261447, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.81, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.36, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.49, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.54, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 361923558, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007642, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.579819, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 152073542, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.907114, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.936953, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.0747, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.063047, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 137947994, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 69373039, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11359836, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4668083, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 237.620967, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 111, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.685172, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.520789, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978151, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 134, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 232.466977, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.584284, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.2253, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.34652506831986, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.03, "STAR_mqc-generalstats-star-uniquely_mapped": 171966579, "fastp_mqc-generalstats-fastp-pct_duplication": 37.8361, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977131, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 43450025082, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 361923558, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.533153, "fastp_mqc-generalstats-fastp-pct_surviving": 98.40992207632453, "fastp_mqc-generalstats-fastp-pct_adapter": 67.13528112476172, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.15948913168012, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 175821540, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.33828975907937, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 183885705, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.20839159096833, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 183885705, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.31878067525982, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.75707071270558, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 180961779, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.31878067525982, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.75707071270558, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 180961779 }, { "Sample": "aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.3086514015588, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.95655287517924, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 180961779, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.3086514015588, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.95655287517924, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 180961779 }, { "Sample": "aih-tih-sc-82e8c1-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 308239719, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.43, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.49, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.37, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.71, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 564641534, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005269, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.520056, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 270996436, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.926679, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.951124, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.062343, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.048876, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 251126753, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 126469509, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16894783, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6499003, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 458.473535, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 219, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.750878, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.628944, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978649, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 141, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 292.314941, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.52281, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.77080000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.72230354773444, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.54, "STAR_mqc-generalstats-star-uniquely_mapped": 269726212, "fastp_mqc-generalstats-fastp-pct_duplication": 34.7168, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977759, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 69063492994, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 564641534, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.507079, "fastp_mqc-generalstats-fastp-pct_surviving": 98.51256068200404, "fastp_mqc-generalstats-fastp-pct_adapter": 62.50527983075984, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-82e8c1-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 136.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.62031214657333, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 275602414, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.16245501052096, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 50, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286583523, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-82e8c1-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.38130543488236, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286583523, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-82e8c1-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.1968137563113, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 50, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.0044000624297, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 282320767, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.1968137563113, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 50, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.0044000624297, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 282320767 }, { "Sample": "aih-tih-sc-82e8c1-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.44758454849784, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.176135494843, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 282320767, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.44758454849784, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.176135494843, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 282320767 }, { "Sample": "aih-tih-sc-884b4c-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 153098839, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 129, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.26, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.36, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.46, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588238020, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008602, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.697683, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 177834243, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.900469, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.943667, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.071078, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.056333, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 160134215, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 80602994, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12640030, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4811700, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 292.665934, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.727951, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.571432, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975854, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 171, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 332.732446, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.703737, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.5724, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.96759886082182, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.02, "STAR_mqc-generalstats-star-uniquely_mapped": 279462039, "fastp_mqc-generalstats-fastp-pct_duplication": 49.810900000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974325, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73325130648, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588238020, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.574502, "fastp_mqc-generalstats-fastp-pct_surviving": 98.03967, "fastp_mqc-generalstats-fastp-pct_adapter": 58.3817955, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-884b4c-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 139.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.32518717508263, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 286251877, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.04035311436728, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 441380003, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-884b4c-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.9947873524668, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 441380003, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-884b4c-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.57261934000906, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.80992656340031, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294119010, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.57261934000906, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.80992656340031, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294119010 }, { "Sample": "aih-tih-sc-884b4c-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.88075849580508, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.0525073132811, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294119010, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.88075849580508, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.0525073132811, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294119010 }, { "Sample": "aih-tih-sc-89cc59-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 49957570, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 120, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 113, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.52, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.69, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.76, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 352633012, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.0143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.83622, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 57754303, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.806228, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.898287, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.106462, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.101713, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 46563130, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 23273901, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 6148642, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2635314, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 67.966689, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 10, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.335976, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.161075, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973263, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 129, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 199.030482, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.848351, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.59609999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 80.36722051215594, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.43, "STAR_mqc-generalstats-star-uniquely_mapped": 162968841, "fastp_mqc-generalstats-fastp-pct_duplication": 54.4617, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.970578, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 40076910092, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 352633012, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.643195, "fastp_mqc-generalstats-fastp-pct_surviving": 97.42544135795809, "fastp_mqc-generalstats-fastp-pct_adapter": 75.85919164290635, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-89cc59-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 120, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.80063930032733, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 170675505, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.76839177283242, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 180975835, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-89cc59-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.24932000082248, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 62, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 180975835, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-89cc59-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.81286102316326, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 64, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.86547608310704, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 176316506, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 90.81286102316326, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 64, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.86547608310704, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 176316506 }, { "Sample": "aih-tih-sc-89cc59-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.0297577011917, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 64, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.3150974475413, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 176316506, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 90.0297577011917, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 64, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.3150974475413, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 176316506 }, { "Sample": "aih-tih-sc-8a623b-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 205177536, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 126.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 118, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.91, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.53, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.85, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.81, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590210554, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006607, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.629301, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 218790270, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.916907, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.946672, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065269, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.053327, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 200610227, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 100841195, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14280239, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5680534, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 338.891646, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 167, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.741149, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.598188, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977397, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 137, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 272.049431, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.633487, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.8071, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.52500486896106, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.78, "STAR_mqc-generalstats-star-uniquely_mapped": 282660093, "fastp_mqc-generalstats-fastp-pct_duplication": 38.2389, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976379, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 69240122077, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590210554, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.538937, "fastp_mqc-generalstats-fastp-pct_surviving": 98.36842566666667, "fastp_mqc-generalstats-fastp-pct_adapter": 70.95262633333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8a623b-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 126.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.73323368934538, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288415930, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.40761811388538, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 314762366, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8a623b-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.44254045766942, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 314762366, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8a623b-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.02397485661524, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.03925649896122, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295105277, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.02397485661524, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.03925649896122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295105277 }, { "Sample": "aih-tih-sc-8a623b-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.18852083492702, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.25360873163919, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295105277, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.18852083492702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.25360873163919, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295105277 }, { "Sample": "aih-tih-sc-8b4971-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 215573148, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 134.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 126, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.75, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.47, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.71, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 572936290, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006579, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.598345, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 230122986, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.917629, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.947227, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065992, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.052773, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 211167518, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 106296298, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15186250, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5922091, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 371.181099, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 182, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.722976, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.599331, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97749, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 140, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 247.733969, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.602307, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.40039999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.60290252446178, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.95, "STAR_mqc-generalstats-star-uniquely_mapped": 271991581, "fastp_mqc-generalstats-fastp-pct_duplication": 38.9701, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976487, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 69905639256, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 572936290, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.536912, "fastp_mqc-generalstats-fastp-pct_surviving": 98.41119022212347, "fastp_mqc-generalstats-fastp-pct_adapter": 64.98304992224824, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8b4971-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 134.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.54559167477417, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 279437047, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.1949103280937, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291093060, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8b4971-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.1097466276966, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 291093060, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8b4971-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.21401247834116, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.85588748445312, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286468145, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.21401247834116, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.85588748445312, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 286468145 }, { "Sample": "aih-tih-sc-8b4971-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.33312283402994, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.03355021201398, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286468145, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.33312283402994, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.03355021201398, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 286468145 }, { "Sample": "aih-tih-sc-8b9375-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 396920371, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.76, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.33, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.65, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589326844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00808, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.475123, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 309324000, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.924996, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.956983, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.059611, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.043017, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 286123328, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 144484221, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 18439036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6494692, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 551.773001, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 278, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.764515, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.653448, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97841, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 165, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 389.11525, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.478993, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.3313, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.99553005024788, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.36, "STAR_mqc-generalstats-star-uniquely_mapped": 280989484, "fastp_mqc-generalstats-fastp-pct_duplication": 32.733200000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977421, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73998163024, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589326844, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.521275, "fastp_mqc-generalstats-fastp-pct_surviving": 98.22114066666666, "fastp_mqc-generalstats-fastp-pct_adapter": 55.289979499999994, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8b9375-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 146.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.49355859988621, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287277856, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.26152151162, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 396406594, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8b9375-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.53173533355462, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 396406594, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8b9375-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.46720872306942, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.3736716700453, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294663422, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.46720872306942, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.3736716700453, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294663422 }, { "Sample": "aih-tih-sc-8b9375-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.0110503685045, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.54428721390468, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294663422, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.0110503685045, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.54428721390468, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294663422 }, { "Sample": "aih-tih-sc-8d3f7c-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 119890071, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 117, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 110, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.69, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.39, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.12, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.57, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 403300124, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006682, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.688212, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 125744079, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.879955, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.909989, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.098615, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.090011, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 110649089, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 55493517, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12400286, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5489130, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 165.228992, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 70, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.626964, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.430352, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97851, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 115, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 168.136684, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.692841, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.238, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.16230471024004, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.08, "STAR_mqc-generalstats-star-uniquely_mapped": 191725357, "fastp_mqc-generalstats-fastp-pct_duplication": 43.521, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97755, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 45067529352, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 403300124, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.522669, "fastp_mqc-generalstats-fastp-pct_surviving": 98.42210837203528, "fastp_mqc-generalstats-fastp-pct_adapter": 79.29879108695908, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8d3f7c-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 117, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.11939637291061, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 195841323, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.39658064939249, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 204882892, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8d3f7c-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.47101693637987, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 204882892, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-8d3f7c-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.39720305597328, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 114.18752079034819, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 201650062, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.39720305597328, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 114.18752079034819, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 201650062 }, { "Sample": "aih-tih-sc-8d3f7c-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.55117034736828, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 114.428826870383, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 201650062, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.55117034736828, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 114.428826870383, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 201650062 }, { "Sample": "aih-tih-sc-910896-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 135717854, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.49, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.25, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.74, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 481567422, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006476, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.667817, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 159968324, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.903741, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.937094, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.076763, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.062906, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 144569962, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 72754934, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12279696, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4883958, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 257.016004, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 117, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.691843, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.530428, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 146, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 262.26793, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.67217, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.5655, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.50393812874361, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.23, "STAR_mqc-generalstats-star-uniquely_mapped": 229295314, "fastp_mqc-generalstats-fastp-pct_duplication": 47.1825, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975215, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 59617040852, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 481567422, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.554247, "fastp_mqc-generalstats-fastp-pct_surviving": 98.2675519659317, "fastp_mqc-generalstats-fastp-pct_adapter": 61.1120139531733, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-910896-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 139.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.52052247421338, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 234813533, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.43706048184812, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 245028706, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-910896-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.24496281615744, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 245028706, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-910896-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.47024945192716, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.84528034373554, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240783711, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.47024945192716, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.84528034373554, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 240783711 }, { "Sample": "aih-tih-sc-910896-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.56307075989722, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.03076544077352, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240783711, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.56307075989722, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.03076544077352, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 240783711 }, { "Sample": "aih-tih-sc-9114fc-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 365225827, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 160.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 146, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.29, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.49, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.78, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590163638, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00592, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.486195, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 303229054, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.934307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.964366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05417, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.035634, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 283309143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 143327534, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16425919, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5296024, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 580.240106, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 305, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.74657, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.652638, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977189, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 204, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 488.033213, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.489091, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.48679999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.36795860079421, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.84, "STAR_mqc-generalstats-star-uniquely_mapped": 282795925, "fastp_mqc-generalstats-fastp-pct_duplication": 36.2989, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976169, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77381085822, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590163638, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550771, "fastp_mqc-generalstats-fastp-pct_surviving": 98.36060633333334, "fastp_mqc-generalstats-fastp-pct_adapter": 46.300485333333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-9114fc-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 160.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.75049407567872, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288443936, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.78212143323265, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 457906929, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-9114fc-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.2529699237493, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 457906929, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-9114fc-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.06919579028627, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.24868535190913, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295081819, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.06919579028627, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.24868535190913, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295081819 }, { "Sample": "aih-tih-sc-9114fc-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.73473443965922, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.37767181786282, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295081819, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.73473443965922, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.37767181786282, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295081819 }, { "Sample": "aih-tih-sc-934f55-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 394328994, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 144.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.86, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.4, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.61, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590255784, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009695, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.480105, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 306871195, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.930466, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.96451, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050887, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.03549, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 285533113, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 144061568, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15615653, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5300904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 552.278016, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 290, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.766265, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.665133, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976752, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 159, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 346.995131, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.484805, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.01570000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.335124371798, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.35, "STAR_mqc-generalstats-star-uniquely_mapped": 278456313, "fastp_mqc-generalstats-fastp-pct_duplication": 31.652200000000004, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975647, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74053001824, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590255784, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.538919, "fastp_mqc-generalstats-fastp-pct_surviving": 98.37596400000001, "fastp_mqc-generalstats-fastp-pct_adapter": 56.497407, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-934f55-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 144.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.96147732454918, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289111643, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.49417679094539, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 369092472, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-934f55-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.78578774309865, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 369092472, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-934f55-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.97674767296877, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.50527551967198, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295127892, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.97674767296877, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.50527551967198, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295127892 }, { "Sample": "aih-tih-sc-934f55-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.50262685759381, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.66466698782912, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295127892, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.50262685759381, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.66466698782912, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295127892 }, { "Sample": "aih-tih-sc-973c73-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 271208766, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 120, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.45, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.46, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591110626, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006348, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.557187, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 261751371, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.924384, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.951205, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.06128, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.048795, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 241958915, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 121743828, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16040093, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6245179, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 421.101586, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 201, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.750644, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.621885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977697, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 139, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 277.495354, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.560747, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.7326, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.15085978258323, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.66, "STAR_mqc-generalstats-star-uniquely_mapped": 282723777, "fastp_mqc-generalstats-fastp-pct_duplication": 35.621199999999995, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976778, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70458698575, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591110626, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541515, "fastp_mqc-generalstats-fastp-pct_surviving": 98.51843766666667, "fastp_mqc-generalstats-fastp-pct_adapter": 67.534584, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-973c73-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 129.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.88839018434427, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289314338, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.93277309424043, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 448322143, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-973c73-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.47390445543257, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 448322143, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-973c73-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.42214224331809, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.92790083594268, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295555313, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.42214224331809, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.92790083594268, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295555313 }, { "Sample": "aih-tih-sc-973c73-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.90475799573719, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.12250152985746, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295555313, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.90475799573719, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.12250152985746, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295555313 }, { "Sample": "aih-tih-sc-976eb1-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 38452230, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 116, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 110, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.25, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.74, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.4, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 144234166, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.031769, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.756366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 35140308, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.720864, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.838953, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.148739, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.161047, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 25331373, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 12670558, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 5226720, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2432266, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 36.141312, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 14, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.337563, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.084703, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977431, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 112, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 141.19779, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.781184, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.1043, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 81.68397434104935, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 91.78, "STAR_mqc-generalstats-star-uniquely_mapped": 66189990, "fastp_mqc-generalstats-fastp-pct_duplication": 45.4878, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976202, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 15975182789, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 144234166, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544446, "fastp_mqc-generalstats-fastp-pct_surviving": 97.46419583224782, "fastp_mqc-generalstats-fastp-pct_adapter": 80.17383128884273, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-976eb1-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 116, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 94.00745035680382, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 67795431, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.60921023910348, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 73993411, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-976eb1-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.2108474320315, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 73993411, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-976eb1-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.44861090750632, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 113.31083698989877, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 72117083, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.44861090750632, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 113.31083698989877, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 72117083 }, { "Sample": "aih-tih-sc-976eb1-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.30002283844914, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 113.59703159374874, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 72117083, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.30002283844914, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 113.59703159374874, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 72117083 }, { "Sample": "aih-tih-sc-97c26d-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 93947849, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 106.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 101, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.52, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.42, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.63, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 220882254, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007283, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.706393, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 64852454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.851281, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.882072, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.123912, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.117928, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 55207673, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 27651747, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8036016, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3696897, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 75.660372, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 27, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.484894, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.221175, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978186, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 104, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 141.47377, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.711576, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.7318, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.18607744544991, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.11, "STAR_mqc-generalstats-star-uniquely_mapped": 105039641, "fastp_mqc-generalstats-fastp-pct_duplication": 38.8521, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977231, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 23121285973, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 220882254, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.514408, "fastp_mqc-generalstats-fastp-pct_surviving": 98.31004933780659, "fastp_mqc-generalstats-fastp-pct_adapter": 86.11294772954128, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-97c26d-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 106.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.39337074131814, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 106457925, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.31983045426166, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 112339611, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-97c26d-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.57682186480872, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 112339611, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-97c26d-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.25119657436187, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 106.97487348168767, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 107, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 110441127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.25119657436187, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 106.97487348168767, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 110441127 }, { "Sample": "aih-tih-sc-97c26d-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.43915172798505, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 107.24902407958947, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 107, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 110441127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.43915172798505, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 107.24902407958947, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 110441127 }, { "Sample": "aih-tih-sc-97ecde-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 99127221, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 124.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 115, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.64, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.3, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 22.62, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 499479968, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00909, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.791426, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 104178614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.823533, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.874331, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.132884, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.125669, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 85794500, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 43046886, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13843694, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6187176, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 134.903359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 62, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.627737, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.389886, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977409, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 123, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 185.579268, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.798686, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.8438, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.66332362327977, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.58, "STAR_mqc-generalstats-star-uniquely_mapped": 236209972, "fastp_mqc-generalstats-fastp-pct_duplication": 50.54769999999999, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976318, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 57721531856, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 499479968, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548012, "fastp_mqc-generalstats-fastp-pct_surviving": 98.20899175222951, "fastp_mqc-generalstats-fastp-pct_adapter": 72.24422342609188, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-97ecde-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 124.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.91790081959803, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 242042750, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.79709298861165, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 254294418, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-97ecde-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.70669802793613, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 254294418, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-97ecde-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.82368416456579, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.24304399330785, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 249739984, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.82368416456579, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.24304399330785, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 249739984 }, { "Sample": "aih-tih-sc-97ecde-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.95982653241839, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.4795234751036, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 249739984, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.95982653241839, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.4795234751036, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 249739984 }, { "Sample": "aih-tih-sc-a03f86-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 285557296, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 151.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.81, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.76, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.77, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 318215084, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005969, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.433383, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 180306209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936707, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.963725, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05276, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.036275, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 168894009, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 85317532, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9512908, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3211361, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 337.572043, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 163, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.725262, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.588292, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977763, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 197, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 492.761679, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.435985, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.749, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.21315291294006, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.99, "STAR_mqc-generalstats-star-uniquely_mapped": 152724802, "fastp_mqc-generalstats-fastp-pct_duplication": 30.121399999999998, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976871, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 40645910422, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 318215084, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537706, "fastp_mqc-generalstats-fastp-pct_surviving": 98.50292007072484, "fastp_mqc-generalstats-fastp-pct_adapter": 51.962011484351244, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a03f86-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 151.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.88647793955613, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 155744769, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.21910177938477, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 161525711, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a03f86-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 78.84465391934184, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 161525711, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a03f86-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.25876427952078, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.67952335659865, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 159107542, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.25876427952078, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.67952335659865, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 159107542 }, { "Sample": "aih-tih-sc-a03f86-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.87756581692446, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.8196256780838, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 159107542, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 79.87756581692446, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.8196256780838, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 159107542 }, { "Sample": "aih-tih-sc-a3a521-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 307005055, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.9, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.64, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.91, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589939694, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.521203, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 282461256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.930654, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.9575, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056508, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.0425, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 262873826, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 132457213, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15961459, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5879252, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 482.461373, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.757322, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.647157, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978739, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 152, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 362.47669, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.524426, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.9935, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.78382259556813, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.73, "STAR_mqc-generalstats-star-uniquely_mapped": 282372762, "fastp_mqc-generalstats-fastp-pct_duplication": 34.9651, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977844, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72354140751, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589939694, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.522333, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49634139011918, "fastp_mqc-generalstats-fastp-pct_adapter": 61.758439696130495, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a3a521-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 136, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.83108915536035, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288572214, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.47849045901057, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 299472897, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a3a521-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.75251142559509, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 299472897, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a3a521-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.47197593241809, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.33439508818675, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294969847, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.47197593241809, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.33439508818675, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294969847 }, { "Sample": "aih-tih-sc-a3a521-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.92851189238175, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.50545011809292, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294969847, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.92851189238175, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.50545011809292, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294969847 }, { "Sample": "aih-tih-sc-a49d10-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 259867082, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 135.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.91, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.11, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.79, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.54, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590241030, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009026, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.567423, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 255325010, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.919111, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.952455, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.060024, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.047545, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 234671970, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 118039268, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15325612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5892289, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 418.47854, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 181, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.708261, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.585904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976738, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 141, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 289.17507, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.572591, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.2322, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.33527972927934, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.61, "STAR_mqc-generalstats-star-uniquely_mapped": 279220918, "fastp_mqc-generalstats-fastp-pct_duplication": 38.2754, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975756, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71764265201, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590241030, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.531714, "fastp_mqc-generalstats-fastp-pct_surviving": 98.37350500000001, "fastp_mqc-generalstats-fastp-pct_adapter": 64.97638716666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a49d10-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 135.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.01459007348235, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289261163, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.21586152360501, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 476734844, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a49d10-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.2289749291481, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 476734844, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a49d10-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.23805798617497, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.5047596775846, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295120515, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.23805798617497, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.5047596775846, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295120515 }, { "Sample": "aih-tih-sc-a49d10-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.37387142514903, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.69413557373333, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295120515, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.37387142514903, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.69413557373333, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295120515 }, { "Sample": "aih-tih-sc-a70f1e-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 97727921, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 114.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 108, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.98, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 1.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.26, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 491971576, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007159, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.791308, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 102670343, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.841275, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.882384, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.124421, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.117616, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 86373983, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 43263196, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12774380, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5766695, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 124.653504, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 40, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.540421, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.347551, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978588, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 111, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 166.776186, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.797014, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.49759999999999, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.90458503569806, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.9, "STAR_mqc-generalstats-star-uniquely_mapped": 233440080, "fastp_mqc-generalstats-fastp-pct_duplication": 45.5758, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977588, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 53698229991, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 491971576, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.516119, "fastp_mqc-generalstats-fastp-pct_surviving": 98.25387778835302, "fastp_mqc-generalstats-fastp-pct_adapter": 81.80924762447441, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a70f1e-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 114.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.06813224510353, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 238773810, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.12978288266169, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 250357333, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a70f1e-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.31200387420598, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 250357333, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-a70f1e-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.14358781659202, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 111.51206251801831, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 245985788, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.14358781659202, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 111.51206251801831, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 245985788 }, { "Sample": "aih-tih-sc-a70f1e-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.50063172517896, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 111.7815254595115, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 245985788, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.50063172517896, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 111.7815254595115, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 245985788 }, { "Sample": "aih-tih-sc-ac6a71-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 340501533, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.59, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.9, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591045986, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005436, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.521527, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 282799339, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.937375, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.965698, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.051264, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.034302, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 265088987, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 133905310, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14497336, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4756332, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 524.790088, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.757984, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.644487, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977819, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 203, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 525.318075, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.524378, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.0955, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.45836994798961, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.39, "STAR_mqc-generalstats-star-uniquely_mapped": 284844679, "fastp_mqc-generalstats-fastp-pct_duplication": 37.0439, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976945, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74989740600, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591045986, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537129, "fastp_mqc-generalstats-fastp-pct_surviving": 98.50766433333334, "fastp_mqc-generalstats-fastp-pct_adapter": 53.322818500000004, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ac6a71-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 148.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.18488235194613, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290158903, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.91452594852325, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 334414061, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ac6a71-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.0538566919673, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 334414061, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ac6a71-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.25812080589623, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.79274141961605, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295522993, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.25812080589623, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.79274141961605, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295522993 }, { "Sample": "aih-tih-sc-ac6a71-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.48323546079966, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.93689682887043, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295522993, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.48323546079966, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.93689682887043, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295522993 }, { "Sample": "aih-tih-sc-b157e9-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 194468406, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 134.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.79, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.43, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.35, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.62, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590007404, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.011302, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.616333, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 226366623, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.915441, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.957309, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055102, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.042691, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 207225279, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 104231601, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12473288, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4648217, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 368.396848, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 177, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.73293, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.599945, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977681, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 141, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 269.396673, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.623378, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.2945, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.55003793633011, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.13, "STAR_mqc-generalstats-star-uniquely_mapped": 277690784, "fastp_mqc-generalstats-fastp-pct_duplication": 40.6235, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.9766, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71851659266, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590007404, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.549206, "fastp_mqc-generalstats-fastp-pct_surviving": 98.33456733333334, "fastp_mqc-generalstats-fastp-pct_adapter": 64.71451, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b157e9-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 134.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.9727247626201, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289023165, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.8244394301991, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 393803875, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b157e9-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.13919105321388, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 393803875, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b157e9-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.82243475381175, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.59828690217589, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295003702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.82243475381175, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.59828690217589, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295003702 }, { "Sample": "aih-tih-sc-b157e9-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.27138570785219, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.78713406789723, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295003702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.27138570785219, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.78713406789723, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295003702 }, { "Sample": "aih-tih-sc-b845f7-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 243187711, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 141.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.84, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.34, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.53, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.52, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 1.09, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 562449410, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007673, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.565574, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 244342608, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.916623, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.949556, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065714, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.050444, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 223970026, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 112981202, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16056713, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6001961, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 411.157298, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 200, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.75239, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.622264, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976687, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 151, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 277.955289, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.569947, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.7577, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.71848371086743, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.12, "STAR_mqc-generalstats-star-uniquely_mapped": 267503341, "fastp_mqc-generalstats-fastp-pct_duplication": 39.4785, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975584, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70351796430, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 562449410, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.558522, "fastp_mqc-generalstats-fastp-pct_surviving": 98.29822996658476, "fastp_mqc-generalstats-fastp-pct_adapter": 58.75279116932725, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b845f7-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 141.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.37327486929003, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 273837705, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.29811784897801, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286093356, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b845f7-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.35122168703316, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286093356, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b845f7-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.28184582450176, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.12212533745924, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281224705, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.28184582450176, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.12212533745924, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 281224705 }, { "Sample": "aih-tih-sc-b845f7-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.56522484076461, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.28852581425946, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281224705, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.56522484076461, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.28852581425946, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 281224705 }, { "Sample": "aih-tih-sc-b93682-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 404108442, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 171, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 154, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 2.62, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.6, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 7.75, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590831830, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005039, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.505752, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 292017403, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.93819, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.970232, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.051616, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.029768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 273967680, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 138979783, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15072780, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4264100, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 597.170069, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 227, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.712022, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.606775, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977584, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 304, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 874.881696, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.508313, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.1364, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.62156561559743, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.33, "STAR_mqc-generalstats-star-uniquely_mapped": 284561041, "fastp_mqc-generalstats-fastp-pct_duplication": 38.296400000000006, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976711, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78859255269, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590831830, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537872, "fastp_mqc-generalstats-fastp-pct_surviving": 98.47197166666668, "fastp_mqc-generalstats-fastp-pct_adapter": 40.639708166666665, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b93682-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 171, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.94561135949633, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289346924, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.75508645813882, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 440272067, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b93682-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.04076052878108, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 440272067, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-b93682-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.72646508225576, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.59759446947874, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295415915, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.72646508225576, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.59759446947874, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295415915 }, { "Sample": "aih-tih-sc-b93682-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.1626416352697, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.69990556534506, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295415915, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.1626416352697, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.69990556534506, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295415915 }, { "Sample": "aih-tih-sc-be4b28-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 174667886, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 124.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 116, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.28, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.53, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.74, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 452472898, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005816, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.595257, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 183135220, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.927318, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.953005, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058312, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.046995, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 169824525, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 85300319, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10678985, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4206353, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 279.964232, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.670119, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.53206, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978462, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 126, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 250.072485, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.598739, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.3612, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.37557287189988, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.6, "STAR_mqc-generalstats-star-uniquely_mapped": 216279586, "fastp_mqc-generalstats-fastp-pct_duplication": 36.1721, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977505, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 52447740586, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 452472898, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.520845, "fastp_mqc-generalstats-fastp-pct_surviving": 98.34519698127497, "fastp_mqc-generalstats-fastp-pct_adapter": 73.28062226535344, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-be4b28-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 124.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.03476406226656, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 221790369, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.95468661618568, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230043211, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-be4b28-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.91377867094647, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230043211, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-be4b28-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.94450087332947, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.46355811127499, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 226236449, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.94450087332947, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.46355811127499, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 226236449 }, { "Sample": "aih-tih-sc-be4b28-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.12293300952078, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.68746029513574, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 226236449, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.12293300952078, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.68746029513574, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 226236449 }, { "Sample": "aih-tih-sc-c04072-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 202521146, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.64, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.25, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.83, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590997126, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00692, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.628587, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 219503936, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.925686, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960717, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055684, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039282, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 203191637, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 102597970, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12222784, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4195091, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 399.770073, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 190, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.738904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.60984, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977433, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 221, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 543.16523, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.632967, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.9465, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.69736251404282, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.89, "STAR_mqc-generalstats-star-uniquely_mapped": 283341318, "fastp_mqc-generalstats-fastp-pct_duplication": 46.8617, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976479, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76803264791, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590997126, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548824, "fastp_mqc-generalstats-fastp-pct_surviving": 98.499521, "fastp_mqc-generalstats-fastp-pct_adapter": 51.696867999999995, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c04072-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 148.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.96682496895932, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289490560, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.32728191782132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 314948395, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c04072-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.49509084635228, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 314948395, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c04072-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.03219974030743, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.02069343734846, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295498563, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.03219974030743, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.02069343734846, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295498563 }, { "Sample": "aih-tih-sc-c04072-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.33545524321171, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.1369853971168, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295498563, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.33545524321171, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.1369853971168, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295498563 }, { "Sample": "aih-tih-sc-c55577-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 67812585, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 133.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.11, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.43, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.12, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.6, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.74, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 388340914, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.011074, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.790218, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 81466803, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.858542, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.922611, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.088672, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.077389, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 69942643, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 35096053, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 7223838, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2943870, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 118.23786, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 36, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.528443, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.299593, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975368, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 131, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 188.129694, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.799067, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.102, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 72.49120224653012, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 88.73, "STAR_mqc-generalstats-star-uniquely_mapped": 172289621, "fastp_mqc-generalstats-fastp-pct_duplication": 55.7446, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973538, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 46769879116, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 388340914, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.58751, "fastp_mqc-generalstats-fastp-pct_surviving": 97.78369892819961, "fastp_mqc-generalstats-fastp-pct_adapter": 65.82361104102017, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c55577-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 133.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.52138812754609, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 189357725, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.4139480910413, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 198571397, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c55577-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.0440701234691, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 198571397, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c55577-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.47890965475581, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.55571526002022, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 194170457, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 89.47890965475581, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.55571526002022, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 194170457 }, { "Sample": "aih-tih-sc-c55577-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.59444979500559, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.85103607187781, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 194170457, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.59444979500559, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.85103607187781, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 194170457 }, { "Sample": "aih-tih-sc-c5cb90-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 118989974, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 121.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 114, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 2.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.8, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.16, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 6.52, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.18, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 587142262, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00832, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.760535, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 140599935, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.879715, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.925114, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.08554, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.074886, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 123687857, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 61991068, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12026879, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5018067, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 192.713633, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 71, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.616096, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.438089, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976625, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 123, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 194.204819, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.766916, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.282, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 79.27984032897909, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 91.68, "STAR_mqc-generalstats-star-uniquely_mapped": 269135743, "fastp_mqc-generalstats-fastp-pct_duplication": 47.3622, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975227, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 67689671562, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 587142262, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.560651, "fastp_mqc-generalstats-fastp-pct_surviving": 97.85704366666667, "fastp_mqc-generalstats-fastp-pct_adapter": 74.76502733333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 121.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.6527657959665, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 286680329, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 91.08885757014286, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 513346796, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.92137721331711, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 513346796, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.9134121383854, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.06962118833135, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293571131, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.9134121383854, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.06962118833135, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293571131 }, { "Sample": "aih-tih-sc-c5cb90-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.33924300074096, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 118.35100892464797, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 293571131, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.33924300074096, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 118.35100892464797, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 293571131 }, { "Sample": "aih-tih-sc-c63171-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 222123216, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.13, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.58, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.87, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590163676, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007376, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.586871, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 243813832, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.920312, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.950467, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.061834, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.049533, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 224384664, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 112831576, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15075965, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5880100, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 389.65955, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 191, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.709612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.598668, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976854, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 135, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 246.917413, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.591232, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.0313, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.26937335609541, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.74, "STAR_mqc-generalstats-star-uniquely_mapped": 276604189, "fastp_mqc-generalstats-fastp-pct_duplication": 36.4341, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975718, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70388607359, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590163676, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542771, "fastp_mqc-generalstats-fastp-pct_surviving": 98.36061266666667, "fastp_mqc-generalstats-fastp-pct_adapter": 68.37863566666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c63171-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 129.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.71797781739451, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288348005, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.8443049535044, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 335665017, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c63171-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.10330709152336, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 335665017, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c63171-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.97022684914509, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.12562929067833, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295081838, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.97022684914509, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.12562929067833, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295081838 }, { "Sample": "aih-tih-sc-c63171-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.46151669351819, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.33897564715589, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295081838, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.46151669351819, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.33897564715589, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295081838 }, { "Sample": "aih-tih-sc-c7b68f-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 241786799, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.17, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.89, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.13, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.41, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.22, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590092498, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00544, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.580457, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 247569352, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.934159, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960262, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052876, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039738, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 231269015, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 116337297, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13090411, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4814267, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 407.060433, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 180, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.709226, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.591639, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977663, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 144, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 340.886516, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.583631, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.5664, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.35937589853363, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.96, "STAR_mqc-generalstats-star-uniquely_mapped": 283120140, "fastp_mqc-generalstats-fastp-pct_duplication": 37.857800000000005, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976723, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70531864768, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590092498, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.529424, "fastp_mqc-generalstats-fastp-pct_surviving": 98.34874966666666, "fastp_mqc-generalstats-fastp-pct_adapter": 67.00867416666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c7b68f-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.31976206550588, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290088770, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.36321711640142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 322872933, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c7b68f-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.83228442479528, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 322872933, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c7b68f-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.81691875830158, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.2693102598976, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295046249, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.81691875830158, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.2693102598976, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295046249 }, { "Sample": "aih-tih-sc-c7b68f-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.58417711402147, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.46968045338546, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295046249, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.58417711402147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.46968045338546, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295046249 }, { "Sample": "aih-tih-sc-c9a01b-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 203431774, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.76, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.52, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.86, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590387040, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006552, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.641899, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 211418440, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.918999, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.953859, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.062704, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.046141, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 194293279, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 98076013, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13256807, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4744223, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 365.528417, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 165, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.730686, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.58858, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974933, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 188, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 437.144904, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.646132, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.92450000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.65750542825913, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.24, "STAR_mqc-generalstats-star-uniquely_mapped": 284107436, "fastp_mqc-generalstats-fastp-pct_duplication": 44.8779, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973958, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73785135100, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590387040, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.554746, "fastp_mqc-generalstats-fastp-pct_surviving": 98.39784, "fastp_mqc-generalstats-fastp-pct_adapter": 57.46867933333333, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c9a01b-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 142.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.02768197621681, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289371365, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.22645058584034, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 471300765, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c9a01b-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.22625138327358, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 471300765, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-c9a01b-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.62848343583498, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.23192990144227, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295193520, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.62848343583498, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.23192990144227, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295193520 }, { "Sample": "aih-tih-sc-c9a01b-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.69361978567049, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.39455576125113, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295193520, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.69361978567049, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.39455576125113, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295193520 }, { "Sample": "aih-tih-sc-ce6733-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 271078159, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.65, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.37, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590004620, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006814, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.552351, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 264114698, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.932102, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962832, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052676, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037168, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 246181763, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 124116390, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13912472, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4791281, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 471.052989, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 205, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.725761, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.60802, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976089, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 168, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 356.372311, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.556141, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.1505, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.78412036799953, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.25, "STAR_mqc-generalstats-star-uniquely_mapped": 278027656, "fastp_mqc-generalstats-fastp-pct_duplication": 38.1166, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974973, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74264270959, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590004620, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.564974, "fastp_mqc-generalstats-fastp-pct_surviving": 98.33410333333333, "fastp_mqc-generalstats-fastp-pct_adapter": 56.306738833333334, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ce6733-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 145, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.97931650094537, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289041247, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.91540751831748, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 523886041, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ce6733-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.3629031233599, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 523886041, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ce6733-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.36107663147978, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.01202353974787, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295002310, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.36107663147978, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.01202353974787, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295002310 }, { "Sample": "aih-tih-sc-ce6733-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.1294483659256, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.18030717793363, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295002310, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.1294483659256, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.18030717793363, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295002310 }, { "Sample": "aih-tih-sc-d113b5-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 122273024, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 125, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 116, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.97, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.53, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.85, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589843474, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007134, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.720636, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 164781056, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.907275, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.94453, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.067189, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.05547, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 149501803, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 75077443, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11071434, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4409135, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 245.989565, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.701319, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.538677, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976807, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 143, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 286.127912, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.725814, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.2797, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.04155636483411, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.5, "STAR_mqc-generalstats-star-uniquely_mapped": 281658999, "fastp_mqc-generalstats-fastp-pct_duplication": 45.9071, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975773, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68808674481, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589843474, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.562492, "fastp_mqc-generalstats-fastp-pct_surviving": 98.30724566666666, "fastp_mqc-generalstats-fastp-pct_adapter": 71.28339299999999, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d113b5-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 125, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.99018951254854, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288994369, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.61300046538375, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313636686, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d113b5-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.99861728766899, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 313636686, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d113b5-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.29498284427555, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 119.43397573302641, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294921737, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.29498284427555, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 119.43397573302641, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294921737 }, { "Sample": "aih-tih-sc-d113b5-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.88897974985301, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 119.66003935477974, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294921737, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.88897974985301, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 119.66003935477974, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294921737 }, { "Sample": "aih-tih-sc-d12f1f-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 460889132, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.94, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.59, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.84, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.79, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590234764, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005034, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.455838, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 321183073, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.940733, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966102, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050016, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033898, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 302147502, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 152500731, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16064425, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5350841, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 592.889966, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 267, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.728305, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.626464, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977971, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 166, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 414.802795, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.458145, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.1212, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.5250152141634, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.91, "STAR_mqc-generalstats-star-uniquely_mapped": 283060438, "fastp_mqc-generalstats-fastp-pct_duplication": 31.2054, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977058, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74344841053, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590234764, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.523389, "fastp_mqc-generalstats-fastp-pct_surviving": 98.37246066666665, "fastp_mqc-generalstats-fastp-pct_adapter": 54.84303416666667, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d12f1f-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 145.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.0463604139725, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289351852, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.82091548238553, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 493069917, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d12f1f-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.88589276152219, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 493069917, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d12f1f-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.99529413361316, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.83467137493108, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295117382, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.99529413361316, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 51, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.83467137493108, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295117382 }, { "Sample": "aih-tih-sc-d12f1f-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.15259021916454, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.9854703068625, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295117382, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.15259021916454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.9854703068625, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295117382 }, { "Sample": "aih-tih-sc-d2f1f4-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 145417756, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 133.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.63, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.36, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.57, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 439882292, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008517, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.650635, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 153679252, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.895356, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.932147, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.080265, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.067853, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 137597666, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 69240644, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12335037, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5040165, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 236.916131, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 117, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.702419, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.532798, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97735, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 137, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 214.541561, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.656225, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.88550000000001, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.76608397823162, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.18, "STAR_mqc-generalstats-star-uniquely_mapped": 209338915, "fastp_mqc-generalstats-fastp-pct_duplication": 44.5641, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976111, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 53633683044, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 439882292, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553862, "fastp_mqc-generalstats-fastp-pct_surviving": 98.3118388793485, "fastp_mqc-generalstats-fastp-pct_adapter": 64.79920709416392, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d2f1f4-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 133.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.19512828218146, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 213772079, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.32941098206327, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 223717864, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d2f1f4-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.93782481076877, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 223717864, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d2f1f4-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.30872918046575, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.80864308581897, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 219941146, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.30872918046575, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.80864308581897, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 219941146 }, { "Sample": "aih-tih-sc-d2f1f4-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.11498230699164, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.00157265253132, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 219941146, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.11498230699164, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.00157265253132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 219941146 }, { "Sample": "aih-tih-sc-d5506e-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 114071772, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.78, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.31, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.71, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.54, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 512515456, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00709, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.756451, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 124822796, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.888698, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.930717, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.082193, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.069283, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 110929708, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 55749605, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10259596, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4150021, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 191.726401, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 85, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.664906, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.464712, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974412, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 155, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 306.138809, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.761852, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.9638, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.28472238088612, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.68, "STAR_mqc-generalstats-star-uniquely_mapped": 245180931, "fastp_mqc-generalstats-fastp-pct_duplication": 51.7918, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973363, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 61837728158, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 512515456, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.560264, "fastp_mqc-generalstats-fastp-pct_surviving": 98.22404363991973, "fastp_mqc-generalstats-fastp-pct_adapter": 65.084404068014, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d5506e-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.87463112136857, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 250811306, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.02981900730963, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260891039, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d5506e-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.47203664462434, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260891039, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-d5506e-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.09167758518936, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.84918768576611, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 256257728, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 89.09167758518936, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.84918768576611, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 256257728 }, { "Sample": "aih-tih-sc-d5506e-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.82040892716175, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.0542247100544, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 256257728, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.82040892716175, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.0542247100544, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 256257728 }, { "Sample": "aih-tih-sc-e9e54b-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 135557710, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.17, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.8, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 580189612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.71368, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 166119716, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.88574, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.926831, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.084686, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.073169, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 147138893, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 73916766, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14068060, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5835369, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 240.514705, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 107, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.686375, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.514416, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976151, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 130, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 204.173937, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.719775, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.3518, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.76187391156938, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.51, "STAR_mqc-generalstats-star-uniquely_mapped": 274168158, "fastp_mqc-generalstats-fastp-pct_duplication": 48.733900000000006, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97485, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 69111372188, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 580189612, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.565607, "fastp_mqc-generalstats-fastp-pct_surviving": 98.12878950589162, "fastp_mqc-generalstats-fastp-pct_adapter": 69.20221898704501, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-e9e54b-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 129, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.24855328847218, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 282113002, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.40027607039535, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295626602, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-e9e54b-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.61493489751714, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295626602, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-e9e54b-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.42700611473464, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.0729598343791, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 290094806, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.42700611473464, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.0729598343791, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 290094806 }, { "Sample": "aih-tih-sc-e9e54b-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.02351527798773, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.29844179630021, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 290094806, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.02351527798773, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.29844179630021, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 290094806 }, { "Sample": "aih-tih-sc-ea2fad-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 97867574, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 111.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 106, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.16, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.58, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.88, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 367781122, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005267, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.722847, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 101931556, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.895599, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.92375, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.085396, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.07625, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 91289842, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 45753039, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8704569, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3776658, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 133.642612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.59446, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.366487, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.978278, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 114, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 192.677946, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.726675, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.1595, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.40696899536036, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.96, "STAR_mqc-generalstats-star-uniquely_mapped": 176464777, "fastp_mqc-generalstats-fastp-pct_duplication": 44.4259, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.977405, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 40149553405, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 367781122, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.524844, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38600943122445, "fastp_mqc-generalstats-fastp-pct_adapter": 82.0494345146399, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ea2fad-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 111.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.89589852847314, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 180021317, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.2441761166604, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 186907226, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ea2fad-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.29548761958512, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 186907226, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ea2fad-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.19699550721627, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 111.55828879112507, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 183890561, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.19699550721627, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 111.55828879112507, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 183890561 }, { "Sample": "aih-tih-sc-ea2fad-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.39164430538493, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 111.81375484519839, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 112, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 183890561, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.39164430538493, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 111.81375484519839, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 112, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 183890561 }, { "Sample": "aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 308367226, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 126, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.19, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.97, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589560698, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006799, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.531934, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 275953427, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.930918, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.959768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.054556, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.040233, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 256889959, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 129361502, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15054801, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5422713, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 470.761596, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 215, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.72039, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.609202, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977575, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 147, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 308.397042, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.535575, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 97.0819, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.3568237153042, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.6, "STAR_mqc-generalstats-star-uniquely_mapped": 275927874, "fastp_mqc-generalstats-fastp-pct_duplication": 34.9148, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976551, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72152073774, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589560698, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.531557, "fastp_mqc-generalstats-fastp-pct_surviving": 98.26011633333334, "fastp_mqc-generalstats-fastp-pct_adapter": 62.899993333333335, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 136.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.86270352777146, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288480019, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.23418032732818, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 448485930, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.50383761123967, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 448485930, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.55636378358976, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.22084920932093, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294780349, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.55636378358976, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.22084920932093, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294780349 }, { "Sample": "aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.07420715074177, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.41046541063699, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294780349, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.07420715074177, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.41046541063699, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294780349 }, { "Sample": "aih-tih-sc-f14fdc-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 384743452, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 142.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.82, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.43, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.78, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.7, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590640504, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006779, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.503711, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 293128143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.929961, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.958983, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056379, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.041017, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 272597632, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 137523349, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16526364, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5882019, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 524.620362, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 264, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.772301, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.658552, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97628, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 174, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 400.556696, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.50715, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.7778, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.33052455589493, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.01, "STAR_mqc-generalstats-star-uniquely_mapped": 283543478, "fastp_mqc-generalstats-fastp-pct_duplication": 34.2003, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97533, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73879666232, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590640504, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.535385, "fastp_mqc-generalstats-fastp-pct_surviving": 98.440084, "fastp_mqc-generalstats-fastp-pct_adapter": 57.147284166666665, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f14fdc-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 142.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.8996818003528, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289117587, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.90274998402504, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 438789322, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f14fdc-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.45696971422079, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 438789322, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f14fdc-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.55740495165372, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.1614195696948, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295320252, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.55740495165372, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.1614195696948, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295320252 }, { "Sample": "aih-tih-sc-f14fdc-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.1179892222487, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.32275773284928, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295320252, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.1179892222487, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.32275773284928, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295320252 }, { "Sample": "aih-tih-sc-f39d87-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 179899818, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 120.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 112, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.85, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.56, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.16, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.33, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.86, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 459945424, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007587, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.584958, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 190896714, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.917569, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.946653, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.064151, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.053347, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 175160881, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 87969713, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12246206, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4957400, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 281.523444, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 124, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.676369, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.536229, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977634, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 118, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 185.277139, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.58943, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.8892, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.45771366415651, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.3, "STAR_mqc-generalstats-star-uniquely_mapped": 216856377, "fastp_mqc-generalstats-fastp-pct_duplication": 33.667, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976595, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 51982164559, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 459945424, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.529407, "fastp_mqc-generalstats-fastp-pct_surviving": 98.37768229970146, "fastp_mqc-generalstats-fastp-pct_adapter": 75.79827102096603, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f39d87-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 120.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.8902014252891, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 225120751, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.2525680149573, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 51, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 233765125, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f39d87-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.86901173132765, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 233765125, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f39d87-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.25436868901123, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 115.594135259839, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229972712, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.25436868901123, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 115.594135259839, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 229972712 }, { "Sample": "aih-tih-sc-f39d87-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.05817737201895, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 115.84931633106105, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229972712, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.05817737201895, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 115.84931633106105, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 229972712 }, { "Sample": "aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 82768656, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 119.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 114, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.68, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.3, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.2, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.47, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 334579400, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00924, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.750342, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 83530550, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.832568, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.875885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.130421, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.124115, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 69544890, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 34853065, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10894138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4938774, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 105.041139, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 46, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.582622, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.318318, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97782, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 117, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 160.173484, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.757339, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.6676, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.8647365103102, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.24, "STAR_mqc-generalstats-star-uniquely_mapped": 157655861, "fastp_mqc-generalstats-fastp-pct_duplication": 46.1853, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.976663, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 37925976989, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 334579400, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540077, "fastp_mqc-generalstats-fastp-pct_surviving": 97.90811495679914, "fastp_mqc-generalstats-fastp-pct_adapter": 77.19096063653627, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 119.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.38854573832101, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 161248109, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.29292098234315, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 170863978, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.42171285639364, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 170863978, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.20178290935945, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 115.92644316416373, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 167289700, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.20178290935945, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 115.92644316416373, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 167289700 }, { "Sample": "aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.59769745449584, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 116.18890293903331, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 167289700, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.59769745449584, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 116.18890293903331, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 167289700 }, { "Sample": "aih-tih-sc-f71b32-R1_B23WHYVLT4_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 359517249, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.39, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.51, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.06, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.74, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590340282, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.489919, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 301121218, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.930686, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.958826, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058006, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.041174, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 280249434, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 141540567, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 17466861, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6078069, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 543.215136, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 263, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.729259, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.629137, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.977564, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 170, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 389.840622, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.492761, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 96.3167, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.77146494064529, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.12, "STAR_mqc-generalstats-star-uniquely_mapped": 280768679, "fastp_mqc-generalstats-fastp-pct_duplication": 34.3149, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97658, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74850985575, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590340282, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.535933, "fastp_mqc-generalstats-fastp-pct_surviving": 98.39004700000001, "fastp_mqc-generalstats-fastp-pct_adapter": 54.329337499999994, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f71b32-R1_B23WHYVLT4_1_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 148.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.56207183571458, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287974105, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.0564537357595, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 317577325, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f71b32-R1_B23WHYVLT4_1_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.24888795392162, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 317577325, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null }, { "Sample": "aih-tih-sc-f71b32-R1_B23WHYVLT4_1_trimmed_1", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.67922635310173, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.75105565979317, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295170141, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.67922635310173, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.75105565979317, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295170141 }, { "Sample": "aih-tih-sc-f71b32-R1_B23WHYVLT4_1_trimmed_2", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null, "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null, "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.047408970755, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.90466811817527, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295170141, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.047408970755, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.90466811817527, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295170141 } ] }