File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0018/B23WHYVLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0018_2-2cae617
- Published
- May 16, 2026 9:35 AM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | IS_CONTAMINATED | CONTAMINATION_PCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_B23WHYVLT4_1 | 9999000000.0 | 423956076.0 | 171.7 | 155.0 | 0.02 | 1.91 | 0.86 | 0.0 | 0.04 | 5.45 | 1.2 | 0.0 | Yes | 62.13 | 590655984.0 | 0.005449 | 0.464602 | 316235912.0 | 0.940292 | 0.971049 | 0.049531 | 0.028951 | 297354088.0 | 150620479.0 | 15663421.0 | 4490578.0 | 650.946563 | 263.0 | 0.710383 | 0.610723 | 0.977127 | 0.0 | 302 | 912.870801 | 0.467148 | 0.0 | 97.5391 | 90.62981131573254 | 96.14 | 283915420.0 | 35.104800000000004 | 0.976236 | 78880894347.0 | 590655984.0 | 0.53582 | 98.44266400000001 | 40.201056333333334 | |||||||||
| NTC_0001_0001_B23WHYVLT4_1 | 9999000000.0 | 65229.0 | 44.7 | 31.0 | 0.0 | 0.0 | 0.35 | 0.0 | 0.0 | 0.0 | 1.1 | 0.0 | Skipped | N/A | 46656.0 | 0.635352 | 0.184907 | 38029.0 | 0.007547 | 0.037572 | 0.212969 | 0.962428 | 287.0 | 151.0 | 8099.0 | 3868.0 | 0.000421 | 0.0 | 0.0 | 0.0 | 0.828395 | 0.0 | 63 | 68.563072 | 0.507083 | 0.0284 | 20.0867 | 3.0077365668358054 | 9.11 | 2126.0 | 65.8145 | 0.842685 | 4604474.0 | 46656.0 | 0.688286 | 2.4303367028973804 | 50.13361226086531 |
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