File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0018/B23WHYVLT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
Size
2.7 KB
Workflow Run
dev_rna_exp0018_2-2cae617
Published
May 16, 2026 9:36 AM

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 79.364 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 93.6048 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 92.595 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9777.375596968 bclconvert
NTC_0001_0001_B23WHYVLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 959867 bclconvert
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 406013954 bclconvert
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 590655984.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.940292 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.971049 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.049531 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.028951 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 297354088.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 150620479.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 15663421.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 4490578.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 283915420.0 star
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005449 star
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 155.0 kallisto
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.04 kallisto
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 5.45 kallisto
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.13 contamination
NTC_0001_0001_B23WHYVLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 46656.0 seqtools
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 53 fusion
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_13_B23WHYVLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 53 fusion
28 rows