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BCL CONVERT QC REPORT - DETAILED
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1. % UNDETERMINED PER LANE
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%_Undetermined Undetermined_Reads Total_Reads
Lane
1 7.73 309611837 4003982799
2 7.63 308632215 4042524069
3 7.72 310603780 4021848294
4 7.58 306145030 4038106205
5 7.42 302305448 4075270033
6 7.75 312709069 4033267142
7 7.55 309485428 4100159606
8 7.62 309533554 4060257736
2. SAMPLES WITH LOW READS (NON-NTC)
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No samples found with low reads
3. NTC SAMPLES WITH HIGH READS
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No NTC samples found with high reads
4. TOP UNKNOWN BARCODES
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Found 116 significant unknown barcodes:
Lane index index2 # Reads % of Unknown Barcodes % of All Reads Percentage_of_Lane Percentage_of_Total
0 1 CCAGTCGTCA GGGGGGGGGG 8337867 0.026930 0.002082 0.208239 0.025754
1 1 GCAATCTGCT TATTGCGCTA 6626387 0.021402 0.001655 0.165495 0.020467
2 1 GAGCAGCTTG GGGGGGGGGG 6216276 0.020078 0.001553 0.155252 0.019201
3 1 CCTAAGCTGA GGGGGGGGGG 5736898 0.018529 0.001433 0.143280 0.017720
4 1 AGATTAGCGT GGGGGGGGGG 5584967 0.018039 0.001395 0.139485 0.017251
5 1 AGTATCCGAT ACGAACCAAG 4857676 0.015690 0.001213 0.121321 0.015004
6 1 TATCCGCGTC GGGGGGGGGG 4626144 0.014942 0.001155 0.115539 0.014289
7 1 ATGACAGCAC GGGGGGGGGG 3892670 0.012573 0.000972 0.097220 0.012024
8 1 TGGAGATCGA GGGGGGGGGG 3572485 0.011539 0.000892 0.089223 0.011035
9 1 TAACTTGGTC GGGGGGGGGG 3513300 0.011347 0.000877 0.087745 0.010852
10 1 GCCACCTAGT GGGGGGGGGG 2871254 0.009274 0.000717 0.071710 0.008869
11 1 ACGAGACGTC GGGGGGGGGG 2825204 0.009125 0.000706 0.070560 0.008726
12 1 TCCAACTGAA GGGGGGGGGG 2751699 0.008888 0.000687 0.068724 0.008499
13 1 CGCACTGGTA GGGGGGGGGG 2128660 0.006875 0.000532 0.053164 0.006575
14 1 CGATGTCTTG GGGGGGGGGG 2081455 0.006723 0.000520 0.051985 0.006429
15 2 CCAGTCGTCA GGGGGGGGGG 8218795 0.026630 0.002033 0.203308 0.025386
16 2 GCAATCTGCT TATTGCGCTA 6685650 0.021662 0.001654 0.165383 0.020650
17 2 GAGCAGCTTG GGGGGGGGGG 6219202 0.020151 0.001538 0.153845 0.019210
18 2 CCTAAGCTGA GGGGGGGGGG 5685542 0.018422 0.001406 0.140643 0.017561
19 2 AGATTAGCGT GGGGGGGGGG 5515228 0.017870 0.001364 0.136430 0.017035
20 2 AGTATCCGAT ACGAACCAAG 4894697 0.015859 0.001211 0.121080 0.015119
21 2 TATCCGCGTC GGGGGGGGGG 4584972 0.014856 0.001134 0.113419 0.014162
22 2 ATGACAGCAC GGGGGGGGGG 3836934 0.012432 0.000949 0.094914 0.011851
23 2 TGGAGATCGA GGGGGGGGGG 3524373 0.011419 0.000872 0.087182 0.010886
24 2 TAACTTGGTC GGGGGGGGGG 3476291 0.011264 0.000860 0.085993 0.010737
25 2 GCCACCTAGT GGGGGGGGGG 2825582 0.009155 0.000699 0.069896 0.008728
26 2 ACGAGACGTC GGGGGGGGGG 2777107 0.008998 0.000687 0.068697 0.008578
27 2 TCCAACTGAA GGGGGGGGGG 2720706 0.008815 0.000673 0.067302 0.008404
28 2 CGCACTGGTA GGGGGGGGGG 2106267 0.006825 0.000521 0.052103 0.006506
29 3 CCAGTCGTCA GGGGGGGGGG 8197804 0.026393 0.002038 0.203832 0.025321
30 3 GCAATCTGCT TATTGCGCTA 6667662 0.021467 0.001658 0.165786 0.020595
31 3 GAGCAGCTTG GGGGGGGGGG 6111079 0.019675 0.001519 0.151947 0.018876
32 3 CCTAAGCTGA GGGGGGGGGG 5706798 0.018373 0.001419 0.141895 0.017627
33 3 AGATTAGCGT GGGGGGGGGG 5480667 0.017645 0.001363 0.136272 0.016928
34 3 AGTATCCGAT ACGAACCAAG 4881117 0.015715 0.001214 0.121365 0.015077
35 3 TATCCGCGTC GGGGGGGGGG 4538491 0.014612 0.001128 0.112846 0.014018
36 3 ATGACAGCAC GGGGGGGGGG 3831730 0.012336 0.000953 0.095273 0.011835
37 3 TAACTTGGTC GGGGGGGGGG 3470353 0.011173 0.000863 0.086288 0.010719
38 3 TGGAGATCGA GGGGGGGGGG 3452974 0.011117 0.000859 0.085855 0.010665
39 3 GCCACCTAGT GGGGGGGGGG 2778043 0.008944 0.000691 0.069074 0.008581
40 3 ACGAGACGTC GGGGGGGGGG 2759015 0.008883 0.000686 0.068601 0.008522
41 3 TCCAACTGAA GGGGGGGGGG 2666072 0.008584 0.000663 0.066290 0.008235
42 3 CGCACTGGTA GGGGGGGGGG 2101461 0.006766 0.000523 0.052251 0.006491
43 3 AACGAAGATC GGGGGGGGGG 2013499 0.006483 0.000501 0.050064 0.006219
44 4 CCAGTCGTCA GGGGGGGGGG 7981195 0.026070 0.001976 0.197647 0.024652
45 4 GCAATCTGCT TATTGCGCTA 6706390 0.021906 0.001661 0.166078 0.020714
46 4 GAGCAGCTTG GGGGGGGGGG 5969234 0.019498 0.001478 0.147823 0.018438
47 4 CCTAAGCTGA GGGGGGGGGG 5551000 0.018132 0.001375 0.137465 0.017146
48 4 AGATTAGCGT GGGGGGGGGG 5319979 0.017377 0.001317 0.131744 0.016432
49 4 AGTATCCGAT ACGAACCAAG 4893989 0.015986 0.001212 0.121195 0.015116
50 4 TATCCGCGTC GGGGGGGGGG 4440834 0.014506 0.001100 0.109973 0.013717
51 4 ATGACAGCAC GGGGGGGGGG 3730100 0.012184 0.000924 0.092373 0.011521
52 4 TAACTTGGTC GGGGGGGGGG 3412453 0.011147 0.000845 0.084506 0.010540
53 4 TGGAGATCGA GGGGGGGGGG 3396409 0.011094 0.000841 0.084109 0.010491
54 4 GCCACCTAGT GGGGGGGGGG 2762012 0.009022 0.000684 0.068399 0.008531
55 4 ACGAGACGTC GGGGGGGGGG 2720072 0.008885 0.000674 0.067360 0.008402
56 4 TCCAACTGAA GGGGGGGGGG 2631882 0.008597 0.000652 0.065176 0.008129
57 4 CGCACTGGTA GGGGGGGGGG 2072402 0.006769 0.000513 0.051321 0.006401
58 5 CCAGTCGTCA GGGGGGGGGG 7779615 0.025734 0.001909 0.190898 0.024029
59 5 GCAATCTGCT TATTGCGCTA 6742168 0.022303 0.001654 0.165441 0.020825
60 5 GAGCAGCTTG GGGGGGGGGG 5978995 0.019778 0.001467 0.146714 0.018468
61 5 CCTAAGCTGA GGGGGGGGGG 5440028 0.017995 0.001335 0.133489 0.016803
62 5 AGATTAGCGT GGGGGGGGGG 5247951 0.017360 0.001288 0.128776 0.016210
63 5 AGTATCCGAT ACGAACCAAG 4934511 0.016323 0.001211 0.121084 0.015242
64 5 TATCCGCGTC GGGGGGGGGG 4379596 0.014487 0.001075 0.107468 0.013528
65 5 ATGACAGCAC GGGGGGGGGG 3676119 0.012160 0.000902 0.090206 0.011355
66 5 TGGAGATCGA GGGGGGGGGG 3336070 0.011035 0.000819 0.081861 0.010304
67 5 TAACTTGGTC GGGGGGGGGG 3332825 0.011025 0.000818 0.081782 0.010294
68 5 GCCACCTAGT GGGGGGGGGG 2728834 0.009027 0.000670 0.066961 0.008429
69 5 ACGAGACGTC GGGGGGGGGG 2609258 0.008631 0.000640 0.064027 0.008059
70 5 TCCAACTGAA GGGGGGGGGG 2571672 0.008507 0.000631 0.063104 0.007943
71 6 CCAGTCGTCA GGGGGGGGGG 8322877 0.026615 0.002064 0.206356 0.025707
72 6 GCAATCTGCT TATTGCGCTA 6659067 0.021295 0.001651 0.165104 0.020568
73 6 GAGCAGCTTG GGGGGGGGGG 6266557 0.020040 0.001554 0.155372 0.019356
74 6 CCTAAGCTGA GGGGGGGGGG 5774365 0.018466 0.001432 0.143168 0.017836
75 6 AGATTAGCGT GGGGGGGGGG 5556283 0.017768 0.001378 0.137761 0.017162
76 6 AGTATCCGAT ACGAACCAAG 4893501 0.015649 0.001213 0.121328 0.015115
77 6 TATCCGCGTC GGGGGGGGGG 4643234 0.014848 0.001151 0.115123 0.014342
78 6 ATGACAGCAC GGGGGGGGGG 3892918 0.012449 0.000965 0.096520 0.012024
79 6 TGGAGATCGA GGGGGGGGGG 3582790 0.011457 0.000888 0.088831 0.011066
80 6 TAACTTGGTC GGGGGGGGGG 3531914 0.011295 0.000876 0.087570 0.010909
81 6 GCCACCTAGT GGGGGGGGGG 2900210 0.009274 0.000719 0.071907 0.008958
82 6 ACGAGACGTC GGGGGGGGGG 2845011 0.009098 0.000705 0.070539 0.008788
83 6 TCCAACTGAA GGGGGGGGGG 2752254 0.008801 0.000682 0.068239 0.008501
84 6 CGCACTGGTA GGGGGGGGGG 2164687 0.006922 0.000537 0.053671 0.006686
85 6 AACGAAGATC GGGGGGGGGG 2057071 0.006578 0.000510 0.051003 0.006354
86 6 CGATGTCTTG GGGGGGGGGG 2048933 0.006552 0.000508 0.050801 0.006329
87 7 CCAGTCGTCA GGGGGGGGGG 8219668 0.026559 0.002005 0.200472 0.025389
88 7 GCAATCTGCT TATTGCGCTA 6764398 0.021857 0.001650 0.164979 0.020894
89 7 GAGCAGCTTG GGGGGGGGGG 6412469 0.020720 0.001564 0.156396 0.019807
90 7 CCTAAGCTGA GGGGGGGGGG 5712062 0.018457 0.001393 0.139313 0.017643
91 7 AGATTAGCGT GGGGGGGGGG 5576424 0.018018 0.001360 0.136005 0.017224
92 7 AGTATCCGAT ACGAACCAAG 4973970 0.016072 0.001213 0.121312 0.015363
93 7 TATCCGCGTC GGGGGGGGGG 4651953 0.015031 0.001135 0.113458 0.014369
94 7 ATGACAGCAC GGGGGGGGGG 3874521 0.012519 0.000945 0.094497 0.011967
95 7 TGGAGATCGA GGGGGGGGGG 3567567 0.011527 0.000870 0.087010 0.011019
96 7 TAACTTGGTC GGGGGGGGGG 3490969 0.011280 0.000851 0.085142 0.010783
97 7 GCCACCTAGT GGGGGGGGGG 2897296 0.009362 0.000707 0.070663 0.008949
98 7 ACGAGACGTC GGGGGGGGGG 2750559 0.008888 0.000671 0.067084 0.008496
99 7 TCCAACTGAA GGGGGGGGGG 2741406 0.008858 0.000669 0.066861 0.008468
100 7 CGCACTGGTA GGGGGGGGGG 2076488 0.006709 0.000506 0.050644 0.006414
101 7 AACGAAGATC GGGGGGGGGG 2068909 0.006685 0.000505 0.050459 0.006390
102 8 CCAGTCGTCA GGGGGGGGGG 8497299 0.027452 0.002093 0.209280 0.026246
103 8 GCAATCTGCT TATTGCGCTA 6663183 0.021527 0.001641 0.164107 0.020581
104 8 GAGCAGCTTG GGGGGGGGGG 6512598 0.021040 0.001604 0.160399 0.020116
105 8 CCTAAGCTGA GGGGGGGGGG 5756659 0.018598 0.001418 0.141781 0.017781
106 8 AGATTAGCGT GGGGGGGGGG 5723431 0.018491 0.001410 0.140962 0.017678
107 8 AGTATCCGAT ACGAACCAAG 4918985 0.015892 0.001211 0.121150 0.015194
108 8 TATCCGCGTC GGGGGGGGGG 4749606 0.015344 0.001170 0.116978 0.014670
109 8 ATGACAGCAC GGGGGGGGGG 3950628 0.012763 0.000973 0.097300 0.012203
110 8 TGGAGATCGA GGGGGGGGGG 3656756 0.011814 0.000901 0.090062 0.011295
111 8 TAACTTGGTC GGGGGGGGGG 3521939 0.011378 0.000867 0.086742 0.010878
112 8 GCCACCTAGT GGGGGGGGGG 2896098 0.009356 0.000713 0.071328 0.008945
113 8 ACGAGACGTC GGGGGGGGGG 2825337 0.009128 0.000696 0.069585 0.008727
114 8 TCCAACTGAA GGGGGGGGGG 2825222 0.009127 0.000696 0.069582 0.008726
115 8 CGCACTGGTA GGGGGGGGGG 2093256 0.006763 0.000516 0.051555 0.006466
5. BARCODES WITH HIGH MISMATCH RATES
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No barcodes found with high mismatch rates
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FINAL STATUS CHECK
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Overall % Undetermined: 7.63%
Status: WARNING
Reason(s):
Overall undetermined 7.63% >= 5.0%