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aih-tih-sc-37dd87-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0018/B23WHYVLT4/nfcore_rnafusion__73d51683--20260607-225254/arriba/aih-tih-sc-37dd87-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt
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dev_rna_exp0018_2-73d51683
Published
Jun 08, 2026 2:39 AM

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ARRIBA FILTERING SUMMARY
================================================================================

Input file: aih-tih-sc-37dd87-R1_B23WHYVLT4_1.arriba.fusions.tsv
Filter config: arriba_filter_config.yaml
AIH blacklist breakpoints (staged path): blacklist_breakpoint_database_2026-04-27.tsv
Output TSV (all rows): aih-tih-sc-37dd87-R1_B23WHYVLT4_1.arriba.fusions.filtered.tsv
Output TSV (PASS only): aih-tih-sc-37dd87-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv

Total fusions: 273
Pass (FILTER=PASS): 20 (7.3%)
Fail (FILTER=FAIL): 253 (92.7%)

AIH curated blacklist:
  Total blacklisted: 9
  All blacklisted rows have FILTER=FAIL

Failure reasons:
  confidence_below_min(medium<high): 63
  confidence_below_min(low<high): 33
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 31
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 24
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 18
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 17
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 11
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 11
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 11
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(medium<high);aih_curated_blacklist: 4
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0);aih_curated_blacklist: 2
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 1
  total_reads_below_min(4.0<8.0): 1
  total_reads_below_min(3.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0);aih_curated_blacklist: 1
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 1
  confidence_below_min(low<high);aih_curated_blacklist: 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0);aih_curated_blacklist: 1

Breakdown by confidence:
  high: 20 pass, 2 fail (total: 22)
  low: 0 pass, 141 fail (total: 141)
  medium: 0 pass, 110 fail (total: 110)