#==================================================
#All numbers are READ count
#==================================================

Total records:                          509340939

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        65579421
Unmapped reads:                         4738901
mapq < mapq_cut (non-unique):           27387097

mapq >= mapq_cut (unique):              411635520
Read-1:                                 206066095
Read-2:                                 205569425
Reads map to '+':                       205844066
Reads map to '-':                       205791454
Non-splice reads:                       252018564
Splice reads:                           159616956
Reads mapped in proper pairs:           410102616
Proper-paired reads map to different chrom:0