Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/e9a7b55535290711e042623bb0bcf6/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/b5ac5161e7edbe8500ccaa3ddd2f57/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/0e14d564c92aee90169d8f43a34879/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/b5ac5161e7edbe8500ccaa3ddd2f57/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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