Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/d1bc1f1ae73635fdb92f4916d1128d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/eaa2ecb12ed03647e38ce6070594e7/aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/d1bc1f1ae73635fdb92f4916d1128d/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory