Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/3b6323ed88109c4f4ab47fcd327391/aih-tih-sc-0183f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/981cd7c5639536ebb7ee36006f91d2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/277466002b9b93a2ca30c233ed6620/aih-tih-sc-0183f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/981cd7c5639536ebb7ee36006f91d2/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 180578186
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0183f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	180578186
Known Splicing Events:	178620556
Partial Novel Splicing Events:	1027533
Novel Splicing Events:	849571
Filtered Splicing Events:	80526

Total splicing  Junctions:	332379
Known Splicing Junctions:	221001
Partial Novel Splicing Junctions:	66101
Novel Splicing Junctions:	45277

===================================================================
Create BED file ...
Create Interact file ...