File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/feea69a06cb657d0b8398e624b3221/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 330
  Pass (FILTER=PASS): 45 (13.6%)
  Fail (FILTER=FAIL): 285 (86.4%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 102
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 22
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 21
  confidence_below_min(low<high): 18
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 17
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 16
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 16
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 13
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 13
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 6
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 5
  total_reads_below_min(3.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3

Breakdown by confidence:
  high: 45 pass, 8 fail (total: 53)
  low: 0 pass, 106 fail (total: 106)
  medium: 0 pass, 171 fail (total: 171)
Arriba filter: 330 rows -> 45 PASS; wrote aih-tih-sc-176637-R1_B23WHYVLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-176637-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-176637-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt