File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c1e645a1a0623241402cc177db6d45/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:18:17Z thread 427 Sample sheet being processed by common lib? Yes
2026-06-08T06:18:17Z thread 427 SampleSheet Settings: 
2026-06-08T06:18:17Z thread 427   FastqCompressionFormat = gzip
2026-06-08T06:18:17Z thread 427   NoLaneSplitting = FALSE
2026-06-08T06:18:17Z thread 427   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:18:17Z thread 427   SoftwareVersion = 4.3.6
2026-06-08T06:18:17Z thread 427 
2026-06-08T06:18:17Z thread 427 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:18:17Z thread 427 shared-thread-linux-native-asio output is disabled
2026-06-08T06:18:17Z thread 427 bcl-convert Version 4.4.6
2026-06-08T06:18:17Z thread 427 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:18:17Z thread 427 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:18:17Z thread 427 Conversion Begins.
2026-06-08T06:18:17Z thread 427 Input BCL Information:
2026-06-08T06:18:17Z thread 427     Read Structure: 2026-06-08T06:18:17Z thread 427 Y1512026-06-08T06:18:17Z thread 427 ;2026-06-08T06:18:17Z thread 427 I102026-06-08T06:18:17Z thread 427 ;2026-06-08T06:18:17Z thread 427 I102026-06-08T06:18:17Z thread 427 ;2026-06-08T06:18:17Z thread 427 Y1512026-06-08T06:18:17Z thread 427 
2026-06-08T06:18:17Z thread 427     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:18:17Z thread 427     BCL file format: cbcl
2026-06-08T06:18:17Z thread 427     Positions file format: slocs
2026-06-08T06:18:17Z thread 427     Filter file format: filter
2026-06-08T06:18:17Z thread 427 Conversion Information:
2026-06-08T06:18:17Z thread 427     Tile filtering: converting 784/6272 tiles
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 1: 96
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 2: 96
2026-06-08T06:18:17Z thread 427     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 3: 96
2026-06-08T06:18:17Z thread 427     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 4: 96
2026-06-08T06:18:17Z thread 427     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 5: 96
2026-06-08T06:18:17Z thread 427     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 6: 96
2026-06-08T06:18:17Z thread 427     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 7: 96
2026-06-08T06:18:17Z thread 427     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 427     Sample Count for Lane 8: 96
2026-06-08T06:18:17Z thread 427     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 427     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:18:17Z thread 427 # CPU hw threads available: 64
2026-06-08T06:18:18Z thread 427 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:18:18Z thread 427 SW compressors: 64
2026-06-08T06:18:18Z thread 427 SW decompressors: 32
2026-06-08T06:18:18Z thread 427 SW FASTQ compression level: 1
2026-06-08T06:50:00Z thread 427 Lane 1 Post-run Information:
2026-06-08T06:50:00Z thread 427     Total clusters: 4003982799
2026-06-08T06:50:00Z thread 427     Total Genomic Reads: 8007965598
2026-06-08T06:50:00Z thread 427     Total Genomic Input Gigabases 1209.20
2026-06-08T06:50:00Z thread 427     Minimum reads for a sample: 240600
2026-06-08T06:50:00Z thread 427     Maximum reads for a sample: 141486878
2026-06-08T06:50:00Z thread 427     Average reads per sample: 76966061.71
2026-06-08T06:50:00Z thread 427     Undetermined reads: 619223674
2026-06-08T06:50:01Z thread 427 Conversion Complete.