Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/e9a7b55535290711e042623bb0bcf6/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/091fd95b55757aa7a51cb1d96c4dce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/091fd95b55757aa7a51cb1d96c4dce/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/0e14d564c92aee90169d8f43a34879/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam ... Finished