Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/2378e910b7452920b7fd0f941d93b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1fffb548fa4e10c9ec207fcbade05d/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/2378e910b7452920b7fd0f941d93b0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/774463dd25704cd3f82a356f79188a/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
processing aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam ... Finished