Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/a0b0a4d346bdbddf8bd90474d6d42f/aih-tih-sc-76a805-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/18f493e22a8a8f02b51498f91f1948/aih-tih-sc-76a805-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/07425b0ae5e7b360f8d8cc28bc08c2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/07425b0ae5e7b360f8d8cc28bc08c2/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory