Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-37dd87-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-37dd87-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:38:07.790 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:38:07 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-37dd87-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-37dd87-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:38:07 GMT 2026] Executing as ?@nf-5900178ff369d60bf604d0b40579c473-d08ff-hvx8x on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:38:07 MarkDuplicates Start of doWork freeMemory: 105826064; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:38:07 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:38:07 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,435,733
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 3403 as yet unmatched pairs. 232 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:6,234,492
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 6461 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:10,135,137
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 9499 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:12,277,139
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 12477 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:16,567,222
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 15234 as yet unmatched pairs. 396 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:19,308,503
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 17678 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:21,873,371
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 20961 as yet unmatched pairs. 516 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:23,310,903
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 23809 as yet unmatched pairs. 525 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:25,826,666
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 26192 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:27,551,724
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 28898 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:30,964,778
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 31922 as yet unmatched pairs. 469 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:32,363,730
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 34606 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:35,405,042
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 37659 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:37,509,485
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 40818 as yet unmatched pairs. 561 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:39,439,417
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 44054 as yet unmatched pairs. 1071 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:41,028,195
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 45907 as yet unmatched pairs. 252 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:43,447,145
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 48611 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:43,992,327
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 51835 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:46,025,777
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 54880 as yet unmatched pairs. 483 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:51,406,019
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 58558 as yet unmatched pairs. 1433 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:53,952,083
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 60114 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:61,129,541
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 63855 as yet unmatched pairs. 1100 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:64,855,683
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 66041 as yet unmatched pairs. 501 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:77,062,958
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 68778 as yet unmatched pairs. 626 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:81,943,462
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 71783 as yet unmatched pairs. 1112 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:88,860,190
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 73826 as yet unmatched pairs. 461 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:92,478,661
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 76105 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:94,903,136
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 79698 as yet unmatched pairs. 1098 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:108,143,667
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 81424 as yet unmatched pairs. 462 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:109,508,148
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 83843 as yet unmatched pairs. 199 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:111,691,362
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 87332 as yet unmatched pairs. 913 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:113,856,566
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 89414 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:114,732,662
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 93791 as yet unmatched pairs. 1982 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:117,074,961
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 94759 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,649
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 101248 as yet unmatched pairs. 4249 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:119,969,615
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 100925 as yet unmatched pairs. 1224 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:143,880,481
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 101419 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:146,092,410
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 103361 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:147,966,602
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 104615 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:148,953,756
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 106087 as yet unmatched pairs. 707 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,716
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 107025 as yet unmatched pairs. 314 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:150,156,064
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 109211 as yet unmatched pairs. 479 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:150,946,985
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 112532 as yet unmatched pairs. 1085 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:151,519,220
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 114328 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:153,948,516
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 117406 as yet unmatched pairs. 461 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:154,173,101
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 127161 as yet unmatched pairs. 7681 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,098
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 123446 as yet unmatched pairs. 1249 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:155,186,122
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 125446 as yet unmatched pairs. 415 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:155,676,663
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 128804 as yet unmatched pairs. 1361 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,196
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 133767 as yet unmatched pairs. 3361 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:156,671,943
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 134516 as yet unmatched pairs. 1024 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:159,920,404
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 137020 as yet unmatched pairs. 851 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:161,040,831
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 139359 as yet unmatched pairs. 462 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:162,761,355
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 141821 as yet unmatched pairs. 311 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:169,125,001
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 152507 as yet unmatched pairs. 8155 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:171,542,139
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 148409 as yet unmatched pairs. 1513 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:174,877,569
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 150763 as yet unmatched pairs. 1337 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:180,413,381
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 152458 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:185,099,840
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 155402 as yet unmatched pairs. 540 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:186,347,365
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 160992 as yet unmatched pairs. 3610 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:197,546,760
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 160501 as yet unmatched pairs. 706 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:201,870,727
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 162722 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:203,829,779
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 167443 as yet unmatched pairs. 2321 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:205,771,491
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 168022 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:207,887,458
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 170741 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:214,646,392
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 173583 as yet unmatched pairs. 444 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:223,745,339
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 176200 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:225,519,502
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 178854 as yet unmatched pairs. 685 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:226,388,657
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 181478 as yet unmatched pairs. 783 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:228,323,343
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 184164 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:232,399,136
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 187484 as yet unmatched pairs. 339 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:235,702,889
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 190379 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr1:244,055,111
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 192856 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:247,156,963
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 196674 as yet unmatched pairs. 1251 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 3s. Last read position: chr2:8,730,775
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 198371 as yet unmatched pairs. 195226 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:15,292,691
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 201167 as yet unmatched pairs. 197986 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:24,074,105
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 204254 as yet unmatched pairs. 201046 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:26,254,258
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 206963 as yet unmatched pairs. 203722 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:27,485,018
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 209324 as yet unmatched pairs. 206029 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:29,152,717
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 212627 as yet unmatched pairs. 209288 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 276467 as yet unmatched pairs. 205893 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 458856 as yet unmatched pairs. 191937 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 1094895 as yet unmatched pairs. 143418 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 1351684 as yet unmatched pairs. 122664 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 1355009 as yet unmatched pairs. 122377 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:36,537,404
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 1441843 as yet unmatched pairs. 114858 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:38,750,176
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 1438782 as yet unmatched pairs. 111742 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,524
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 1436596 as yet unmatched pairs. 109521 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:44,321,325
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 1433462 as yet unmatched pairs. 106362 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:53,801,444
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 1431329 as yet unmatched pairs. 104160 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:55,234,878
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 1431449 as yet unmatched pairs. 104242 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 3s. Last read position: chr2:60,768,514
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 1425706 as yet unmatched pairs. 98467 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:63,882,548
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 1424920 as yet unmatched pairs. 97635 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:69,519,187
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 1420767 as yet unmatched pairs. 93446 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:73,252,822
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 1417990 as yet unmatched pairs. 90596 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:74,675,762
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 1415205 as yet unmatched pairs. 87782 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:86,132,395
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 1412886 as yet unmatched pairs. 85402 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:89,547,128
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 1410906 as yet unmatched pairs. 83401 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:97,144,638
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 1409137 as yet unmatched pairs. 81584 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:101,004,173
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 1411496 as yet unmatched pairs. 83912 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:108,492,697
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 1404644 as yet unmatched pairs. 77025 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:108,767,753
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 1403987 as yet unmatched pairs. 76346 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:110,534,745
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 1400723 as yet unmatched pairs. 73064 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:112,573,691
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 1399638 as yet unmatched pairs. 71954 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:127,059,079
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 1397145 as yet unmatched pairs. 69401 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:131,520,209
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 1394445 as yet unmatched pairs. 66633 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:148,690,255
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 1392071 as yet unmatched pairs. 64204 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:159,178,939
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 1389414 as yet unmatched pairs. 61504 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:163,611,755
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1386960 as yet unmatched pairs. 59001 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:170,956,528
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 1385304 as yet unmatched pairs. 57281 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:174,720,629
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 1382758 as yet unmatched pairs. 54687 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:179,950,665
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 1379521 as yet unmatched pairs. 51415 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:188,984,916
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 1377512 as yet unmatched pairs. 49372 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:190,979,800
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 1376206 as yet unmatched pairs. 48043 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:197,418,844
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 1372289 as yet unmatched pairs. 44076 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:202,035,621
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 1369672 as yet unmatched pairs. 41425 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:206,771,989
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 1366846 as yet unmatched pairs. 38541 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,055
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 1378581 as yet unmatched pairs. 50239 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,347
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 1370498 as yet unmatched pairs. 42134 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,197
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 1376438 as yet unmatched pairs. 48063 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,856
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 1377899 as yet unmatched pairs. 49489 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,330
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 1366020 as yet unmatched pairs. 37588 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,963
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 1359392 as yet unmatched pairs. 30941 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,179
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 1355035 as yet unmatched pairs. 26557 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:216,676,795
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 1348585 as yet unmatched pairs. 20080 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:219,181,722
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 1343813 as yet unmatched pairs. 15272 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr2:223,777,749
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 1340675 as yet unmatched pairs. 12102 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr2:230,209,992
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 1338816 as yet unmatched pairs. 10200 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,925
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1339002 as yet unmatched pairs. 10356 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr2:237,377,279
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1333377 as yet unmatched pairs. 4653 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr2:241,255,075
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 1331792 as yet unmatched pairs. 2999 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 4s. Last read position: chr3:8,990,579
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 1327440 as yet unmatched pairs. 81013 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:10,270,078
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 1325968 as yet unmatched pairs. 79522 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:13,111,410
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1321950 as yet unmatched pairs. 75472 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:20,125,925
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1319555 as yet unmatched pairs. 73042 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:32,159,642
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 1317117 as yet unmatched pairs. 70537 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:37,282,181
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1315380 as yet unmatched pairs. 68753 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:40,461,464
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 1315179 as yet unmatched pairs. 68521 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:43,702,544
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 1309041 as yet unmatched pairs. 62339 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:46,459,792
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 1306318 as yet unmatched pairs. 59584 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:47,849,191
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 1303810 as yet unmatched pairs. 57046 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr3:48,807,674
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1300993 as yet unmatched pairs. 54193 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:49,358,109
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1298041 as yet unmatched pairs. 51200 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:50,236,367
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 1295956 as yet unmatched pairs. 49084 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr3:52,373,015
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 1292379 as yet unmatched pairs. 45488 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:56,624,536
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 1289872 as yet unmatched pairs. 42945 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:64,022,386
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 1287144 as yet unmatched pairs. 40180 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:97,876,755
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 1284424 as yet unmatched pairs. 37383 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:105,746,003
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 1282387 as yet unmatched pairs. 35320 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:119,436,944
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 1279550 as yet unmatched pairs. 32435 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:122,700,165
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 1278660 as yet unmatched pairs. 31488 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr3:127,016,952
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1274420 as yet unmatched pairs. 27198 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr3:129,584,498
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 1271403 as yet unmatched pairs. 24146 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:138,264,136
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 1268961 as yet unmatched pairs. 21670 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:146,528,734
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 1267205 as yet unmatched pairs. 19839 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:152,456,289
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1265015 as yet unmatched pairs. 17605 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:161,086,685
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 1261394 as yet unmatched pairs. 13923 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:179,203,751
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 1259121 as yet unmatched pairs. 11570 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:184,193,112
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 1256341 as yet unmatched pairs. 8746 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr3:186,786,526
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 1254889 as yet unmatched pairs. 7247 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr3:194,625,975
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 1250820 as yet unmatched pairs. 3113 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:197,682,476
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1248470 as yet unmatched pairs. 721 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr4:1,807,197
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 1245416 as yet unmatched pairs. 48422 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:6,696,969
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1242931 as yet unmatched pairs. 45892 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:15,991,281
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1243485 as yet unmatched pairs. 46423 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:25,662,767
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 1265000 as yet unmatched pairs. 67901 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:25,673,087
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 1263498 as yet unmatched pairs. 66383 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:25,678,443
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 1235580 as yet unmatched pairs. 38452 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr4:39,698,307
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 1229960 as yet unmatched pairs. 32788 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:54,010,080
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 1227340 as yet unmatched pairs. 30101 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:70,158,429
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 1225593 as yet unmatched pairs. 28297 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr4:75,770,527
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 1223091 as yet unmatched pairs. 25764 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr4:78,595,792
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 1220164 as yet unmatched pairs. 22790 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr4:87,108,269
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 1217508 as yet unmatched pairs. 20097 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr4:99,313,955
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 1214930 as yet unmatched pairs. 17473 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr4:108,650,768
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 1213325 as yet unmatched pairs. 15818 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr4:121,870,342
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 1209828 as yet unmatched pairs. 12281 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr4:140,379,119
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 1207604 as yet unmatched pairs. 10017 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:151,148,117
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 1205118 as yet unmatched pairs. 7487 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr4:168,267,664
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 1203009 as yet unmatched pairs. 5324 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr4:184,773,662
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 1200329 as yet unmatched pairs. 2605 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr5:236,425
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1197967 as yet unmatched pairs. 61098 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:10,377,865
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 1195597 as yet unmatched pairs. 58660 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:14,508,185
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 1192986 as yet unmatched pairs. 56019 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:33,989,165
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 1189428 as yet unmatched pairs. 52405 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:37,364,371
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 1186939 as yet unmatched pairs. 49876 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:43,381,770
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 1184487 as yet unmatched pairs. 47393 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:62,306,476
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 1182605 as yet unmatched pairs. 45437 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:71,060,895
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 1179971 as yet unmatched pairs. 42767 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:79,641,157
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1178113 as yet unmatched pairs. 40885 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:94,888,937
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 1175008 as yet unmatched pairs. 37721 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:112,887,119
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1172992 as yet unmatched pairs. 35674 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:132,487,052
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1170193 as yet unmatched pairs. 32809 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr5:138,425,506
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 1167626 as yet unmatched pairs. 30177 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:140,882,392
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 1164917 as yet unmatched pairs. 27390 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:146,510,451
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1162475 as yet unmatched pairs. 24906 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,182
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 1199754 as yet unmatched pairs. 62154 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,700
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1185107 as yet unmatched pairs. 47492 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,307
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 1206454 as yet unmatched pairs. 68800 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:151,109,768
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1150645 as yet unmatched pairs. 12946 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:163,513,612
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1147532 as yet unmatched pairs. 9797 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,803
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1151052 as yet unmatched pairs. 13291 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:177,460,675
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 1142521 as yet unmatched pairs. 4716 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,011
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 1139924 as yet unmatched pairs. 2072 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:2,833,506
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 1137050 as yet unmatched pairs. 90971 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:7,298,807
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 1135848 as yet unmatched pairs. 89730 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:10,404,532
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1132013 as yet unmatched pairs. 85881 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr6:17,637,169
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1129252 as yet unmatched pairs. 83049 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 2s. Last read position: chr6:25,966,725
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1127029 as yet unmatched pairs. 80776 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:26,409,904
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 1124238 as yet unmatched pairs. 77962 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:29,725,295
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 1121145 as yet unmatched pairs. 74838 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:30,590,832
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 1118058 as yet unmatched pairs. 71740 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,618
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1121062 as yet unmatched pairs. 74708 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:31,636,294
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1113043 as yet unmatched pairs. 66663 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,000
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1111976 as yet unmatched pairs. 65575 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,993,479
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1109264 as yet unmatched pairs. 62857 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr6:32,192,154
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1107148 as yet unmatched pairs. 60734 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:32,976,372
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1103912 as yet unmatched pairs. 57468 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,296
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1102977 as yet unmatched pairs. 56509 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:35,087,001
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1098046 as yet unmatched pairs. 51544 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:36,978,543
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 1096881 as yet unmatched pairs. 50327 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:43,009,378
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1092639 as yet unmatched pairs. 46038 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:44,249,431
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1090928 as yet unmatched pairs. 44299 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:53,009,552
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 1086978 as yet unmatched pairs. 40257 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:63,685,322
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1085743 as yet unmatched pairs. 38993 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:75,675,441
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 1082870 as yet unmatched pairs. 36074 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:85,612,836
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 1080171 as yet unmatched pairs. 33352 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:89,846,586
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 1077288 as yet unmatched pairs. 30443 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,745
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 1083148 as yet unmatched pairs. 36243 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:111,008,068
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1071885 as yet unmatched pairs. 24925 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:119,180,408
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 1069183 as yet unmatched pairs. 22186 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr6:130,900,907
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1066833 as yet unmatched pairs. 19790 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:137,878,490
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1064325 as yet unmatched pairs. 17238 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:144,187,011
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1060961 as yet unmatched pairs. 13825 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:150,839,911
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 1059198 as yet unmatched pairs. 12020 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:158,059,269
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1056115 as yet unmatched pairs. 8903 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:158,785,536
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1064391 as yet unmatched pairs. 17146 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:163,563,518
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1051135 as yet unmatched pairs. 3864 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr6:170,318,674
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 1048040 as yet unmatched pairs. 736 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr7:2,607,211
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1044362 as yet unmatched pairs. 95306 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,742
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1052253 as yet unmatched pairs. 103137 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,524
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 1055499 as yet unmatched pairs. 106347 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:5,910,101
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1035547 as yet unmatched pairs. 86369 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:10,982,721
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1033188 as yet unmatched pairs. 83962 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr7:23,507,467
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1031912 as yet unmatched pairs. 82662 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:30,600,014
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1028165 as yet unmatched pairs. 78875 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 71s. Last read position: chr7:40,062,898
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 1025731 as yet unmatched pairs. 76398 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:44,647,710
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 1022857 as yet unmatched pairs. 73491 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:50,674,565
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1020378 as yet unmatched pairs. 70974 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr7:66,241,035
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 1017337 as yet unmatched pairs. 67914 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:73,050,116
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 1015277 as yet unmatched pairs. 65816 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,259
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1015055 as yet unmatched pairs. 65575 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:75,109,013
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 1011789 as yet unmatched pairs. 62290 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:75,985,822
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1010163 as yet unmatched pairs. 60623 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr7:77,610,820
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 1008564 as yet unmatched pairs. 58990 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr7:91,995,634
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 1006958 as yet unmatched pairs. 57340 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:92,294,915
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1002703 as yet unmatched pairs. 53041 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr7:94,663,613
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 1002335 as yet unmatched pairs. 52641 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr7:98,976,689
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 997475 as yet unmatched pairs. 47741 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr7:100,034,138
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 994929 as yet unmatched pairs. 45153 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr7:100,677,605
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 992408 as yet unmatched pairs. 42612 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:102,446,795
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 989403 as yet unmatched pairs. 39574 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:102,667,163
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 988475 as yet unmatched pairs. 38630 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:106,874,765
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 985867 as yet unmatched pairs. 35980 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:116,251,867
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 983385 as yet unmatched pairs. 33450 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr7:121,364,152
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 981079 as yet unmatched pairs. 31119 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:127,698,939
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 981150 as yet unmatched pairs. 31168 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr7:128,089,489
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 979411 as yet unmatched pairs. 29401 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:131,466,292
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 972706 as yet unmatched pairs. 22650 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:137,882,412
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 972409 as yet unmatched pairs. 22309 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr7:138,838,015
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 967746 as yet unmatched pairs. 17625 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr7:140,026,297
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 964988 as yet unmatched pairs. 14834 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:142,802,514
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 963287 as yet unmatched pairs. 13112 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr7:144,286,604
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 960090 as yet unmatched pairs. 9896 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,434
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 958129 as yet unmatched pairs. 7904 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr7:151,565,872
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 954797 as yet unmatched pairs. 4543 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr7:155,706,955
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 952669 as yet unmatched pairs. 2366 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr8:9,556,431
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 949416 as yet unmatched pairs. 64530 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:20,209,454
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 947102 as yet unmatched pairs. 62172 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr8:25,340,879
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 943979 as yet unmatched pairs. 59015 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:29,337,257
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 941051 as yet unmatched pairs. 56052 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:38,337,440
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 938455 as yet unmatched pairs. 53422 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:42,865,460
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 935814 as yet unmatched pairs. 50749 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:47,976,713
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 933522 as yet unmatched pairs. 48436 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr8:60,620,716
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 930323 as yet unmatched pairs. 45201 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:69,604,887
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 928068 as yet unmatched pairs. 42907 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:73,292,365
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 927191 as yet unmatched pairs. 42016 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:89,964,427
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 924132 as yet unmatched pairs. 38934 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr8:98,041,780
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 930843 as yet unmatched pairs. 45621 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,133
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 922297 as yet unmatched pairs. 37043 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr8:101,201,537
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 916147 as yet unmatched pairs. 30862 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr8:109,296,529
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 912991 as yet unmatched pairs. 27670 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:120,226,641
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 910096 as yet unmatched pairs. 24722 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,487
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 908909 as yet unmatched pairs. 23503 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr8:140,664,946
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 905576 as yet unmatched pairs. 20120 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,381,571
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 901168 as yet unmatched pairs. 15682 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,290
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 898394 as yet unmatched pairs. 12885 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,287
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 899152 as yet unmatched pairs. 13643 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,116
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 901253 as yet unmatched pairs. 15737 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,072
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 895256 as yet unmatched pairs. 9739 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,457
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 894182 as yet unmatched pairs. 8654 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr8:144,105,638
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 890335 as yet unmatched pairs. 4786 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr8:144,790,432
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 887420 as yet unmatched pairs. 1846 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr9:5,081,742
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 883578 as yet unmatched pairs. 57849 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:14,120,455
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 893613 as yet unmatched pairs. 67864 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr9:14,307,270
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 890918 as yet unmatched pairs. 65155 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr9:21,334,761
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 876360 as yet unmatched pairs. 50547 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr9:33,328,649
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 874161 as yet unmatched pairs. 48275 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:35,059,723
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 872882 as yet unmatched pairs. 46971 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr9:35,740,946
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 867814 as yet unmatched pairs. 41875 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:65,681,564
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 865018 as yet unmatched pairs. 39040 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:79,706,773
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 862791 as yet unmatched pairs. 36787 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:91,805,183
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 860014 as yet unmatched pairs. 33963 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr9:97,430,996
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 857373 as yet unmatched pairs. 31274 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr9:106,927,574
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 855698 as yet unmatched pairs. 29556 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr9:113,199,853
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 851916 as yet unmatched pairs. 25748 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr9:115,057,344
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 849562 as yet unmatched pairs. 23387 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr9:121,353,261
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 847192 as yet unmatched pairs. 20989 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr9:127,447,713
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 844212 as yet unmatched pairs. 17982 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr9:128,500,720
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 840589 as yet unmatched pairs. 14340 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr9:129,957,359
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 838225 as yet unmatched pairs. 11952 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:131,621,932
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 835658 as yet unmatched pairs. 9358 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr9:134,053,284
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 833188 as yet unmatched pairs. 6861 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr9:136,677,518
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 829555 as yet unmatched pairs. 3207 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr10:246,868
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 826658 as yet unmatched pairs. 63574 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:5,785,225
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 825586 as yet unmatched pairs. 62468 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:12,177,822
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 821640 as yet unmatched pairs. 58499 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr10:17,234,704
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 820027 as yet unmatched pairs. 56842 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr10:24,584,536
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 815946 as yet unmatched pairs. 52736 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr10:28,589,630
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 815064 as yet unmatched pairs. 51848 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr10:32,018,054
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 814742 as yet unmatched pairs. 51503 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr10:32,284,750
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 809656 as yet unmatched pairs. 46403 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr10:38,055,258
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 806489 as yet unmatched pairs. 43214 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr10:46,836,683
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 803782 as yet unmatched pairs. 40488 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:59,793,087
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 810146 as yet unmatched pairs. 46822 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr10:63,214,892
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 799167 as yet unmatched pairs. 35807 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr10:70,161,620
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 797690 as yet unmatched pairs. 34293 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr10:73,653,516
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 793444 as yet unmatched pairs. 29998 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr10:77,807,878
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 790827 as yet unmatched pairs. 27346 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:86,943,253
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 788274 as yet unmatched pairs. 24757 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr10:89,339,813
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 787076 as yet unmatched pairs. 23549 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr10:93,402,245
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 783530 as yet unmatched pairs. 19979 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr10:97,432,677
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 780503 as yet unmatched pairs. 16927 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr10:102,148,927
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 777931 as yet unmatched pairs. 14342 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr10:110,584,210
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 775227 as yet unmatched pairs. 11608 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr10:114,601,831
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 772779 as yet unmatched pairs. 9109 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr10:119,575,743
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 771307 as yet unmatched pairs. 7622 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr10:124,038,572
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 767552 as yet unmatched pairs. 3840 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr10:130,174,894
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 765418 as yet unmatched pairs. 1665 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr11:314,326
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 772760 as yet unmatched pairs. 116376 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:320,624
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 774034 as yet unmatched pairs. 117647 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:810,247
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 757911 as yet unmatched pairs. 101511 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,581
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 754107 as yet unmatched pairs. 97696 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,346
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 754054 as yet unmatched pairs. 97637 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,198
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 753153 as yet unmatched pairs. 96736 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,115
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 751111 as yet unmatched pairs. 94693 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,134
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 751000 as yet unmatched pairs. 94576 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,613
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 748444 as yet unmatched pairs. 92007 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:3,359,447
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 743286 as yet unmatched pairs. 86826 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:6,603,783
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 740532 as yet unmatched pairs. 84060 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:9,472,711
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 738019 as yet unmatched pairs. 81529 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:12,514,023
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 735833 as yet unmatched pairs. 79320 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:18,399,493
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 732917 as yet unmatched pairs. 76383 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:33,706,396
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 729814 as yet unmatched pairs. 73249 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:35,176,571
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 729437 as yet unmatched pairs. 72856 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:46,367,293
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 725077 as yet unmatched pairs. 68472 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:47,422,650
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 721908 as yet unmatched pairs. 65280 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:57,600,022
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 719254 as yet unmatched pairs. 62599 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:59,211,373
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 716940 as yet unmatched pairs. 60271 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:61,314,313
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 714556 as yet unmatched pairs. 57865 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,582
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 711763 as yet unmatched pairs. 55055 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,621,891
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 708938 as yet unmatched pairs. 52219 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr11:63,764,875
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 706346 as yet unmatched pairs. 49611 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr11:64,768,167
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 704288 as yet unmatched pairs. 47530 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr11:65,343,790
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 700412 as yet unmatched pairs. 43643 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:65,655,688
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 698559 as yet unmatched pairs. 41736 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:66,266,130
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 693852 as yet unmatched pairs. 37016 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:67,281,941
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 690957 as yet unmatched pairs. 34107 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr11:68,406,803
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 687148 as yet unmatched pairs. 30276 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr11:71,481,363
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 684976 as yet unmatched pairs. 28060 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr11:73,360,372
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 681587 as yet unmatched pairs. 24648 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr11:76,141,238
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 679115 as yet unmatched pairs. 22144 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr11:86,022,366
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 677076 as yet unmatched pairs. 20074 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr11:96,092,966
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 674728 as yet unmatched pairs. 17714 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr11:105,041,642
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 671306 as yet unmatched pairs. 14282 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr11:114,407,444
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 669665 as yet unmatched pairs. 12626 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr11:118,505,457
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 666385 as yet unmatched pairs. 9326 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr11:119,339,177
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 663376 as yet unmatched pairs. 6306 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr11:125,077,241
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 660667 as yet unmatched pairs. 3578 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr11:130,141,964
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 659446 as yet unmatched pairs. 2329 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr12:885,633
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 656437 as yet unmatched pairs. 91292 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,046,772
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 653024 as yet unmatched pairs. 87869 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:6,587,808
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 650234 as yet unmatched pairs. 85067 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:6,939,119
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 647912 as yet unmatched pairs. 82723 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:8,655,786
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 644486 as yet unmatched pairs. 79286 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:10,213,088
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 642493 as yet unmatched pairs. 77273 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:11,885,940
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 643061 as yet unmatched pairs. 77811 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:14,498,000
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 637483 as yet unmatched pairs. 72209 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr12:14,882,255
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 709332 as yet unmatched pairs. 144046 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:14,885,736
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 632317 as yet unmatched pairs. 67017 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:21,635,548
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 630826 as yet unmatched pairs. 65505 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:27,026,436
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 627229 as yet unmatched pairs. 61879 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:31,985,511
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 625666 as yet unmatched pairs. 60302 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr12:46,207,209
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 622451 as yet unmatched pairs. 57057 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:49,049,837
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 619388 as yet unmatched pairs. 53974 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:49,758,265
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 618126 as yet unmatched pairs. 52699 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:52,238,764
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 615649 as yet unmatched pairs. 50197 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr12:53,308,734
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 611400 as yet unmatched pairs. 45934 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr12:54,349,645
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 610543 as yet unmatched pairs. 45059 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,708
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 607459 as yet unmatched pairs. 41961 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr12:56,644,846
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 604907 as yet unmatched pairs. 39394 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr12:57,128,914
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 600900 as yet unmatched pairs. 35384 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,824,235
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 599121 as yet unmatched pairs. 33591 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr12:68,656,356
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 596035 as yet unmatched pairs. 30484 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr12:76,394,663
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 593274 as yet unmatched pairs. 27700 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr12:95,790,342
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 590640 as yet unmatched pairs. 25046 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr12:103,939,543
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 589286 as yet unmatched pairs. 23674 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr12:108,624,288
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 585528 as yet unmatched pairs. 19901 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr12:112,022,430
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 583001 as yet unmatched pairs. 17359 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr12:112,964,331
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 580541 as yet unmatched pairs. 14883 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr12:118,246,183
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 577371 as yet unmatched pairs. 11688 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr12:121,442,696
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 574159 as yet unmatched pairs. 8448 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr12:123,345,371
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 571935 as yet unmatched pairs. 6220 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,772
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 570513 as yet unmatched pairs. 4783 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr12:133,203,182
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 566152 as yet unmatched pairs. 409 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr13:23,336,318
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 563812 as yet unmatched pairs. 19889 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr13:31,141,244
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 561515 as yet unmatched pairs. 17581 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr13:41,466,895
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 559003 as yet unmatched pairs. 15057 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr13:46,782,707
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 556079 as yet unmatched pairs. 12115 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr13:60,112,172
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 553194 as yet unmatched pairs. 9203 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr13:85,796,089
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 550987 as yet unmatched pairs. 6985 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr13:108,208,502
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 548085 as yet unmatched pairs. 4066 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr13:113,310,850
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 545514 as yet unmatched pairs. 1481 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr14:21,233,953
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 545260 as yet unmatched pairs. 45067 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr14:23,321,739
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 539878 as yet unmatched pairs. 39670 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr14:24,376,515
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 536504 as yet unmatched pairs. 36285 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr14:35,018,994
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 534321 as yet unmatched pairs. 34088 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr14:49,800,483
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 531592 as yet unmatched pairs. 31345 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr14:55,377,986
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 528937 as yet unmatched pairs. 28653 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr14:63,909,178
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 526338 as yet unmatched pairs. 26035 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr14:67,656,442
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 523863 as yet unmatched pairs. 23545 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr14:71,023,215
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 521381 as yet unmatched pairs. 21035 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr14:74,798,277
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 518315 as yet unmatched pairs. 17951 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr14:89,963,414
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 515728 as yet unmatched pairs. 15341 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr14:94,051,304
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 513187 as yet unmatched pairs. 12789 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr14:96,305,709
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 510161 as yet unmatched pairs. 9758 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr14:102,011,995
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 507971 as yet unmatched pairs. 7530 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr14:103,657,646
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 504784 as yet unmatched pairs. 4320 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr14:105,644,530
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 502376 as yet unmatched pairs. 1904 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr15:25,781,084
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 499748 as yet unmatched pairs. 43524 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:34,531,279
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 497125 as yet unmatched pairs. 40889 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:40,553,988
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 494640 as yet unmatched pairs. 38397 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr15:42,147,335
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 491500 as yet unmatched pairs. 35236 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr15:43,766,755
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 491329 as yet unmatched pairs. 35051 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr15:45,366,127
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 486782 as yet unmatched pairs. 30486 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:52,551,907
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 484222 as yet unmatched pairs. 27917 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr15:59,055,778
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 481631 as yet unmatched pairs. 25312 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr15:63,663,072
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 478630 as yet unmatched pairs. 22301 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr15:66,485,062
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 476081 as yet unmatched pairs. 19748 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,220
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 473816 as yet unmatched pairs. 17463 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr15:74,044,423
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 470455 as yet unmatched pairs. 14093 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr15:77,180,200
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 467280 as yet unmatched pairs. 10909 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr15:82,538,927
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 465029 as yet unmatched pairs. 8651 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr15:88,879,195
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 462157 as yet unmatched pairs. 5770 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr15:90,880,176
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 459328 as yet unmatched pairs. 2935 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr15:101,657,007
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 456536 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr16:1,346,909
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 453473 as yet unmatched pairs. 61518 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:2,243,422
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 450356 as yet unmatched pairs. 58389 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,564
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 448427 as yet unmatched pairs. 56442 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:4,382,845
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 444636 as yet unmatched pairs. 52648 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:11,776,759
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 441835 as yet unmatched pairs. 49831 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:14,951,733
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 440307 as yet unmatched pairs. 48297 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:16,329,522
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 438297 as yet unmatched pairs. 46284 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:18,523,910
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 437529 as yet unmatched pairs. 45510 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,910
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 436981 as yet unmatched pairs. 44954 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,497
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 434013 as yet unmatched pairs. 41980 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:22,532,060
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 433206 as yet unmatched pairs. 41170 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr16:24,159,087
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 431908 as yet unmatched pairs. 39866 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr16:28,724,388
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 429380 as yet unmatched pairs. 37333 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:29,464,192
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 428570 as yet unmatched pairs. 36518 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:30,067,493
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 426279 as yet unmatched pairs. 34220 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:30,484,243
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 423896 as yet unmatched pairs. 31829 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,784
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 421283 as yet unmatched pairs. 29207 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr16:34,267,062
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 418361 as yet unmatched pairs. 26276 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:53,470,008
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 415856 as yet unmatched pairs. 23753 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:57,235,210
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 413038 as yet unmatched pairs. 20921 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:67,163,685
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 409812 as yet unmatched pairs. 17691 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:68,698,284
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 406853 as yet unmatched pairs. 14724 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr16:70,529,133
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 404626 as yet unmatched pairs. 12488 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr16:74,893,685
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 401549 as yet unmatched pairs. 9403 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr16:85,654,981
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 398569 as yet unmatched pairs. 6402 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr16:88,734,768
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 395883 as yet unmatched pairs. 3704 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr16:89,965,828
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 392415 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 2s. Last read position: chr17:1,651,496
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 389736 as yet unmatched pairs. 110727 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:3,862,240
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 386770 as yet unmatched pairs. 107754 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr17:4,959,568
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 383779 as yet unmatched pairs. 104751 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 69s. Last read position: chr17:7,241,665
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 380998 as yet unmatched pairs. 101959 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 74s. Last read position: chr17:7,577,576
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 379719 as yet unmatched pairs. 100671 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:8,504,878
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 375651 as yet unmatched pairs. 96602 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:16,423,640
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 373148 as yet unmatched pairs. 94094 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:18,805,556
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 370510 as yet unmatched pairs. 91449 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:28,618,816
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 368080 as yet unmatched pairs. 89014 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr17:29,530,437
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 365174 as yet unmatched pairs. 86108 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:31,998,751
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 362590 as yet unmatched pairs. 83509 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:35,820,214
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 362034 as yet unmatched pairs. 82947 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:37,987,249
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 357477 as yet unmatched pairs. 78380 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,216,836
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 355790 as yet unmatched pairs. 76691 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,359
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 353554 as yet unmatched pairs. 74452 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:40,928,515
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 351584 as yet unmatched pairs. 72477 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:41,867,873
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 346845 as yet unmatched pairs. 67733 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:42,670,342
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 343423 as yet unmatched pairs. 64297 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:44,351,698
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 340958 as yet unmatched pairs. 61825 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:46,548,859
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 338287 as yet unmatched pairs. 59152 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:49,411,757
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 335973 as yet unmatched pairs. 56836 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,479
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 337002 as yet unmatched pairs. 57859 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,180
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 334121 as yet unmatched pairs. 54974 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:51,168,318
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 327030 as yet unmatched pairs. 47867 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr17:59,655,858
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 327623 as yet unmatched pairs. 48455 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr17:60,198,302
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 321008 as yet unmatched pairs. 41829 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:64,452,853
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 318183 as yet unmatched pairs. 38997 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:67,911,848
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 316375 as yet unmatched pairs. 37182 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr17:68,539,883
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 313378 as yet unmatched pairs. 34177 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr17:75,225,210
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 310297 as yet unmatched pairs. 31072 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,672
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 315494 as yet unmatched pairs. 36268 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:76,386,305
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 304446 as yet unmatched pairs. 25219 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:78,171,786
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 301135 as yet unmatched pairs. 21902 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:79,081,982
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 297832 as yet unmatched pairs. 18593 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr17:80,332,359
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 296899 as yet unmatched pairs. 17652 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr17:80,373,124
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 294841 as yet unmatched pairs. 15585 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr17:81,547,396
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 289820 as yet unmatched pairs. 10548 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr17:81,868,385
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 287653 as yet unmatched pairs. 8374 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 2s. Last read position: chr17:82,087,386
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 283746 as yet unmatched pairs. 4452 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr18:163,377
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 279831 as yet unmatched pairs. 12799 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr18:9,593,863
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 276820 as yet unmatched pairs. 9776 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr18:26,078,114
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 278259 as yet unmatched pairs. 11201 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr18:49,490,878
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 272493 as yet unmatched pairs. 5427 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr18:62,539,769
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 268971 as yet unmatched pairs. 1902 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:804,537
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 267794 as yet unmatched pairs. 111357 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:1,270,962
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 262886 as yet unmatched pairs. 106442 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:2,151,310
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 259151 as yet unmatched pairs. 102702 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:4,047,732
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 255930 as yet unmatched pairs. 99474 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr19:5,927,991
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 252674 as yet unmatched pairs. 96211 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr19:7,468,875
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 249998 as yet unmatched pairs. 93534 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr19:8,905,985
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 247417 as yet unmatched pairs. 90951 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:8,972,257
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 244426 as yet unmatched pairs. 87958 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:10,581,599
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 241567 as yet unmatched pairs. 85092 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:11,576,756
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 238522 as yet unmatched pairs. 82045 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:12,944,017
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 235664 as yet unmatched pairs. 79180 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,770
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 237077 as yet unmatched pairs. 80589 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,595
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 233105 as yet unmatched pairs. 76616 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:17,227,058
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 226768 as yet unmatched pairs. 70270 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr19:18,436,762
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 224413 as yet unmatched pairs. 67910 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:19,794,616
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 220727 as yet unmatched pairs. 64222 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:34,219,731
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 218900 as yet unmatched pairs. 62381 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr19:35,250,529
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 216628 as yet unmatched pairs. 60103 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr19:36,116,112
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 213271 as yet unmatched pairs. 56742 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr19:38,380,965
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 209675 as yet unmatched pairs. 53137 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:39,376,771
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 206751 as yet unmatched pairs. 50210 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:40,083,148
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 203547 as yet unmatched pairs. 47006 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:41,292,417
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 201368 as yet unmatched pairs. 44822 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:42,248,344
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 197452 as yet unmatched pairs. 40904 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:42,428,972
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 197714 as yet unmatched pairs. 41157 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:44,893,843
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 191963 as yet unmatched pairs. 35401 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:45,779,317
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 188284 as yet unmatched pairs. 31708 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:47,066,854
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 185403 as yet unmatched pairs. 28824 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:48,626,080
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 182256 as yet unmatched pairs. 25677 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 2s. Last read position: chr19:49,489,852
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 187129 as yet unmatched pairs. 30550 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:49,662,314
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 176303 as yet unmatched pairs. 19718 records in RAM.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:50,943,498
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 172814 as yet unmatched pairs. 16224 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:52,190,148
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 171681 as yet unmatched pairs. 15091 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:54,122,431
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 168178 as yet unmatched pairs. 11580 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:55,083,488
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 164720 as yet unmatched pairs. 8120 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:56,222,246
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 161348 as yet unmatched pairs. 4741 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:57,909,451
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 161377 as yet unmatched pairs. 4767 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr20:499,923
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 157261 as yet unmatched pairs. 41333 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr20:3,696,630
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 153314 as yet unmatched pairs. 37383 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr20:17,641,845
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 151036 as yet unmatched pairs. 35104 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr20:25,278,381
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 148353 as yet unmatched pairs. 32416 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr20:34,077,206
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 145404 as yet unmatched pairs. 29451 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr20:35,654,663
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 142313 as yet unmatched pairs. 26351 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr20:37,228,732
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 140769 as yet unmatched pairs. 24807 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr20:43,609,023
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 136424 as yet unmatched pairs. 20460 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr20:45,963,804
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 133719 as yet unmatched pairs. 17751 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr20:49,184,281
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 130708 as yet unmatched pairs. 14734 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:51,524,018
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 127927 as yet unmatched pairs. 11949 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,622
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 134595 as yet unmatched pairs. 18612 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr20:62,309,457
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 122230 as yet unmatched pairs. 6246 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr20:63,560,638
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 119111 as yet unmatched pairs. 3124 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr21:6,492,181
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 115933 as yet unmatched pairs. 18257 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr21:14,512,485
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 114477 as yet unmatched pairs. 16790 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr21:29,066,758
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 112807 as yet unmatched pairs. 15115 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr21:33,582,174
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 108893 as yet unmatched pairs. 11194 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr21:39,198,860
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 106456 as yet unmatched pairs. 8757 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr21:42,380,164
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 103329 as yet unmatched pairs. 5630 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr21:45,468,332
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 100677 as yet unmatched pairs. 2975 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr22:17,612,857
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 98423 as yet unmatched pairs. 44722 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr22:20,465,474
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 94490 as yet unmatched pairs. 40787 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr22:23,263,121
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 92694 as yet unmatched pairs. 38990 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr22:24,620,495
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 88404 as yet unmatched pairs. 34697 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr22:29,286,930
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 90118 as yet unmatched pairs. 36407 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr22:30,293,928
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 82744 as yet unmatched pairs. 29033 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr22:31,874,294
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 79944 as yet unmatched pairs. 26228 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr22:36,295,699
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 78930 as yet unmatched pairs. 25211 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,686
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 74310 as yet unmatched pairs. 20587 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr22:38,493,752
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 71863 as yet unmatched pairs. 18135 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr22:40,265,545
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 68304 as yet unmatched pairs. 14573 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr22:41,327,349
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 65711 as yet unmatched pairs. 11971 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr22:42,210,650
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 63336 as yet unmatched pairs. 9594 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr22:45,702,740
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 60234 as yet unmatched pairs. 6492 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr22:50,466,013
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 56727 as yet unmatched pairs. 2985 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:2,720,375
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 53531 as yet unmatched pairs. 49437 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chrX:17,727,792
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 50490 as yet unmatched pairs. 46395 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chrX:38,805,447
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 47764 as yet unmatched pairs. 43665 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chrX:45,063,294
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 45228 as yet unmatched pairs. 41128 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chrX:48,906,402
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 42726 as yet unmatched pairs. 38626 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chrX:53,409,178
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 39893 as yet unmatched pairs. 35793 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chrX:53,647,506
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 37995 as yet unmatched pairs. 33891 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:68,047,013
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 34444 as yet unmatched pairs. 30340 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chrX:71,393,338
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 31949 as yet unmatched pairs. 27845 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chrX:77,599,568
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 32452 as yet unmatched pairs. 28348 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chrX:84,468,596
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 26674 as yet unmatched pairs. 22570 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chrX:108,622,678
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 24133 as yet unmatched pairs. 20028 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chrX:119,470,120
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 22299 as yet unmatched pairs. 18194 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chrX:124,094,019
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 19560 as yet unmatched pairs. 15454 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chrX:139,728,848
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 16862 as yet unmatched pairs. 12752 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:152,767,423
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 14016 as yet unmatched pairs. 9904 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chrX:154,016,041
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 11757 as yet unmatched pairs. 7645 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chrX:154,364,667
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 8699 as yet unmatched pairs. 4587 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chrX:154,680,243
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 4909 as yet unmatched pairs. 795 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,755
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 2312 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 630952715 records. 0 pairs never matched.
INFO 2026-06-08 09:01:07 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138248; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:01:07 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:01:10 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:01:10 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:01:30 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 09:01:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,207
INFO 2026-06-08 09:01:30 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:01:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,200
INFO 2026-06-08 09:01:30 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 09:01:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,904
INFO 2026-06-08 09:01:31 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:01:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,488
INFO 2026-06-08 09:01:31 OpticalDuplicateFinder Large duplicate set. size = 1181
INFO 2026-06-08 09:01:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,097
INFO 2026-06-08 09:01:31 OpticalDuplicateFinder Large duplicate set. size = 1818
INFO 2026-06-08 09:01:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,266
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,703
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,061
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1473
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,805
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,920
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1790
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,084
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 3326
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,430
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,433
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,694
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,464
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1284
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,936
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1334
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,398
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,232
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:01:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,954
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder Large duplicate set. size = 2266
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,668
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,572
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,888
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder Large duplicate set. size = 1444
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,716
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:01:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,794
INFO 2026-06-08 09:01:39 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:01:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,229
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,123
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,644
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1735
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,261
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,121
INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 2953
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,814
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,796
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder Large duplicate set. size = 1795
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,143
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,904
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder Large duplicate set. size = 1758
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,071
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,799
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,612
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 09:01:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,611
INFO 2026-06-08 09:02:35 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:02:35 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:03:43 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:03:43 MarkDuplicates After generateDuplicateIndexes freeMemory: 203946352; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:03:43 MarkDuplicates Marking 283088890 records as duplicates.
INFO 2026-06-08 09:03:43 MarkDuplicates Found 26214588 optical duplicate clusters.
INFO 2026-06-08 09:03:43 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:04:00 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:27,551,724
INFO 2026-06-08 09:04:17 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:51,406,019
INFO 2026-06-08 09:04:33 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 15s. Last read position: chr1:109,508,148
INFO 2026-06-08 09:04:48 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 15s. Last read position: chr1:148,953,756
INFO 2026-06-08 09:05:05 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:156,135,196
INFO 2026-06-08 09:05:21 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 15s. Last read position: chr1:186,347,365
INFO 2026-06-08 09:05:37 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:53s. Time for last 10,000,000: 15s. Last read position: chr1:228,323,343
INFO 2026-06-08 09:05:52 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:08s. Time for last 10,000,000: 15s. Last read position: chr2:29,152,717
INFO 2026-06-08 09:06:07 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:24s. Time for last 10,000,000: 15s. Last read position: chr2:53,801,444
INFO 2026-06-08 09:06:24 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:40s. Time for last 10,000,000: 16s. Last read position: chr2:101,004,173
INFO 2026-06-08 09:06:42 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 17s. Last read position: chr2:170,956,528
INFO 2026-06-08 09:06:58 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 15s. Last read position: chr2:215,379,197
INFO 2026-06-08 09:07:13 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:30s. Time for last 10,000,000: 15s. Last read position: chr2:237,377,279
INFO 2026-06-08 09:07:29 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 15s. Last read position: chr3:46,459,792
INFO 2026-06-08 09:07:45 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 15s. Last read position: chr3:119,436,944
INFO 2026-06-08 09:08:01 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 15s. Last read position: chr3:186,786,526
INFO 2026-06-08 09:08:16 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:33s. Time for last 10,000,000: 15s. Last read position: chr4:54,010,080
INFO 2026-06-08 09:08:33 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:49s. Time for last 10,000,000: 16s. Last read position: chr4:168,267,664
INFO 2026-06-08 09:08:49 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 16s. Last read position: chr5:79,641,157
INFO 2026-06-08 09:09:06 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 16s. Last read position: chr5:151,109,768
INFO 2026-06-08 09:09:22 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 15s. Last read position: chr6:26,409,904
INFO 2026-06-08 09:09:37 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 15s. Last read position: chr6:35,087,001
INFO 2026-06-08 09:09:53 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:09s. Time for last 10,000,000: 15s. Last read position: chr6:111,008,068
INFO 2026-06-08 09:10:09 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:25s. Time for last 10,000,000: 15s. Last read position: chr7:2,607,211
INFO 2026-06-08 09:10:25 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 15s. Last read position: chr7:66,241,035
INFO 2026-06-08 09:10:40 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 15s. Last read position: chr7:100,034,138
INFO 2026-06-08 09:10:56 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 15s. Last read position: chr7:137,882,412
INFO 2026-06-08 09:11:12 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 15s. Last read position: chr8:25,340,879
INFO 2026-06-08 09:11:28 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 15s. Last read position: chr8:100,709,133
INFO 2026-06-08 09:11:44 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 16s. Last read position: chr8:143,866,072
INFO 2026-06-08 09:12:01 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 16s. Last read position: chr9:35,740,946
INFO 2026-06-08 09:12:20 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 19s. Last read position: chr9:128,500,720
INFO 2026-06-08 09:12:38 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 17s. Last read position: chr10:28,589,630
INFO 2026-06-08 09:12:56 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:12s. Time for last 10,000,000: 18s. Last read position: chr10:86,943,253
INFO 2026-06-08 09:13:13 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 17s. Last read position: chr11:314,326
INFO 2026-06-08 09:13:31 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 17s. Last read position: chr11:6,603,783
INFO 2026-06-08 09:13:49 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 18s. Last read position: chr11:61,314,313
INFO 2026-06-08 09:14:06 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 17s. Last read position: chr11:71,481,363
INFO 2026-06-08 09:14:26 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:43s. Time for last 10,000,000: 20s. Last read position: chr11:130,141,964
INFO 2026-06-08 09:14:44 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 17s. Last read position: chr12:14,885,736
INFO 2026-06-08 09:15:02 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:18s. Time for last 10,000,000: 18s. Last read position: chr12:56,159,708
INFO 2026-06-08 09:15:25 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 23s. Last read position: chr12:112,964,331
INFO 2026-06-08 09:15:43 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 17s. Last read position: chr13:60,112,172
INFO 2026-06-08 09:16:01 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:17s. Time for last 10,000,000: 17s. Last read position: chr14:63,909,178
INFO 2026-06-08 09:16:18 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:34s. Time for last 10,000,000: 17s. Last read position: chr15:25,781,084
INFO 2026-06-08 09:16:36 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 18s. Last read position: chr15:72,207,220
INFO 2026-06-08 09:16:54 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 17s. Last read position: chr16:4,382,845
INFO 2026-06-08 09:17:11 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 16s. Last read position: chr16:29,464,192
INFO 2026-06-08 09:17:28 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 17s. Last read position: chr16:74,893,685
INFO 2026-06-08 09:17:44 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:00s. Time for last 10,000,000: 16s. Last read position: chr17:16,423,640
INFO 2026-06-08 09:18:00 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 16s. Last read position: chr17:41,867,873
INFO 2026-06-08 09:18:17 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:33s. Time for last 10,000,000: 16s. Last read position: chr17:64,452,853
INFO 2026-06-08 09:18:34 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:50s. Time for last 10,000,000: 17s. Last read position: chr17:81,547,396
INFO 2026-06-08 09:18:52 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:08s. Time for last 10,000,000: 17s. Last read position: chr19:2,151,310
INFO 2026-06-08 09:19:09 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 17s. Last read position: chr19:15,265,595
INFO 2026-06-08 09:19:26 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:42s. Time for last 10,000,000: 17s. Last read position: chr19:41,292,417
INFO 2026-06-08 09:19:44 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:00s. Time for last 10,000,000: 17s. Last read position: chr19:52,190,148
INFO 2026-06-08 09:20:01 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:17s. Time for last 10,000,000: 17s. Last read position: chr20:35,654,663
INFO 2026-06-08 09:20:23 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:39s. Time for last 10,000,000: 21s. Last read position: chr21:14,512,485
INFO 2026-06-08 09:20:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:59s. Time for last 10,000,000: 19s. Last read position: chr22:29,286,930
INFO 2026-06-08 09:21:00 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:16s. Time for last 10,000,000: 17s. Last read position: chr22:50,466,013
INFO 2026-06-08 09:21:17 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:34s. Time for last 10,000,000: 17s. Last read position: chrX:77,599,568
INFO 2026-06-08 09:21:35 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:51s. Time for last 10,000,000: 17s. Last read position: GL000220.1:116,755
INFO 2026-06-08 09:21:45 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:21:45 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:21:45 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:21:45 MarkDuplicates Before output close freeMemory: 203931888; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:21:45 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:21:45 MarkDuplicates After output close freeMemory: 104158904; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:21:45 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.62 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory