File Info

Filename
aih-tih-sc-027d27-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/ff6f471a2567bd706601567e3178a2/aih-tih-sc-027d27-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:34:16
                             Started mapping on |	Jun 08 07:36:36
                                    Finished on |	Jun 08 08:23:34
       Mapping speed, Million of reads per hour |	331.68

                          Number of input reads |	259634172
                      Average input read length |	246
                                    UNIQUE READS:
                   Uniquely mapped reads number |	246513180
                        Uniquely mapped reads % |	94.95%
                          Average mapped length |	245.58
                       Number of splices: Total |	253166779
            Number of splices: Annotated (sjdb) |	249399684
                       Number of splices: GT/AG |	250565561
                       Number of splices: GC/AG |	1891088
                       Number of splices: AT/AC |	212892
               Number of splices: Non-canonical |	497238
                      Mismatch rate per base, % |	0.31%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7918164
             % of reads mapped to multiple loci |	3.05%
        Number of reads mapped to too many loci |	368351
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	470408
       % of reads unmapped: too many mismatches |	0.18%
            Number of reads unmapped: too short |	2532392
                 % of reads unmapped: too short |	0.98%
                Number of reads unmapped: other |	272565
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3372184
                            % of chimeric reads |	1.30%