File Info
- Filename
- aih-tih-sc-60f9b9-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/ad7dfff3ae4dd41ef7da1984a17333/aih-tih-sc-60f9b9-R1_B23WHYVLT4_1.fusions.csv
- Size
- 2.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-60f9b9-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 36,spanning_reads: 0,ffmp: 0.2735 | ||
| SSH2--NF1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:29793894#chr17:31325820,reading-frame: in-frame,type: inversion,split_reads1: 14,split_reads2: 20,discordant_mates: 0,coverage1: 1940,coverage2: 707,confidence: high | position: chr17:29793894:-#chr17:31325820:+,junction_reads: 35,spanning_reads: 0,ffmp: 0.2739 | |
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.0735 | ||
| IGF1R--PHF24 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:98708107:+#chr9:34971295:+,junction_reads: 17,spanning_reads: 0,ffmp: 0.133 | ||
| COL1A1--SLC45A4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:50189867:-#chr8:141254178:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.133 | ||
| MELK--RGS3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr9:36607673#chr9:113479491,reading-frame: out-of-frame,type: deletion,split_reads1: 3,split_reads2: 7,discordant_mates: 0,coverage1: 461,coverage2: 123,confidence: high | position: chr9:36607673:+#chr9:113479491:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0939 | |
| CSDE1--STRIP1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:114757925:-#chr1:110050956:+,junction_reads: 11,spanning_reads: 0,ffmp: 0.0861 | ||
| PRSS27--TPSB2 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr16:2713529:-#chr16:1228814:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0614 | |
| CD58--TNFRSF14-AS1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:116570903#chr1:2550553,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 11,split_reads2: 11,discordant_mates: 0,coverage1: 520,coverage2: 16,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 8,split_reads2: 12,discordant_mates: 1,coverage1: 269,coverage2: 147,confidence: high | |
| ZCCHC4--AC079772.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:25362301#chr4:33760319,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 2,discordant_mates: 0,coverage1: 86,coverage2: 3,confidence: high | ||
| ZCCHC4--AC016687.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:25362301#chr4:33760319,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 2,discordant_mates: 0,coverage1: 86,coverage2: 3,confidence: high |
13 rows