File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2199f01f9f3ba592a6bb8da91897f2/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-0fc41c-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2199f01f9f3ba592a6bb8da91897f2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/ff8728f6edc55091418824f1fd0a8d/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2199f01f9f3ba592a6bb8da91897f2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/4ea539895f224e1427a94ee0e8d7a2/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 219195597
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0fc41c-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	219195597
Known Splicing Events:	216250272
Partial Novel Splicing Events:	1298327
Novel Splicing Events:	1535117
Filtered Splicing Events:	111881

Total splicing  Junctions:	466646
Known Splicing Junctions:	254456
Partial Novel Splicing Junctions:	124435
Novel Splicing Junctions:	87755

===================================================================
Create BED file ...
Create Interact file ...