Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/23356a8adf19c30cba91135025af28/aih-tih-sc-973c73-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/eff1ba177e04933b1f09050ef90869/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/eff1ba177e04933b1f09050ef90869/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/ddb4e355a5290867f2ab1c05d8d7db/aih-tih-sc-973c73-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory