Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/394e2fddc0547598b1da418b634ce2/aih-tih-sc-4dcd88-R1_B23WHYVLT4_1.Chimeric.out.junction Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/dbf3de85aafec578547741c8a36216/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/bf3f8ac39a8567740132945a5aa5b6/aih-tih-sc-4dcd88-R1_B23WHYVLT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/dbf3de85aafec578547741c8a36216/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/bf3f8ac39a8567740132945a5aa5b6/aih-tih-sc-4dcd88-R1_B23WHYVLT4_1_1.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.BRIbmWIzpA/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.BRIbmWIzpA/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.BRIbmWIzpA/./star-fusion.preliminary -sample contains 295357375 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.BRIbmWIzpA/ctat_genome_lib_build_dir -J /tmp/nxf.BRIbmWIzpA/aih-tih-sc-4dcd88-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.BRIbmWIzpA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.BRIbmWIzpA/aih-tih-sc-4dcd88-R1_B23WHYVLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.BRIbmWIzpA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.13 min). -mapping reads to genes [10000], rate=31578.95/min [20000], rate=30000.00/min [30000], rate=30508.47/min [40000], rate=30379.75/min [50000], rate=30927.84/min [60000], rate=31858.41/min [70000], rate=31111.11/min [80000], rate=28235.29/min [90000], rate=27692.31/min [100000], rate=28985.51/min [110000], rate=30136.99/min [120000], rate=30638.30/min [130000], rate=31836.73/min [140000], rate=31939.16/min [150000], rate=32727.27/min [160000], rate=33217.99/min [170000], rate=34113.71/min [180000], rate=34615.38/min [190000], rate=34756.10/min [200000], rate=34782.61/min [210000], rate=34903.05/min [220000], rate=32352.94/min [230000], rate=30131.00/min [240000], rate=29629.63/min [250000], rate=29702.97/min [260000], rate=29942.42/min [270000], rate=30111.52/min [280000], rate=29734.51/min [290000], rate=28292.68/min [300000], rate=27355.62/min [310000], rate=26571.43/min [320000], rate=25945.95/min [330000], rate=25417.20/min [340000], rate=25185.19/min [350000], rate=25485.44/min [360000], rate=25837.32/min [370000], rate=26148.41/min [380000], rate=26450.12/min [390000], rate=26773.46/min [400000], rate=27088.04/min [410000], rate=27424.75/min [420000], rate=27753.30/min [430000], rate=28104.58/min [440000], rate=28478.96/min [450000], rate=28877.01/min [460000], rate=29206.35/min [470000], rate=28982.53/min [480000], rate=28599.80/min [490000], rate=28323.70/min [500000], rate=28011.20/min [510000], rate=27742.52/min [520000], rate=27733.33/min [530000], rate=28067.08/min [540000], rate=28396.14/min [550000], rate=28720.63/min [560000], rate=28915.66/min [570000], rate=29255.77/min [580000], rate=29566.69/min [590000], rate=29898.65/min [600000], rate=30226.70/min [610000], rate=30474.60/min [620000], rate=30794.70/min [630000], rate=31034.48/min [640000], rate=31143.55/min [650000], rate=31125.30/min [660000], rate=31181.10/min [670000], rate=31284.05/min [680000], rate=31288.34/min [690000], rate=30988.02/min [700000], rate=30679.33/min [710000], rate=30341.88/min [720000], rate=30104.53/min [730000], rate=29979.47/min [740000], rate=29919.14/min [750000], rate=29960.05/min [760000], rate=30118.89/min [770000], rate=30255.40/min [780000], rate=30135.22/min [790000], rate=29606.50/min [800000], rate=29232.64/min [810000], rate=28672.57/min [820000], rate=28721.54/min [830000], rate=28836.13/min [840000], rate=28998.85/min [850000], rate=29109.59/min [860000], rate=29218.57/min [870000], rate=28855.72/min [880000], rate=28979.14/min [890000], rate=29116.68/min [900000], rate=29173.42/min [910000], rate=29011.69/min [920000], rate=28855.20/min [930000], rate=28777.72/min [940000], rate=28658.54/min [950000], rate=28542.81/min [960000], rate=28458.50/min [970000], rate=28376.40/min [980000], rate=28296.44/min [990000], rate=28285.71/min [1000000], rate=28436.02/min [1010000], rate=28598.40/min [1020000], rate=28786.45/min [1030000], rate=28959.70/min [1040000], rate=29131.65/min [1050000], rate=29329.61/min [1060000], rate=29499.07/min [1070000], rate=29681.00/min [1080000], rate=29861.75/min [1090000], rate=30041.34/min [1100000], rate=30219.78/min [1110000], rate=30341.69/min [1120000], rate=30366.02/min [1130000], rate=30039.88/min [1140000], rate=30079.16/min [1150000], rate=30131.00/min [1160000], rate=30169.05/min [1170000], rate=30193.55/min [1180000], rate=30230.57/min [1190000], rate=30279.90/min [1200000], rate=30328.56/min [1210000], rate=30376.57/min [1220000], rate=30487.30/min [1230000], rate=30571.67/min [1240000], rate=30642.50/min [1250000], rate=30537.46/min [1260000], rate=30447.04/min [1270000], rate=30528.85/min [1280000], rate=30634.22/min [1290000], rate=30750.89/min [1300000], rate=30866.64/min [1310000], rate=30969.27/min [1320000], rate=31046.65/min [1330000], rate=31147.54/min [1340000], rate=31259.72/min [1350000], rate=31346.75/min [1360000], rate=31432.97/min [1370000], rate=31542.59/min [1380000], rate=31639.28/min [1390000], rate=31723.09/min [1400000], rate=31818.18/min [1410000], rate=31900.45/min [1420000], rate=31969.98/min [1430000], rate=31895.91/min [1440000], rate=31988.15/min [1450000], rate=32091.48/min [1460000], rate=32205.88/min [1470000], rate=32236.84/min [1480000], rate=32185.57/min [1490000], rate=32123.61/min [1500000], rate=32051.28/min [1510000], rate=32014.13/min [1520000], rate=32022.47/min [1530000], rate=32120.36/min [1540000], rate=32217.57/min [1550000], rate=32359.08/min [1560000], rate=32500.00/min [1570000], rate=32629.03/min [1580000], rate=32757.43/min [1590000], rate=32873.88/min [1600000], rate=32989.69/min [1610000], rate=33116.22/min [1620000], rate=33253.51/min [1630000], rate=33378.84/min [1640000], rate=33492.17/min [1650000], rate=33616.30/min [1660000], rate=33739.84/min [1670000], rate=33794.27/min [1680000], rate=33432.84/min [1690000], rate=33213.23/min [1700000], rate=33257.25/min [1710000], rate=33300.88/min [1720000], rate=33354.88/min [1730000], rate=33419.19/min [1740000], rate=33483.00/min [1750000], rate=33535.61/min [1760000], rate=33598.47/min [1770000], rate=33671.53/min [1780000], rate=33733.42/min [1790000], rate=33805.48/min [1800000], rate=33877.04/min [1810000], rate=33958.72/min [1820000], rate=34039.90/min [1830000], rate=34131.18/min [1840000], rate=34221.95/min [1850000], rate=34301.61/min [1860000], rate=34370.19/min [1870000], rate=34459.46/min [1880000], rate=34548.24/min [1890000], rate=34657.70/min [1900000], rate=34756.10/min [1910000], rate=34885.84/min [1920000], rate=34983.30/min [1930000], rate=35112.19/min [1940000], rate=35240.69/min [1950000], rate=35326.09/min [1960000], rate=35443.04/min [1970000], rate=35570.27/min [1980000], rate=35686.39/min [1990000], rate=35812.84/min [2000000], rate=35917.39/min [2010000], rate=36021.51/min [2020000], rate=36114.42/min [2030000], rate=36217.66/min [2040000], rate=36320.47/min [2050000], rate=36412.08/min [2060000], rate=36470.94/min [2070000], rate=36497.21/min [2080000], rate=36523.27/min [2090000], rate=36549.11/min [2100000], rate=36574.75/min [2110000], rate=36600.17/min [2120000], rate=36635.94/min [2130000], rate=36671.45/min [2140000], rate=36706.69/min [2150000], rate=36762.61/min [2160000], rate=36807.73/min [2170000], rate=36873.41/min [2180000], rate=36917.87/min [2190000], rate=36972.43/min [2200000], rate=37037.04/min [2210000], rate=37101.29/min [2220000], rate=37175.55/min [2230000], rate=37239.08/min [2240000], rate=37291.90/min [2250000], rate=37365.07/min [2260000], rate=37437.88/min [2270000], rate=37479.36/min [2280000], rate=37551.47/min [2290000], rate=37623.22/min [2300000], rate=37704.92/min [2310000], rate=37786.26/min [2320000], rate=37867.25/min [2330000], rate=37947.88/min [2340000], rate=38028.17/min [2350000], rate=38108.11/min [2360000], rate=38187.70/min [2370000], rate=38277.25/min [2380000], rate=38356.16/min [2390000], rate=38434.74/min [2400000], rate=38461.54/min [2410000], rate=38488.16/min [2420000], rate=38514.59/min [2430000], rate=38540.84/min [2440000], rate=38587.24/min [2450000], rate=38613.08/min [2460000], rate=38648.86/min [2470000], rate=38694.52/min [2480000], rate=38739.91/min [2490000], rate=38795.12/min [2500000], rate=38850.04/min [2510000], rate=38904.68/min [2520000], rate=38959.03/min [2530000], rate=39023.14/min [2540000], rate=39066.91/min [2550000], rate=39140.45/min [2560000], rate=39203.68/min [2570000], rate=39266.62/min [2580000], rate=39339.26/min [2590000], rate=39411.62/min [2600000], rate=39493.67/min [2610000], rate=39575.44/min [2620000], rate=39656.91/min [2630000], rate=39738.10/min [2640000], rate=39819.00/min [2650000], rate=39899.62/min [2660000], rate=39979.96/min [2670000], rate=40039.99/min