Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/6d6d2e5e8df47cf91d635e5d5ba0b9/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/6d6d2e5e8df47cf91d635e5d5ba0b9/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/5da4b0f0dc5b55b097fe818cf33f1e/aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3924cb-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-3924cb-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:40:14.825 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:40:14 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3924cb-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-3924cb-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:40:14 GMT 2026] Executing as ?@nf-516d6d2e5e8df47cf91d635e5d5ba0b9-227b5-vjhzd on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:40:14 MarkDuplicates Start of doWork freeMemory: 105828760; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:40:14 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:40:14 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:40:19 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,460,892 INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 3289 as yet unmatched pairs. 93 records in RAM. INFO 2026-06-08 08:40:22 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:6,136,816 INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 6283 as yet unmatched pairs. 22 records in RAM. INFO 2026-06-08 08:40:24 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:8,624,356 INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 9762 as yet unmatched pairs. 537 records in RAM. INFO 2026-06-08 08:40:26 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,243,113 INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 12195 as yet unmatched pairs. 121 records in RAM. INFO 2026-06-08 08:40:28 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,719,870 INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 15227 as yet unmatched pairs. 368 records in RAM. INFO 2026-06-08 08:40:31 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:17,438,263 INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 17471 as yet unmatched pairs. 61 records in RAM. INFO 2026-06-08 08:40:33 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:20,776,614 INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 20642 as yet unmatched pairs. 302 records in RAM. INFO 2026-06-08 08:40:34 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:21,884,804 INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 23972 as yet unmatched pairs. 562 records in RAM. INFO 2026-06-08 08:40:37 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:23,961,659 INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 26285 as yet unmatched pairs. 158 records in RAM. INFO 2026-06-08 08:40:39 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:27,102,672 INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 28953 as yet unmatched pairs. 159 records in RAM. INFO 2026-06-08 08:40:41 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:31,425,870 INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 32326 as yet unmatched pairs. 792 records in RAM. INFO 2026-06-08 08:40:44 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:33,024,536 INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 34726 as yet unmatched pairs. 210 records in RAM. INFO 2026-06-08 08:40:46 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:38,839,690 INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 37571 as yet unmatched pairs. 166 records in RAM. INFO 2026-06-08 08:40:47 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:42,683,402 INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 40805 as yet unmatched pairs. 698 records in RAM. INFO 2026-06-08 08:40:50 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:45,514,561 INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 44684 as yet unmatched pairs. 1634 records in RAM. INFO 2026-06-08 08:40:52 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:47,219,256 INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 45840 as yet unmatched pairs. 96 records in RAM. INFO 2026-06-08 08:40:54 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:53,828,022 INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 48977 as yet unmatched pairs. 347 records in RAM. INFO 2026-06-08 08:40:56 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:62,114,188 INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 51679 as yet unmatched pairs. 172 records in RAM. INFO 2026-06-08 08:40:57 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:77,154,512 INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 54391 as yet unmatched pairs. 458 records in RAM. INFO 2026-06-08 08:40:59 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:86,432,377 INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 57440 as yet unmatched pairs. 865 records in RAM. INFO 2026-06-08 08:41:00 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:93,156,407 INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 60478 as yet unmatched pairs. 1461 records in RAM. INFO 2026-06-08 08:41:03 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:100,992,613 INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 61738 as yet unmatched pairs. 168 records in RAM. INFO 2026-06-08 08:41:05 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:109,191,791 INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 65669 as yet unmatched pairs. 1466 records in RAM. INFO 2026-06-08 08:41:07 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:110,346,298 INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 67486 as yet unmatched pairs. 472 records in RAM. INFO 2026-06-08 08:41:08 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:113,642,340 INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 72102 as yet unmatched pairs. 2517 records in RAM. INFO 2026-06-08 08:41:10 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:114,510,555 INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 73257 as yet unmatched pairs. 1174 records in RAM. INFO 2026-06-08 08:41:11 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,450 INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 77694 as yet unmatched pairs. 2878 records in RAM. INFO 2026-06-08 08:41:13 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:119,950,680 INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 80272 as yet unmatched pairs. 2828 records in RAM. INFO 2026-06-08 08:41:14 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:121,366,696 INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 79477 as yet unmatched pairs. 111 records in RAM. INFO 2026-06-08 08:41:16 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:146,078,241 INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 81725 as yet unmatched pairs. 607 records in RAM. INFO 2026-06-08 08:41:18 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:147,186,886 INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 82880 as yet unmatched pairs. 783 records in RAM. INFO 2026-06-08 08:41:19 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:148,564,553 INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 84296 as yet unmatched pairs. 923 records in RAM. INFO 2026-06-08 08:41:21 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,348 INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 88246 as yet unmatched pairs. 3695 records in RAM. INFO 2026-06-08 08:41:23 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:149,842,471 INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 90241 as yet unmatched pairs. 3955 records in RAM. INFO 2026-06-08 08:41:24 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:149,959,775 INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 88451 as yet unmatched pairs. 331 records in RAM. INFO 2026-06-08 08:41:26 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,509,707 INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 105760 as yet unmatched pairs. 15201 records in RAM. INFO 2026-06-08 08:41:29 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:150,511,584 INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 95254 as yet unmatched pairs. 2222 records in RAM. INFO 2026-06-08 08:41:30 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:150,627,554 INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 99452 as yet unmatched pairs. 3881 records in RAM. INFO 2026-06-08 08:41:32 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:151,055,677 INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 99486 as yet unmatched pairs. 1239 records in RAM. INFO 2026-06-08 08:41:34 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:151,411,701 INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 102428 as yet unmatched pairs. 1378 records in RAM. INFO 2026-06-08 08:41:36 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:153,948,094 INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 103893 as yet unmatched pairs. 274 records in RAM. INFO 2026-06-08 08:41:38 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,014 INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 109354 as yet unmatched pairs. 3185 records in RAM. INFO 2026-06-08 08:41:39 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:154,966,200 INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 109523 as yet unmatched pairs. 752 records in RAM. INFO 2026-06-08 08:41:41 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,172,743 INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 114617 as yet unmatched pairs. 2999 records in RAM. INFO 2026-06-08 08:41:43 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:155,188,021 INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 121051 as yet unmatched pairs. 6609 records in RAM. INFO 2026-06-08 08:41:44 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,054 INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 118395 as yet unmatched pairs. 2203 records in RAM. INFO 2026-06-08 08:41:46 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:155,192,064 INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 132760 as yet unmatched pairs. 14933 records in RAM. INFO 2026-06-08 08:41:48 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:155,253,931 INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 120808 as yet unmatched pairs. 702 records in RAM. INFO 2026-06-08 08:41:50 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:155,479,010 INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 124413 as yet unmatched pairs. 1573 records in RAM. INFO 2026-06-08 08:41:53 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:155,721,516 INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 127817 as yet unmatched pairs. 2649 records in RAM. INFO 2026-06-08 08:41:54 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:156,114,953 INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 128524 as yet unmatched pairs. 679 records in RAM. INFO 2026-06-08 08:41:56 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:156,469,003 INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 131462 as yet unmatched pairs. 363 records in RAM. INFO 2026-06-08 08:41:58 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:159,049,576 INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 133983 as yet unmatched pairs. 313 records in RAM. INFO 2026-06-08 08:41:59 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:161,089,283 INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 136631 as yet unmatched pairs. 123 records in RAM. INFO 2026-06-08 08:42:02 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:162,365,547 INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 139503 as yet unmatched pairs. 397 records in RAM. INFO 2026-06-08 08:42:03 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:165,662,995 INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 143383 as yet unmatched pairs. 1622 records in RAM. INFO 2026-06-08 08:42:05 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,277 INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 149090 as yet unmatched pairs. 4426 records in RAM. INFO 2026-06-08 08:42:07 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:171,579,393 INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 147976 as yet unmatched pairs. 890 records in RAM. INFO 2026-06-08 08:42:08 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:178,457,805 INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 150212 as yet unmatched pairs. 498 records in RAM. INFO 2026-06-08 08:42:10 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:180,092,762 INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 152550 as yet unmatched pairs. 342 records in RAM. INFO 2026-06-08 08:42:12 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:182,876,500 INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 155791 as yet unmatched pairs. 819 records in RAM. INFO 2026-06-08 08:42:14 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:186,318,577 INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 159785 as yet unmatched pairs. 2225 records in RAM. INFO 2026-06-08 08:42:16 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:186,356,301 INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 162634 as yet unmatched pairs. 2854 records in RAM. INFO 2026-06-08 08:42:18 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:197,645,706 INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 163706 as yet unmatched pairs. 1591 records in RAM. INFO 2026-06-08 08:42:20 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr1:201,848,462 INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 165927 as yet unmatched pairs. 1102 records in RAM. INFO 2026-06-08 08:42:22 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr1:202,766,925 INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 168208 as yet unmatched pairs. 578 records in RAM. INFO 2026-06-08 08:42:24 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:203,708,005 INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 170795 as yet unmatched pairs. 538 records in RAM. INFO 2026-06-08 08:42:26 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:203,849,790 INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 175550 as yet unmatched pairs. 2990 records in RAM. INFO 2026-06-08 08:42:28 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr1:204,410,955 INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 176757 as yet unmatched pairs. 1408 records in RAM. INFO 2026-06-08 08:42:30 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr1:205,723,963 INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 184576 as yet unmatched pairs. 6826 records in RAM. INFO 2026-06-08 08:42:32 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr1:207,340,519 INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 181924 as yet unmatched pairs. 1608 records in RAM. INFO 2026-06-08 08:42:33 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr1:207,887,414 INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 183530 as yet unmatched pairs. 479 records in RAM. INFO 2026-06-08 08:42:35 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr1:214,334,252 INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 185926 as yet unmatched pairs. 223 records in RAM. INFO 2026-06-08 08:42:37 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr1:222,665,331 INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 188408 as yet unmatched pairs. 253 records in RAM. INFO 2026-06-08 08:42:38 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr1:225,517,912 INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 191215 as yet unmatched pairs. 404 records in RAM. INFO 2026-06-08 08:42:40 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr1:228,271,933 INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 193706 as yet unmatched pairs. 127 records in RAM. INFO 2026-06-08 08:42:43 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr1:234,607,118 INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 197864 as yet unmatched pairs. 1304 records in RAM. INFO 2026-06-08 08:42:46 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr1:241,885,318 INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 199454 as yet unmatched pairs. 37 records in RAM. INFO 2026-06-08 08:42:48 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr1:247,434,110 INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 201930 as yet unmatched pairs. 24 records in RAM. INFO 2026-06-08 08:42:51 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 3s. Last read position: chr2:10,789,751 INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 205288 as yet unmatched pairs. 203398 records in RAM. INFO 2026-06-08 08:42:53 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:20,263,336 INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 207924 as yet unmatched pairs. 205995 records in RAM. INFO 2026-06-08 08:42:55 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:24,790,379 INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 210420 as yet unmatched pairs. 208459 records in RAM. INFO 2026-06-08 08:42:57 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:27,312,983 INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 213891 as yet unmatched pairs. 211894 records in RAM. INFO 2026-06-08 08:42:59 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:32,029,657 INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 216817 as yet unmatched pairs. 214792 records in RAM. INFO 2026-06-08 08:43:00 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,259 INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 297392 as yet unmatched pairs. 209475 records in RAM. INFO 2026-06-08 08:43:02 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 714731 as yet unmatched pairs. 180286 records in RAM. INFO 2026-06-08 08:43:04 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,360 INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1265523 as yet unmatched pairs. 140896 records in RAM. INFO 2026-06-08 08:43:06 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1356995 as yet unmatched pairs. 134084 records in RAM. INFO 2026-06-08 08:43:07 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,430 INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 1435588 as yet unmatched pairs. 128569 records in RAM. INFO 2026-06-08 08:43:09 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:39,265,233 INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 1444653 as yet unmatched pairs. 125817 records in RAM. INFO 2026-06-08 08:43:10 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:43,995,827 INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1441986 as yet unmatched pairs. 123125 records in RAM. INFO 2026-06-08 08:43:13 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:54,115,607 INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 1439325 as yet unmatched pairs. 120435 records in RAM. INFO 2026-06-08 08:43:14 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:58,221,999 INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 1436985 as yet unmatched pairs. 118063 records in RAM. INFO 2026-06-08 08:43:17 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:65,098,011 INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 1435468 as yet unmatched pairs. 116521 records in RAM. INFO 2026-06-08 08:43:19 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:70,820,463 INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 1431737 as yet unmatched pairs. 112765 records in RAM. INFO 2026-06-08 08:43:21 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:74,365,231 INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 1429120 as yet unmatched pairs. 110133 records in RAM. INFO 2026-06-08 08:43:23 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:85,401,550 INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 1427224 as yet unmatched pairs. 108221 records in RAM. INFO 2026-06-08 08:43:24 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,483 INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 1425425 as yet unmatched pairs. 106399 records in RAM. INFO 2026-06-08 08:43:26 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:96,865,460 INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 1422009 as yet unmatched pairs. 102958 records in RAM. INFO 2026-06-08 08:43:28 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:99,727,091 INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 1420270 as yet unmatched pairs. 101193 records in RAM. INFO 2026-06-08 08:43:30 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:108,749,102 INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 1417980 as yet unmatched pairs. 98879 records in RAM. INFO 2026-06-08 08:43:31 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:111,783,950 INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 1415186 as yet unmatched pairs. 96081 records in RAM. INFO 2026-06-08 08:43:33 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:119,437,274 INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 1413101 as yet unmatched pairs. 93979 records in RAM. INFO 2026-06-08 08:43:34 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:130,115,298 INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 1410917 as yet unmatched pairs. 91759 records in RAM. INFO 2026-06-08 08:43:36 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:130,638,667 INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 1409792 as yet unmatched pairs. 90606 records in RAM. INFO 2026-06-08 08:43:37 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:131,531,670 INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1408044 as yet unmatched pairs. 88834 records in RAM. INFO 2026-06-08 08:43:40 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:144,007,512 INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 1405644 as yet unmatched pairs. 86366 records in RAM. INFO 2026-06-08 08:43:42 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:159,230,210 INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 1403275 as yet unmatched pairs. 83955 records in RAM. INFO 2026-06-08 08:43:44 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:169,156,391 INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 1402582 as yet unmatched pairs. 83236 records in RAM. INFO 2026-06-08 08:43:46 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:170,996,656 INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 1398778 as yet unmatched pairs. 79407 records in RAM. INFO 2026-06-08 08:43:48 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:176,328,344 INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 1396276 as yet unmatched pairs. 76860 records in RAM. INFO 2026-06-08 08:43:50 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:182,759,159 INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 1394412 as yet unmatched pairs. 74965 records in RAM. INFO 2026-06-08 08:43:51 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:188,994,237 INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 1394559 as yet unmatched pairs. 75089 records in RAM. INFO 2026-06-08 08:43:53 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:189,035,114 INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 1390226 as yet unmatched pairs. 70728 records in RAM. INFO 2026-06-08 08:43:55 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:195,680,039 INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1385416 as yet unmatched pairs. 65876 records in RAM. INFO 2026-06-08 08:43:57 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:201,380,818 INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1382979 as yet unmatched pairs. 63416 records in RAM. INFO 2026-06-08 08:43:59 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:207,567,459 INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 1382568 as yet unmatched pairs. 62996 records in RAM. INFO 2026-06-08 08:44:00 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:212,124,767 INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 1380925 as yet unmatched pairs. 61331 records in RAM. INFO 2026-06-08 08:44:02 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,624 INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1403492 as yet unmatched pairs. 83857 records in RAM. INFO 2026-06-08 08:44:04 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,343 INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1403152 as yet unmatched pairs. 83498 records in RAM. INFO 2026-06-08 08:44:06 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,173 INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1414419 as yet unmatched pairs. 94762 records in RAM. INFO 2026-06-08 08:44:07 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,280 INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1388508 as yet unmatched pairs. 68849 records in RAM. INFO 2026-06-08 08:44:09 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,600 INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1391449 as yet unmatched pairs. 71767 records in RAM. INFO 2026-06-08 08:44:11 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,296 INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1402524 as yet unmatched pairs. 82841 records in RAM. INFO 2026-06-08 08:44:13 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,859 INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1373165 as yet unmatched pairs. 53479 records in RAM. INFO 2026-06-08 08:44:15 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,651 INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 1382462 as yet unmatched pairs. 62767 records in RAM. INFO 2026-06-08 08:44:17 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,222 INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1380075 as yet unmatched pairs. 60376 records in RAM. INFO 2026-06-08 08:44:18 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,255 INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 1374695 as yet unmatched pairs. 54986 records in RAM. INFO 2026-06-08 08:44:20 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,302 INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 1374356 as yet unmatched pairs. 54633 records in RAM. INFO 2026-06-08 08:44:22 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr2:215,414,837 INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1362251 as yet unmatched pairs. 42504 records in RAM. INFO 2026-06-08 08:44:24 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,397 INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1357171 as yet unmatched pairs. 37423 records in RAM. INFO 2026-06-08 08:44:25 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,322 INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 1364712 as yet unmatched pairs. 44945 records in RAM. INFO 2026-06-08 08:44:27 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr2:216,116,755 INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 1342088 as yet unmatched pairs. 22288 records in RAM. INFO 2026-06-08 08:44:29 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr2:218,075,190 INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 1337751 as yet unmatched pairs. 17923 records in RAM. INFO 2026-06-08 08:44:30 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr2:219,543,411 INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1334991 as yet unmatched pairs. 15139 records in RAM. INFO 2026-06-08 08:44:32 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr2:230,359,015 INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1332332 as yet unmatched pairs. 12451 records in RAM. INFO 2026-06-08 08:44:34 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr2:233,204,373 INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1329654 as yet unmatched pairs. 9750 records in RAM. INFO 2026-06-08 08:44:36 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr2:237,365,771 INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1327233 as yet unmatched pairs. 7306 records in RAM. INFO 2026-06-08 08:44:38 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr2:237,762,950 INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 1324950 as yet unmatched pairs. 5003 records in RAM. INFO 2026-06-08 08:44:40 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr2:241,256,693 INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 1322000 as yet unmatched pairs. 2026 records in RAM. INFO 2026-06-08 08:44:43 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:9,435,763 INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1318516 as yet unmatched pairs. 74541 records in RAM. INFO 2026-06-08 08:44:44 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:12,606,264 INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1318486 as yet unmatched pairs. 74491 records in RAM. INFO 2026-06-08 08:44:46 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:17,372,093 INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 1313033 as yet unmatched pairs. 69011 records in RAM. INFO 2026-06-08 08:44:48 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:33,124,477 INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1310649 as yet unmatched pairs. 66585 records in RAM. INFO 2026-06-08 08:44:50 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:39,394,501 INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1307660 as yet unmatched pairs. 63557 records in RAM. INFO 2026-06-08 08:44:51 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:43,347,378 INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1304921 as yet unmatched pairs. 60809 records in RAM. INFO 2026-06-08 08:44:53 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:47,406,502 INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1302201 as yet unmatched pairs. 58059 records in RAM. INFO 2026-06-08 08:44:55 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:48,501,174 INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 1299827 as yet unmatched pairs. 55668 records in RAM. INFO 2026-06-08 08:44:56 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:49,117,975 INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1296396 as yet unmatched pairs. 52216 records in RAM. INFO 2026-06-08 08:44:58 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:49,683,273 INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 1293441 as yet unmatched pairs. 49214 records in RAM. INFO 2026-06-08 08:45:00 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr3:51,387,752 INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1290637 as yet unmatched pairs. 46378 records in RAM. INFO 2026-06-08 08:45:02 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr3:52,548,105 INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1287730 as yet unmatched pairs. 43449 records in RAM. INFO 2026-06-08 08:45:03 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:58,081,690 INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1285519 as yet unmatched pairs. 41229 records in RAM. INFO 2026-06-08 08:45:05 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr3:65,356,498 INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1282488 as yet unmatched pairs. 38164 records in RAM. INFO 2026-06-08 08:45:07 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr3:94,056,275 INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 1279803 as yet unmatched pairs. 35452 records in RAM. INFO 2026-06-08 08:45:10 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr3:101,821,564 INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1277410 as yet unmatched pairs. 33035 records in RAM. INFO 2026-06-08 08:45:12 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr3:113,626,190 INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1275191 as yet unmatched pairs. 30782 records in RAM. INFO 2026-06-08 08:45:14 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr3:121,698,652 INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 1272923 as yet unmatched pairs. 28447 records in RAM. INFO 2026-06-08 08:45:16 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr3:125,279,213 INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1270317 as yet unmatched pairs. 25825 records in RAM. INFO 2026-06-08 08:45:17 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr3:129,268,505 INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1267015 as yet unmatched pairs. 22487 records in RAM. INFO 2026-06-08 08:45:19 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr3:134,371,144 INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1264203 as yet unmatched pairs. 19646 records in RAM. INFO 2026-06-08 08:45:21 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr3:142,356,909 INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1261862 as yet unmatched pairs. 17261 records in RAM. INFO 2026-06-08 08:45:23 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr3:150,583,265 INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1259481 as yet unmatched pairs. 14858 records in RAM. INFO 2026-06-08 08:45:25 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr3:168,032,636 INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1256689 as yet unmatched pairs. 12030 records in RAM. INFO 2026-06-08 08:45:27 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr3:179,401,250 INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 1254495 as yet unmatched pairs. 9799 records in RAM. INFO 2026-06-08 08:45:29 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr3:184,322,023 INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 1251617 as yet unmatched pairs. 6895 records in RAM. INFO 2026-06-08 08:45:30 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,320 INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1250147 as yet unmatched pairs. 5398 records in RAM. INFO 2026-06-08 08:45:32 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr3:196,239,706 INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1246334 as yet unmatched pairs. 1548 records in RAM. INFO 2026-06-08 08:45:34 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr4:987,808 INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1243604 as yet unmatched pairs. 47506 records in RAM. INFO 2026-06-08 08:45:36 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr4:2,663,246 INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1240656 as yet unmatched pairs. 44516 records in RAM. INFO 2026-06-08 08:45:37 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr4:6,861,981 INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 1237245 as yet unmatched pairs. 41080 records in RAM. INFO 2026-06-08 08:45:39 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr4:16,176,186 INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1234677 as yet unmatched pairs. 38476 records in RAM. INFO 2026-06-08 08:45:41 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr4:39,467,549 INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 1231765 as yet unmatched pairs. 35532 records in RAM. INFO 2026-06-08 08:45:43 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr4:48,857,227 INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 1229678 as yet unmatched pairs. 33407 records in RAM. INFO 2026-06-08 08:45:45 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr4:57,031,144 INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1228087 as yet unmatched pairs. 31797 records in RAM. INFO 2026-06-08 08:45:47 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr4:75,914,907 INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 1224032 as yet unmatched pairs. 27689 records in RAM. INFO 2026-06-08 08:45:49 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr4:82,427,206 INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 1221769 as yet unmatched pairs. 25401 records in RAM. INFO 2026-06-08 08:45:50 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr4:87,422,988 INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1218894 as yet unmatched pairs. 22505 records in RAM. INFO 2026-06-08 08:45:52 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr4:95,154,812 INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 1220927 as yet unmatched pairs. 24521 records in RAM. INFO 2026-06-08 08:45:54 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr4:104,491,836 INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1214087 as yet unmatched pairs. 17657 records in RAM. INFO 2026-06-08 08:45:56 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:112,560,850 INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1211444 as yet unmatched pairs. 14997 records in RAM. INFO 2026-06-08 08:45:57 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr4:122,239,907 INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1209160 as yet unmatched pairs. 12666 records in RAM. INFO 2026-06-08 08:45:59 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr4:140,622,632 INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 1207443 as yet unmatched pairs. 10910 records in RAM. INFO 2026-06-08 08:46:01 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr4:149,986,915 INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 1204013 as yet unmatched pairs. 7428 records in RAM. INFO 2026-06-08 08:46:04 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr4:153,788,407 INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 1206170 as yet unmatched pairs. 9565 records in RAM. INFO 2026-06-08 08:46:06 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr4:173,207,429 INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1199326 as yet unmatched pairs. 2695 records in RAM. INFO 2026-06-08 08:46:08 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr5:462,202 INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1196271 as yet unmatched pairs. 74610 records in RAM. INFO 2026-06-08 08:46:10 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:14,330,789 INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1193766 as yet unmatched pairs. 72091 records in RAM. INFO 2026-06-08 08:46:12 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:21,491,476 INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1190641 as yet unmatched pairs. 68934 records in RAM. INFO 2026-06-08 08:46:13 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:35,089,599 INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 1188862 as yet unmatched pairs. 67134 records in RAM. INFO 2026-06-08 08:46:15 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:42,800,722 INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1187257 as yet unmatched pairs. 65515 records in RAM. INFO 2026-06-08 08:46:17 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:55,951,508 INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1186950 as yet unmatched pairs. 65173 records in RAM. INFO 2026-06-08 08:46:19 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:65,542,823 INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 1181221 as yet unmatched pairs. 59437 records in RAM. INFO 2026-06-08 08:46:21 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:69,590,354 INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1178741 as yet unmatched pairs. 56947 records in RAM. INFO 2026-06-08 08:46:22 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:71,035,713 INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 1179876 as yet unmatched pairs. 58067 records in RAM. INFO 2026-06-08 08:46:24 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:74,720,698 INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 1175829 as yet unmatched pairs. 54003 records in RAM. INFO 2026-06-08 08:46:25 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:81,420,398 INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 1174027 as yet unmatched pairs. 52171 records in RAM. INFO 2026-06-08 08:46:27 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:87,363,386 INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 1170971 as yet unmatched pairs. 49103 records in RAM. INFO 2026-06-08 08:46:29 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:98,894,655 INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 1168438 as yet unmatched pairs. 46508 records in RAM. INFO 2026-06-08 08:46:31 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:115,870,100 INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1166259 as yet unmatched pairs. 44307 records in RAM. INFO 2026-06-08 08:46:32 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:131,435,938 INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 1163433 as yet unmatched pairs. 41459 records in RAM. INFO 2026-06-08 08:46:34 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr5:134,609,610 INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 1161221 as yet unmatched pairs. 39228 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:138,567,117 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1158819 as yet unmatched pairs. 36809 records in RAM. INFO 2026-06-08 08:46:38 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:140,632,617 INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1155463 as yet unmatched pairs. 33428 records in RAM. INFO 2026-06-08 08:46:39 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr5:143,400,101 INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 1152804 as yet unmatched pairs. 30748 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr5:150,120,915 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 1152943 as yet unmatched pairs. 30870 records in RAM. INFO 2026-06-08 08:46:43 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,209 INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1189635 as yet unmatched pairs. 67546 records in RAM. INFO 2026-06-08 08:46:45 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,122 INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1170835 as yet unmatched pairs. 48733 records in RAM. INFO 2026-06-08 08:46:46 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,460 INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 1140826 as yet unmatched pairs. 18712 records in RAM. INFO 2026-06-08 08:46:48 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr5:154,033,861 INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1137844 as yet unmatched pairs. 15711 records in RAM. INFO 2026-06-08 08:46:50 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr5:169,803,104 INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 1135166 as yet unmatched pairs. 13014 records in RAM. INFO 2026-06-08 08:46:52 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr5:171,410,662 INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 1134342 as yet unmatched pairs. 12172 records in RAM. INFO 2026-06-08 08:46:55 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr5:176,969,549 INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 1130624 as yet unmatched pairs. 8426 records in RAM. INFO 2026-06-08 08:46:57 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr5:179,313,823 INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1127340 as yet unmatched pairs. 5130 records in RAM. INFO 2026-06-08 08:46:58 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,606 INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 1128759 as yet unmatched pairs. 6538 records in RAM. INFO 2026-06-08 08:47:01 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr6:2,948,269 INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 1121940 as yet unmatched pairs. 71960 records in RAM. INFO 2026-06-08 08:47:02 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:7,240,360 INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1119998 as yet unmatched pairs. 69997 records in RAM. INFO 2026-06-08 08:47:04 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:13,632,382 INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1116828 as yet unmatched pairs. 66813 records in RAM. INFO 2026-06-08 08:47:06 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:25,966,468 INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 1114047 as yet unmatched pairs. 63994 records in RAM. INFO 2026-06-08 08:47:07 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:27,814,375 INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 1112201 as yet unmatched pairs. 62136 records in RAM. INFO 2026-06-08 08:47:09 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:30,604,199 INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1108795 as yet unmatched pairs. 58724 records in RAM. INFO 2026-06-08 08:47:11 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,704 INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 1106182 as yet unmatched pairs. 56096 records in RAM. INFO 2026-06-08 08:47:13 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:31,791,718 INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 1103167 as yet unmatched pairs. 53067 records in RAM. INFO 2026-06-08 08:47:14 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:31,948,390 INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 1101575 as yet unmatched pairs. 51471 records in RAM. INFO 2026-06-08 08:47:16 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr6:32,442,447 INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 1099540 as yet unmatched pairs. 49422 records in RAM. INFO 2026-06-08 08:47:18 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr6:33,287,639 INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 1096062 as yet unmatched pairs. 45942 records in RAM. INFO 2026-06-08 08:47:20 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:34,341,905 INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 1093524 as yet unmatched pairs. 43392 records in RAM. INFO 2026-06-08 08:47:22 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:36,968,899 INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 1092516 as yet unmatched pairs. 42363 records in RAM. INFO 2026-06-08 08:47:23 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:43,009,085 INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 1087857 as yet unmatched pairs. 37672 records in RAM. INFO 2026-06-08 08:47:25 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:44,247,159 INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 1085994 as yet unmatched pairs. 35792 records in RAM. INFO 2026-06-08 08:47:27 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:53,013,702 INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 1082535 as yet unmatched pairs. 32261 records in RAM. INFO 2026-06-08 08:47:29 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr6:63,691,884 INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 1080103 as yet unmatched pairs. 29809 records in RAM. INFO 2026-06-08 08:47:30 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:75,165,524 INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 1080258 as yet unmatched pairs. 29946 records in RAM. INFO 2026-06-08 08:47:32 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:87,218,635 INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 1075032 as yet unmatched pairs. 24706 records in RAM. INFO 2026-06-08 08:47:33 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr6:108,214,611 INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 1072548 as yet unmatched pairs. 22217 records in RAM. INFO 2026-06-08 08:47:35 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr6:116,692,052 INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 1069865 as yet unmatched pairs. 19530 records in RAM. INFO 2026-06-08 08:47:37 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr6:132,816,536 INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 1067774 as yet unmatched pairs. 17426 records in RAM. INFO 2026-06-08 08:47:39 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr6:138,905,034 INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 1064645 as yet unmatched pairs. 14278 records in RAM. INFO 2026-06-08 08:47:40 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr6:151,350,718 INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 1062002 as yet unmatched pairs. 11622 records in RAM. INFO 2026-06-08 08:47:42 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr6:152,011,653 INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 1063747 as yet unmatched pairs. 13324 records in RAM. INFO 2026-06-08 08:47:43 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:158,767,323 INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 1060095 as yet unmatched pairs. 9655 records in RAM. INFO 2026-06-08 08:47:45 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr6:161,049,089 INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 1053588 as yet unmatched pairs. 3128 records in RAM. INFO 2026-06-08 08:47:47 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr6:170,317,849 INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 1051024 as yet unmatched pairs. 555 records in RAM. INFO 2026-06-08 08:47:50 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 3s. Last read position: chr7:5,357,082 INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 1047872 as yet unmatched pairs. 74166 records in RAM. INFO 2026-06-08 08:47:53 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,467 INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 1048955 as yet unmatched pairs. 75245 records in RAM. INFO 2026-06-08 08:47:54 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:6,387,213 INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 1043392 as yet unmatched pairs. 69663 records in RAM. INFO 2026-06-08 08:47:56 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:20,158,489 INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 1039781 as yet unmatched pairs. 66039 records in RAM. INFO 2026-06-08 08:49:00 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 64s. Last read position: chr7:30,601,158 INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 1037207 as yet unmatched pairs. 63447 records in RAM. INFO 2026-06-08 08:49:02 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:43,866,810 INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 1035435 as yet unmatched pairs. 61661 records in RAM. INFO 2026-06-08 08:49:04 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:44,114,789 INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 1031764 as yet unmatched pairs. 57978 records in RAM. INFO 2026-06-08 08:49:05 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr7:55,151,305 INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 1028933 as yet unmatched pairs. 55120 records in RAM. INFO 2026-06-08 08:49:07 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr7:72,942,161 INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 1026508 as yet unmatched pairs. 52678 records in RAM. INFO 2026-06-08 08:49:09 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:74,195,205 INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 1024835 as yet unmatched pairs. 50995 records in RAM. INFO 2026-06-08 08:49:11 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:75,495,097 INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 1023081 as yet unmatched pairs. 49235 records in RAM. INFO 2026-06-08 08:49:12 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,064 INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 1035600 as yet unmatched pairs. 61742 records in RAM. INFO 2026-06-08 08:49:14 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:77,627,425 INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 1017585 as yet unmatched pairs. 43704 records in RAM. INFO 2026-06-08 08:49:16 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr7:92,015,807 INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 1016552 as yet unmatched pairs. 42639 records in RAM. INFO 2026-06-08 08:49:17 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr7:92,089,514 INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 1014508 as yet unmatched pairs. 40591 records in RAM. INFO 2026-06-08 08:49:19 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:94,400,206 INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 1014005 as yet unmatched pairs. 40067 records in RAM. INFO 2026-06-08 08:49:21 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:94,420,558 INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 1009223 as yet unmatched pairs. 35272 records in RAM. INFO 2026-06-08 08:49:23 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr7:96,184,317 INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 1004447 as yet unmatched pairs. 30483 records in RAM. INFO 2026-06-08 08:49:24 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,023,570 INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 1001811 as yet unmatched pairs. 27827 records in RAM. INFO 2026-06-08 08:49:26 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,819,652 INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 998748 as yet unmatched pairs. 24758 records in RAM. INFO 2026-06-08 08:49:27 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,229 INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 996937 as yet unmatched pairs. 22930 records in RAM. INFO 2026-06-08 08:49:29 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr7:107,600,421 INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 994683 as yet unmatched pairs. 20640 records in RAM. INFO 2026-06-08 08:49:31 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:127,374,611 INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 992286 as yet unmatched pairs. 18202 records in RAM. INFO 2026-06-08 08:49:32 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr7:128,947,309 INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 989319 as yet unmatched pairs. 15218 records in RAM. INFO 2026-06-08 08:49:34 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:137,908,288 INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 987268 as yet unmatched pairs. 13137 records in RAM. INFO 2026-06-08 08:49:36 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr7:140,455,883 INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 984753 as yet unmatched pairs. 10605 records in RAM. INFO 2026-06-08 08:49:37 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:143,862,862 INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 982048 as yet unmatched pairs. 7888 records in RAM. INFO 2026-06-08 08:49:39 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr7:150,857,550 INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 979020 as yet unmatched pairs. 4852 records in RAM. INFO 2026-06-08 08:49:41 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:152,229,923 INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 976803 as yet unmatched pairs. 2627 records in RAM. INFO 2026-06-08 08:49:43 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr8:9,029,815 INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 973638 as yet unmatched pairs. 55468 records in RAM. INFO 2026-06-08 08:49:44 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:17,754,684 INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 971093 as yet unmatched pairs. 52919 records in RAM. INFO 2026-06-08 08:49:46 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:22,606,980 INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 971317 as yet unmatched pairs. 53136 records in RAM. INFO 2026-06-08 08:49:48 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:27,598,089 INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 966639 as yet unmatched pairs. 48441 records in RAM. INFO 2026-06-08 08:49:49 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:29,337,065 INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 963575 as yet unmatched pairs. 45360 records in RAM. INFO 2026-06-08 08:49:52 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr8:37,871,468 INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 959564 as yet unmatched pairs. 41336 records in RAM. INFO 2026-06-08 08:49:54 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr8:38,440,281 INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 957710 as yet unmatched pairs. 39466 records in RAM. INFO 2026-06-08 08:49:56 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:47,700,401 INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 954379 as yet unmatched pairs. 36126 records in RAM. INFO 2026-06-08 08:49:57 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:56,993,318 INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 951188 as yet unmatched pairs. 32921 records in RAM. INFO 2026-06-08 08:49:59 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr8:70,124,841 INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 949985 as yet unmatched pairs. 31684 records in RAM. INFO 2026-06-08 08:50:01 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr8:79,765,275 INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 946346 as yet unmatched pairs. 28033 records in RAM. INFO 2026-06-08 08:50:02 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:94,827,766 INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 943937 as yet unmatched pairs. 25609 records in RAM. INFO 2026-06-08 08:50:04 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,708 INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 942238 as yet unmatched pairs. 23897 records in RAM. INFO 2026-06-08 08:50:05 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:104,429,570 INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 938724 as yet unmatched pairs. 20364 records in RAM. INFO 2026-06-08 08:50:07 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:115,604,787 INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 938479 as yet unmatched pairs. 20081 records in RAM. INFO 2026-06-08 08:50:09 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:123,105,428 INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 933818 as yet unmatched pairs. 15390 records in RAM. INFO 2026-06-08 08:50:11 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr8:133,227,614 INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 931332 as yet unmatched pairs. 12884 records in RAM. INFO 2026-06-08 08:50:12 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,730,178 INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 928128 as yet unmatched pairs. 9660 records in RAM. INFO 2026-06-08 08:50:13 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,584 INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 926691 as yet unmatched pairs. 8222 records in RAM. INFO 2026-06-08 08:50:15 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,037 INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 924121 as yet unmatched pairs. 5637 records in RAM. INFO 2026-06-08 08:50:16 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:144,467,040 INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 920236 as yet unmatched pairs. 1739 records in RAM. INFO 2026-06-08 08:50:18 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr9:5,746,079 INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 917131 as yet unmatched pairs. 55249 records in RAM. INFO 2026-06-08 08:50:20 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:16,727,978 INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 914536 as yet unmatched pairs. 52635 records in RAM. INFO 2026-06-08 08:50:22 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:33,264,253 INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 913409 as yet unmatched pairs. 51476 records in RAM. INFO 2026-06-08 08:50:23 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:35,609,603 INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 908800 as yet unmatched pairs. 46855 records in RAM. INFO 2026-06-08 08:50:25 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:39,461,781 INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 905836 as yet unmatched pairs. 43865 records in RAM. INFO 2026-06-08 08:50:27 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:82,997,046 INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 904355 as yet unmatched pairs. 42343 records in RAM. INFO 2026-06-08 08:50:29 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr9:89,338,463 INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 901580 as yet unmatched pairs. 39551 records in RAM. INFO 2026-06-08 08:50:30 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr9:93,673,729 INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 898952 as yet unmatched pairs. 36902 records in RAM. INFO 2026-06-08 08:50:32 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:101,562,338 INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 895877 as yet unmatched pairs. 33799 records in RAM. INFO 2026-06-08 08:50:34 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:111,914,631 INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 894852 as yet unmatched pairs. 32751 records in RAM. INFO 2026-06-08 08:50:35 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:114,283,744 INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 890412 as yet unmatched pairs. 28301 records in RAM. INFO 2026-06-08 08:50:37 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr9:121,301,941 INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 888725 as yet unmatched pairs. 26590 records in RAM. INFO 2026-06-08 08:50:40 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:125,240,197 INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 886548 as yet unmatched pairs. 24396 records in RAM. INFO 2026-06-08 08:50:41 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr9:128,180,433 INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 881563 as yet unmatched pairs. 19366 records in RAM. INFO 2026-06-08 08:50:43 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:128,803,983 INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 878385 as yet unmatched pairs. 16173 records in RAM. INFO 2026-06-08 08:50:45 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr9:130,885,067 INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 876368 as yet unmatched pairs. 14143 records in RAM. INFO 2026-06-08 08:50:46 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:133,341,553 INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 873109 as yet unmatched pairs. 10875 records in RAM. INFO 2026-06-08 08:50:48 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr9:135,095,929 INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 869794 as yet unmatched pairs. 7535 records in RAM. INFO 2026-06-08 08:50:49 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:136,839,076 INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 867373 as yet unmatched pairs. 5110 records in RAM. INFO 2026-06-08 08:50:51 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:137,464,352 INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 863498 as yet unmatched pairs. 1232 records in RAM. INFO 2026-06-08 08:50:53 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr10:5,684,991 INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 860593 as yet unmatched pairs. 53056 records in RAM. INFO 2026-06-08 08:50:55 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:8,064,018 INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 860413 as yet unmatched pairs. 52865 records in RAM. INFO 2026-06-08 08:50:56 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:17,233,592 INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 857260 as yet unmatched pairs. 49700 records in RAM. INFO 2026-06-08 08:50:58 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr10:25,175,702 INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 852686 as yet unmatched pairs. 45105 records in RAM. INFO 2026-06-08 08:50:59 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:32,018,121 INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 853247 as yet unmatched pairs. 45643 records in RAM. INFO 2026-06-08 08:51:01 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr10:32,923,594 INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 848866 as yet unmatched pairs. 41249 records in RAM. INFO 2026-06-08 08:51:03 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:43,109,034 INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 846496 as yet unmatched pairs. 38846 records in RAM. INFO 2026-06-08 08:51:04 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,655 INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 845368 as yet unmatched pairs. 37707 records in RAM. INFO 2026-06-08 08:51:06 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:51,698,949 INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 841479 as yet unmatched pairs. 33803 records in RAM. INFO 2026-06-08 08:51:08 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr10:63,222,260 INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 838981 as yet unmatched pairs. 31288 records in RAM. INFO 2026-06-08 08:51:10 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr10:71,291,098 INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 835954 as yet unmatched pairs. 28237 records in RAM. INFO 2026-06-08 08:51:11 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:73,807,754 INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 833412 as yet unmatched pairs. 25677 records in RAM. INFO 2026-06-08 08:51:13 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr10:79,712,813 INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 830702 as yet unmatched pairs. 22952 records in RAM. INFO 2026-06-08 08:51:15 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr10:87,957,938 INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 829430 as yet unmatched pairs. 21654 records in RAM. INFO 2026-06-08 08:51:16 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr10:94,441,900 INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 825870 as yet unmatched pairs. 18081 records in RAM. INFO 2026-06-08 08:51:18 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:99,726,967 INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 823172 as yet unmatched pairs. 15374 records in RAM. INFO 2026-06-08 08:51:19 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:102,149,934 INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 820302 as yet unmatched pairs. 12482 records in RAM. INFO 2026-06-08 08:51:21 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr10:110,510,181 INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 817674 as yet unmatched pairs. 9845 records in RAM. INFO 2026-06-08 08:51:23 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr10:116,927,814 INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 818841 as yet unmatched pairs. 10996 records in RAM. INFO 2026-06-08 08:51:24 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr10:121,770,976 INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 812749 as yet unmatched pairs. 4888 records in RAM. INFO 2026-06-08 08:51:26 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr10:127,362,181 INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 810061 as yet unmatched pairs. 2185 records in RAM. INFO 2026-06-08 08:51:28 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr11:292,594 INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 808648 as yet unmatched pairs. 113487 records in RAM. INFO 2026-06-08 08:51:30 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:320,601 INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 806843 as yet unmatched pairs. 111679 records in RAM. INFO 2026-06-08 08:51:32 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:828,908 INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 801135 as yet unmatched pairs. 105963 records in RAM. INFO 2026-06-08 08:51:33 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:2,396,806 INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 799070 as yet unmatched pairs. 103882 records in RAM. INFO 2026-06-08 08:51:35 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:6,610,220 INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 795534 as yet unmatched pairs. 100324 records in RAM. INFO 2026-06-08 08:51:36 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:9,586,784 INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 792208 as yet unmatched pairs. 96975 records in RAM. INFO 2026-06-08 08:51:38 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:14,513,636 INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 789746 as yet unmatched pairs. 94503 records in RAM. INFO 2026-06-08 08:51:40 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:27,357,425 INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 786707 as yet unmatched pairs. 91453 records in RAM. INFO 2026-06-08 08:51:41 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:35,139,182 INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 784364 as yet unmatched pairs. 89091 records in RAM. INFO 2026-06-08 08:51:44 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:45,933,999 INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 781750 as yet unmatched pairs. 86464 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:47,329,051 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 778839 as yet unmatched pairs. 83539 records in RAM. INFO 2026-06-08 08:51:47 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:57,528,854 INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 776855 as yet unmatched pairs. 81518 records in RAM. INFO 2026-06-08 08:51:49 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr11:59,151,895 INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 774005 as yet unmatched pairs. 78661 records in RAM. INFO 2026-06-08 08:51:51 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:61,415,714 INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 771398 as yet unmatched pairs. 76039 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,411 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 768637 as yet unmatched pairs. 73260 records in RAM. INFO 2026-06-08 08:51:54 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,381 INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 768653 as yet unmatched pairs. 73272 records in RAM. INFO 2026-06-08 08:51:56 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,872 INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 766277 as yet unmatched pairs. 70893 records in RAM. INFO 2026-06-08 08:51:58 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,486 INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 764048 as yet unmatched pairs. 68661 records in RAM. INFO 2026-06-08 08:51:59 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:63,904,117 INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 759088 as yet unmatched pairs. 63700 records in RAM. INFO 2026-06-08 08:52:01 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:65,321,114 INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 756136 as yet unmatched pairs. 60733 records in RAM. INFO 2026-06-08 08:52:03 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:65,580,349 INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 753412 as yet unmatched pairs. 57872 records in RAM. INFO 2026-06-08 08:52:04 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:65,658,803 INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 750808 as yet unmatched pairs. 55261 records in RAM. INFO 2026-06-08 08:52:06 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:65,921,378 INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 747001 as yet unmatched pairs. 51444 records in RAM. INFO 2026-06-08 08:52:08 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,691 INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 743963 as yet unmatched pairs. 48387 records in RAM. INFO 2026-06-08 08:52:09 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:66,701,080 INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 740908 as yet unmatched pairs. 45319 records in RAM. INFO 2026-06-08 08:52:11 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:67,397,294 INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 737483 as yet unmatched pairs. 41880 records in RAM. INFO 2026-06-08 08:52:13 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:68,043,626 INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 734665 as yet unmatched pairs. 39056 records in RAM. INFO 2026-06-08 08:52:14 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,266 INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 738108 as yet unmatched pairs. 42477 records in RAM. INFO 2026-06-08 08:52:16 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,098 INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 740297 as yet unmatched pairs. 44649 records in RAM. INFO 2026-06-08 08:52:18 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:70,420,379 INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 726466 as yet unmatched pairs. 30812 records in RAM. INFO 2026-06-08 08:52:19 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:72,018,196 INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 722725 as yet unmatched pairs. 27053 records in RAM. INFO 2026-06-08 08:52:21 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:73,975,568 INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 722165 as yet unmatched pairs. 26487 records in RAM. INFO 2026-06-08 08:52:23 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:76,796,111 INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 717311 as yet unmatched pairs. 21626 records in RAM. INFO 2026-06-08 08:52:24 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:77,619,685 INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 715576 as yet unmatched pairs. 19873 records in RAM. INFO 2026-06-08 08:52:27 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr11:82,824,867 INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 712616 as yet unmatched pairs. 16895 records in RAM. INFO 2026-06-08 08:52:29 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:88,337,589 INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 709337 as yet unmatched pairs. 13599 records in RAM. INFO 2026-06-08 08:52:30 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:103,091,776 INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 706747 as yet unmatched pairs. 10994 records in RAM. INFO 2026-06-08 08:52:32 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:117,203,859 INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 704538 as yet unmatched pairs. 8770 records in RAM. INFO 2026-06-08 08:52:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:119,051,490 INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 701589 as yet unmatched pairs. 5819 records in RAM. INFO 2026-06-08 08:52:35 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:125,000,088 INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 698752 as yet unmatched pairs. 2960 records in RAM. INFO 2026-06-08 08:52:37 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:134,249,173 INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 695886 as yet unmatched pairs. 85 records in RAM. INFO 2026-06-08 08:52:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr12:3,011,055 INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 693310 as yet unmatched pairs. 81859 records in RAM. INFO 2026-06-08 08:52:41 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:6,588,316 INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 690636 as yet unmatched pairs. 79177 records in RAM. INFO 2026-06-08 08:52:42 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:7,060,774 INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 687872 as yet unmatched pairs. 76402 records in RAM. INFO 2026-06-08 08:52:44 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:9,113,416 INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 685716 as yet unmatched pairs. 74240 records in RAM. INFO 2026-06-08 08:52:46 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:14,447,042 INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 683202 as yet unmatched pairs. 71708 records in RAM. INFO 2026-06-08 08:52:47 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:22,673,554 INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 680668 as yet unmatched pairs. 69158 records in RAM. INFO 2026-06-08 08:52:49 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:32,750,052 INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 677708 as yet unmatched pairs. 66182 records in RAM. INFO 2026-06-08 08:52:51 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr12:47,669,069 INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 675489 as yet unmatched pairs. 63950 records in RAM. INFO 2026-06-08 08:52:53 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,890 INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 672898 as yet unmatched pairs. 61352 records in RAM. INFO 2026-06-08 08:52:55 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:49,758,723 INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 672612 as yet unmatched pairs. 61059 records in RAM. INFO 2026-06-08 08:52:56 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:52,052,622 INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 667749 as yet unmatched pairs. 56185 records in RAM. INFO 2026-06-08 08:52:58 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,168 INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 666378 as yet unmatched pairs. 54810 records in RAM. INFO 2026-06-08 08:53:00 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,567 INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 666084 as yet unmatched pairs. 54514 records in RAM. INFO 2026-06-08 08:53:02 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,252 INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 660378 as yet unmatched pairs. 48805 records in RAM. INFO 2026-06-08 08:53:03 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:56,088,850 INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 656959 as yet unmatched pairs. 45385 records in RAM. INFO 2026-06-08 08:53:05 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,760 INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 654020 as yet unmatched pairs. 42440 records in RAM. INFO 2026-06-08 08:53:07 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:57,095,304 INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 651213 as yet unmatched pairs. 39626 records in RAM. INFO 2026-06-08 08:53:08 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:57,190,969 INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 649179 as yet unmatched pairs. 37589 records in RAM. INFO 2026-06-08 08:53:11 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr12:57,715,807 INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 645854 as yet unmatched pairs. 34263 records in RAM. INFO 2026-06-08 08:53:13 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:66,145,901 INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 644631 as yet unmatched pairs. 33026 records in RAM. INFO 2026-06-08 08:53:15 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:71,880,490 INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 640913 as yet unmatched pairs. 29298 records in RAM. INFO 2026-06-08 08:53:16 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:91,146,045 INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 640142 as yet unmatched pairs. 28522 records in RAM. INFO 2026-06-08 08:53:18 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:96,920,032 INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 635781 as yet unmatched pairs. 24154 records in RAM. INFO 2026-06-08 08:53:20 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr12:103,946,900 INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 633816 as yet unmatched pairs. 22180 records in RAM. INFO 2026-06-08 08:53:21 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:109,209,192 INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 630876 as yet unmatched pairs. 19229 records in RAM. INFO 2026-06-08 08:53:23 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,356 INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 628560 as yet unmatched pairs. 16895 records in RAM. INFO 2026-06-08 08:53:25 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:114,677,642 INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 625865 as yet unmatched pairs. 14168 records in RAM. INFO 2026-06-08 08:53:26 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:120,197,399 INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 625308 as yet unmatched pairs. 13580 records in RAM. INFO 2026-06-08 08:53:28 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:122,244,732 INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 619562 as yet unmatched pairs. 7824 records in RAM. INFO 2026-06-08 08:53:31 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr12:124,337,123 INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 617182 as yet unmatched pairs. 5439 records in RAM. INFO 2026-06-08 08:53:32 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:132,044,228 INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 614011 as yet unmatched pairs. 2253 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr13:20,034,389 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 611673 as yet unmatched pairs. 16936 records in RAM. INFO 2026-06-08 08:53:35 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr13:32,078,950 INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 608720 as yet unmatched pairs. 13968 records in RAM. INFO 2026-06-08 08:53:37 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr13:39,014,078 INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 606418 as yet unmatched pairs. 11657 records in RAM. INFO 2026-06-08 08:53:39 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr13:48,256,314 INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 604085 as yet unmatched pairs. 9304 records in RAM. INFO 2026-06-08 08:53:40 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr13:77,077,330 INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 601254 as yet unmatched pairs. 6460 records in RAM. INFO 2026-06-08 08:53:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr13:108,209,687 INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 598519 as yet unmatched pairs. 3705 records in RAM. INFO 2026-06-08 08:53:43 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr13:113,633,182 INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 595492 as yet unmatched pairs. 666 records in RAM. INFO 2026-06-08 08:53:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr14:21,405,428 INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 593160 as yet unmatched pairs. 46089 records in RAM. INFO 2026-06-08 08:53:47 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:23,165,315 INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 590804 as yet unmatched pairs. 43728 records in RAM. INFO 2026-06-08 08:53:49 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:24,270,415 INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 587390 as yet unmatched pairs. 40313 records in RAM. INFO 2026-06-08 08:53:51 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr14:34,810,968 INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 584918 as yet unmatched pairs. 37833 records in RAM. INFO 2026-06-08 08:53:53 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,630 INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 582389 as yet unmatched pairs. 35295 records in RAM. INFO 2026-06-08 08:53:55 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:54,962,737 INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 579302 as yet unmatched pairs. 32179 records in RAM. INFO 2026-06-08 08:53:57 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr14:60,975,554 INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 576845 as yet unmatched pairs. 29719 records in RAM. INFO 2026-06-08 08:53:59 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr14:65,454,025 INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 574128 as yet unmatched pairs. 26987 records in RAM. INFO 2026-06-08 08:54:00 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:69,771,263 INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 572514 as yet unmatched pairs. 25360 records in RAM. INFO 2026-06-08 08:54:02 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:74,502,679 INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 569253 as yet unmatched pairs. 22089 records in RAM. INFO 2026-06-08 08:54:04 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr14:77,026,634 INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 566145 as yet unmatched pairs. 18970 records in RAM. INFO 2026-06-08 08:54:06 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr14:91,485,703 INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 563629 as yet unmatched pairs. 16442 records in RAM. INFO 2026-06-08 08:54:07 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr14:95,093,967 INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 560723 as yet unmatched pairs. 13524 records in RAM. INFO 2026-06-08 08:54:09 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:101,983,601 INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 558391 as yet unmatched pairs. 11186 records in RAM. INFO 2026-06-08 08:54:11 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr14:103,335,919 INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 555549 as yet unmatched pairs. 8330 records in RAM. INFO 2026-06-08 08:54:12 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr14:105,146,695 INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 552240 as yet unmatched pairs. 5015 records in RAM. INFO 2026-06-08 08:54:14 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,341 INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 551037 as yet unmatched pairs. 3795 records in RAM. INFO 2026-06-08 08:54:15 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,906 INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 549882 as yet unmatched pairs. 2640 records in RAM. INFO 2026-06-08 08:54:17 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr15:29,269,196 INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 545415 as yet unmatched pairs. 47108 records in RAM. INFO 2026-06-08 08:54:19 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:34,982,386 INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 543279 as yet unmatched pairs. 44969 records in RAM. INFO 2026-06-08 08:54:21 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:40,339,508 INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 540649 as yet unmatched pairs. 42332 records in RAM. INFO 2026-06-08 08:54:22 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:41,767,192 INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 537804 as yet unmatched pairs. 39480 records in RAM. INFO 2026-06-08 08:54:24 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:43,594,230 INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 535427 as yet unmatched pairs. 37103 records in RAM. INFO 2026-06-08 08:54:26 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:43,883,637 INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 532444 as yet unmatched pairs. 34107 records in RAM. INFO 2026-06-08 08:54:27 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr15:48,465,655 INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 530908 as yet unmatched pairs. 32559 records in RAM. INFO 2026-06-08 08:54:29 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr15:52,251,469 INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 527468 as yet unmatched pairs. 29112 records in RAM. INFO 2026-06-08 08:54:31 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr15:57,263,266 INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 526192 as yet unmatched pairs. 27821 records in RAM. INFO 2026-06-08 08:54:32 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr15:63,042,843 INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 523130 as yet unmatched pairs. 24747 records in RAM. INFO 2026-06-08 08:54:34 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr15:64,942,513 INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 519504 as yet unmatched pairs. 21111 records in RAM. INFO 2026-06-08 08:54:36 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr15:68,310,994 INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 516974 as yet unmatched pairs. 18576 records in RAM. INFO 2026-06-08 08:54:37 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:71,893,734 INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 514107 as yet unmatched pairs. 15671 records in RAM. INFO 2026-06-08 08:54:39 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr15:74,042,990 INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 511347 as yet unmatched pairs. 12910 records in RAM. INFO 2026-06-08 08:54:41 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr15:76,932,409 INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 508303 as yet unmatched pairs. 9863 records in RAM. INFO 2026-06-08 08:54:42 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:83,005,583 INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 505331 as yet unmatched pairs. 6884 records in RAM. INFO 2026-06-08 08:54:44 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr15:89,903,797 INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 503255 as yet unmatched pairs. 4803 records in RAM. INFO 2026-06-08 08:54:46 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr15:96,334,211 INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 500486 as yet unmatched pairs. 2024 records in RAM. INFO 2026-06-08 08:54:49 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr16:426,622 INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 497213 as yet unmatched pairs. 73364 records in RAM. INFO 2026-06-08 08:54:50 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,242,105 INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 494725 as yet unmatched pairs. 70859 records in RAM. INFO 2026-06-08 08:54:52 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr16:2,089,904 INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 490434 as yet unmatched pairs. 66567 records in RAM. INFO 2026-06-08 08:54:54 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,411 INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 487788 as yet unmatched pairs. 63918 records in RAM. INFO 2026-06-08 08:54:56 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:3,515,512 INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 484757 as yet unmatched pairs. 60884 records in RAM. INFO 2026-06-08 08:54:57 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:5,077,450 INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 481651 as yet unmatched pairs. 57771 records in RAM. INFO 2026-06-08 08:54:59 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:14,218,924 INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 480510 as yet unmatched pairs. 56628 records in RAM. INFO 2026-06-08 08:55:00 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:14,988,488 INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 477530 as yet unmatched pairs. 53648 records in RAM. INFO 2026-06-08 08:55:02 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:16,333,729 INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 475660 as yet unmatched pairs. 51770 records in RAM. INFO 2026-06-08 08:55:03 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:18,531,048 INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 474997 as yet unmatched pairs. 51100 records in RAM. INFO 2026-06-08 08:55:04 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,884 INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 473756 as yet unmatched pairs. 49856 records in RAM. INFO 2026-06-08 08:55:06 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:21,851,675 INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 471901 as yet unmatched pairs. 48001 records in RAM. INFO 2026-06-08 08:55:07 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,067 INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 471364 as yet unmatched pairs. 47460 records in RAM. INFO 2026-06-08 08:55:09 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:28,383,358 INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 468544 as yet unmatched pairs. 44636 records in RAM. INFO 2026-06-08 08:55:10 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:28,959,004 INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 466271 as yet unmatched pairs. 42360 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:29,541,573 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 465623 as yet unmatched pairs. 41709 records in RAM. INFO 2026-06-08 08:55:13 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,239 INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 464418 as yet unmatched pairs. 40504 records in RAM. INFO 2026-06-08 08:55:14 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:30,570,241 INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 460496 as yet unmatched pairs. 36579 records in RAM. INFO 2026-06-08 08:55:16 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,519 INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 460514 as yet unmatched pairs. 36592 records in RAM. INFO 2026-06-08 08:55:18 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:34,267,002 INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 454835 as yet unmatched pairs. 30910 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:53,481,665 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 452359 as yet unmatched pairs. 28432 records in RAM. INFO 2026-06-08 08:55:21 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr16:56,609,292 INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 449194 as yet unmatched pairs. 25263 records in RAM. INFO 2026-06-08 08:55:23 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:58,734,173 INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 445892 as yet unmatched pairs. 21953 records in RAM. INFO 2026-06-08 08:55:24 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:67,663,542 INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 442910 as yet unmatched pairs. 18971 records in RAM. INFO 2026-06-08 08:55:26 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:69,118,316 INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 440532 as yet unmatched pairs. 16590 records in RAM. INFO 2026-06-08 08:55:28 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:70,567,461 INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 437489 as yet unmatched pairs. 13545 records in RAM. INFO 2026-06-08 08:55:30 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:74,469,984 INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 434897 as yet unmatched pairs. 10950 records in RAM. INFO 2026-06-08 08:55:31 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:84,180,241 INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 431821 as yet unmatched pairs. 7870 records in RAM. INFO 2026-06-08 08:55:33 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:88,431,509 INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 428978 as yet unmatched pairs. 5020 records in RAM. INFO 2026-06-08 08:55:34 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:89,560,998 INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 426310 as yet unmatched pairs. 2341 records in RAM. INFO 2026-06-08 08:55:37 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 3s. Last read position: chr17:1,361,191 INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 430693 as yet unmatched pairs. 171834 records in RAM. INFO 2026-06-08 08:55:39 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:1,681,950 INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 420311 as yet unmatched pairs. 161452 records in RAM. INFO 2026-06-08 08:55:41 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:3,936,354 INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 417566 as yet unmatched pairs. 158704 records in RAM. INFO 2026-06-08 08:55:43 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr17:4,948,263 INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 414426 as yet unmatched pairs. 155558 records in RAM. INFO 2026-06-08 08:55:45 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr17:7,225,129 INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 410918 as yet unmatched pairs. 152043 records in RAM. INFO 2026-06-08 08:55:47 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,321 INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 410343 as yet unmatched pairs. 151468 records in RAM. INFO 2026-06-08 08:55:49 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:7,903,879 INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 405903 as yet unmatched pairs. 147026 records in RAM. INFO 2026-06-08 08:55:51 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:12,998,442 INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 403206 as yet unmatched pairs. 144329 records in RAM. INFO 2026-06-08 08:55:52 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr17:17,138,368 INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 400752 as yet unmatched pairs. 141866 records in RAM. INFO 2026-06-08 08:55:54 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:18,254,634 INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 398090 as yet unmatched pairs. 139201 records in RAM. INFO 2026-06-08 08:55:56 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:28,122,680 INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 394934 as yet unmatched pairs. 136044 records in RAM. INFO 2026-06-08 08:55:57 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:29,293,943 INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 392133 as yet unmatched pairs. 133236 records in RAM. INFO 2026-06-08 08:55:59 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:31,983,053 INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 390320 as yet unmatched pairs. 131414 records in RAM. INFO 2026-06-08 08:56:01 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:35,824,187 INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 388611 as yet unmatched pairs. 129705 records in RAM. INFO 2026-06-08 08:56:59 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 58s. Last read position: chr17:38,257,071 INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 384950 as yet unmatched pairs. 126041 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 69s. Last read position: chr17:39,629,169 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 382068 as yet unmatched pairs. 123159 records in RAM. INFO 2026-06-08 08:58:11 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr17:39,724,875 INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 382006 as yet unmatched pairs. 123097 records in RAM. INFO 2026-06-08 08:58:13 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:40,354,316 INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 377378 as yet unmatched pairs. 118469 records in RAM. INFO 2026-06-08 08:58:14 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:41,689,057 INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 374339 as yet unmatched pairs. 115424 records in RAM. INFO 2026-06-08 08:58:16 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:42,337,437 INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 370787 as yet unmatched pairs. 111868 records in RAM. INFO 2026-06-08 08:58:18 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:43,774,908 INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 367096 as yet unmatched pairs. 108176 records in RAM. INFO 2026-06-08 08:58:19 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:45,453,555 INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 364048 as yet unmatched pairs. 105120 records in RAM. INFO 2026-06-08 08:58:21 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:47,664,250 INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 362334 as yet unmatched pairs. 103404 records in RAM. INFO 2026-06-08 08:58:22 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,445 INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 366004 as yet unmatched pairs. 107073 records in RAM. INFO 2026-06-08 08:58:24 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,317 INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 371082 as yet unmatched pairs. 112151 records in RAM. INFO 2026-06-08 08:58:26 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,853 INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 384132 as yet unmatched pairs. 125198 records in RAM. INFO 2026-06-08 08:58:28 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,483 INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 395497 as yet unmatched pairs. 136563 records in RAM. INFO 2026-06-08 08:58:29 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,095 INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 401554 as yet unmatched pairs. 142618 records in RAM. INFO 2026-06-08 08:58:31 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,772 INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 401119 as yet unmatched pairs. 142183 records in RAM. INFO 2026-06-08 08:58:33 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,397 INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 365832 as yet unmatched pairs. 106896 records in RAM. INFO 2026-06-08 08:58:35 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,685 INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 424207 as yet unmatched pairs. 165262 records in RAM. INFO 2026-06-08 08:58:38 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,097 INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 396494 as yet unmatched pairs. 137535 records in RAM. INFO 2026-06-08 08:58:40 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,417 INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 373334 as yet unmatched pairs. 114375 records in RAM. INFO 2026-06-08 08:58:42 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,666 INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 367006 as yet unmatched pairs. 108046 records in RAM. INFO 2026-06-08 08:58:44 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,963 INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 379592 as yet unmatched pairs. 120627 records in RAM. INFO 2026-06-08 08:58:46 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,173 INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 420297 as yet unmatched pairs. 161332 records in RAM. INFO 2026-06-08 08:58:47 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,754 INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 366522 as yet unmatched pairs. 107557 records in RAM. INFO 2026-06-08 08:58:49 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,469 INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 336852 as yet unmatched pairs. 77877 records in RAM. INFO 2026-06-08 08:58:51 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,177 INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 335053 as yet unmatched pairs. 76077 records in RAM. INFO 2026-06-08 08:58:53 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,499 INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 378310 as yet unmatched pairs. 119327 records in RAM. INFO 2026-06-08 08:58:54 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,216 INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 358287 as yet unmatched pairs. 99304 records in RAM. INFO 2026-06-08 08:58:56 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,464 INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 331585 as yet unmatched pairs. 72596 records in RAM. INFO 2026-06-08 08:58:58 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,571 INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 318123 as yet unmatched pairs. 59129 records in RAM. INFO 2026-06-08 08:59:01 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr17:50,201,556 INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 297262 as yet unmatched pairs. 38260 records in RAM. INFO 2026-06-08 08:59:03 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr17:57,872,753 INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 294674 as yet unmatched pairs. 35668 records in RAM. INFO 2026-06-08 08:59:05 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr17:59,666,538 INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 294363 as yet unmatched pairs. 35352 records in RAM. INFO 2026-06-08 08:59:06 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:60,910,567 INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 289313 as yet unmatched pairs. 30301 records in RAM. INFO 2026-06-08 08:59:08 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:63,837,502 INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 286820 as yet unmatched pairs. 27804 records in RAM. INFO 2026-06-08 08:59:10 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:67,944,336 INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 284473 as yet unmatched pairs. 25454 records in RAM. INFO 2026-06-08 08:59:11 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr17:72,849,784 INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 281755 as yet unmatched pairs. 22736 records in RAM. INFO 2026-06-08 08:59:13 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:75,504,995 INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 278762 as yet unmatched pairs. 19741 records in RAM. INFO 2026-06-08 08:59:15 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr17:76,212,469 INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 275410 as yet unmatched pairs. 16387 records in RAM. INFO 2026-06-08 08:59:16 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:78,681,010 INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 272755 as yet unmatched pairs. 13724 records in RAM. INFO 2026-06-08 08:59:18 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr17:80,349,800 INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 269545 as yet unmatched pairs. 10506 records in RAM. INFO 2026-06-08 08:59:19 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:81,696,628 INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 266236 as yet unmatched pairs. 7187 records in RAM. INFO 2026-06-08 08:59:21 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,818 INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 264315 as yet unmatched pairs. 5263 records in RAM. INFO 2026-06-08 08:59:23 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:82,748,872 INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 259727 as yet unmatched pairs. 669 records in RAM. INFO 2026-06-08 08:59:25 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 2s. Last read position: chr18:9,337,217 INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 257040 as yet unmatched pairs. 14632 records in RAM. INFO 2026-06-08 08:59:27 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 2s. Last read position: chr18:23,532,230 INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 254337 as yet unmatched pairs. 11916 records in RAM. INFO 2026-06-08 08:59:29 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr18:36,112,493 INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 253210 as yet unmatched pairs. 10785 records in RAM. INFO 2026-06-08 08:59:31 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr18:46,846,793 INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 249529 as yet unmatched pairs. 7102 records in RAM. INFO 2026-06-08 08:59:32 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr18:58,165,844 INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 247318 as yet unmatched pairs. 4882 records in RAM. INFO 2026-06-08 08:59:34 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr18:74,497,583 INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 244146 as yet unmatched pairs. 1698 records in RAM. INFO 2026-06-08 08:59:38 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 3s. Last read position: chr19:813,030 INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 240695 as yet unmatched pairs. 100733 records in RAM. INFO 2026-06-08 08:59:40 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:1,272,377 INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 239183 as yet unmatched pairs. 99221 records in RAM. INFO 2026-06-08 08:59:42 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:2,151,242 INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 233920 as yet unmatched pairs. 93954 records in RAM. INFO 2026-06-08 08:59:43 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:3,638,900 INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 230772 as yet unmatched pairs. 90803 records in RAM. INFO 2026-06-08 08:59:45 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:5,151,438 INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 227543 as yet unmatched pairs. 87571 records in RAM. INFO 2026-06-08 08:59:47 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:6,693,046 INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 225010 as yet unmatched pairs. 85038 records in RAM. INFO 2026-06-08 08:59:49 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:7,871,627 INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 221648 as yet unmatched pairs. 81676 records in RAM. INFO 2026-06-08 08:59:50 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:10,115,488 INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 218592 as yet unmatched pairs. 78619 records in RAM. INFO 2026-06-08 08:59:52 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,141 INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 216159 as yet unmatched pairs. 76182 records in RAM. INFO 2026-06-08 08:59:55 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr19:12,015,780 INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 212472 as yet unmatched pairs. 72494 records in RAM. INFO 2026-06-08 08:59:57 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:12,995,822 INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 209571 as yet unmatched pairs. 69592 records in RAM. INFO 2026-06-08 08:59:58 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:14,480,765 INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 206562 as yet unmatched pairs. 66581 records in RAM. INFO 2026-06-08 09:00:01 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 2s. Last read position: chr19:15,244,527 INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 204698 as yet unmatched pairs. 64716 records in RAM. INFO 2026-06-08 09:00:04 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 3s. Last read position: chr19:16,386,199 INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 200470 as yet unmatched pairs. 60487 records in RAM. INFO 2026-06-08 09:00:06 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,932 INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 200145 as yet unmatched pairs. 60160 records in RAM. INFO 2026-06-08 09:00:07 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:18,850,831 INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 193849 as yet unmatched pairs. 53860 records in RAM. INFO 2026-06-08 09:00:09 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:29,207,546 INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 190944 as yet unmatched pairs. 50953 records in RAM. INFO 2026-06-08 09:00:11 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:35,122,789 INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 192945 as yet unmatched pairs. 52952 records in RAM. INFO 2026-06-08 09:00:12 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:36,003,492 INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 184906 as yet unmatched pairs. 44913 records in RAM. INFO 2026-06-08 09:00:14 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:38,620,346 INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 183712 as yet unmatched pairs. 43716 records in RAM. INFO 2026-06-08 09:00:16 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:39,424,314 INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 179304 as yet unmatched pairs. 39307 records in RAM. INFO 2026-06-08 09:00:18 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr19:40,458,468 INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 176739 as yet unmatched pairs. 36741 records in RAM. INFO 2026-06-08 09:00:20 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:42,117,321 INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 172998 as yet unmatched pairs. 32990 records in RAM. INFO 2026-06-08 09:00:21 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:42,522,165 INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 170073 as yet unmatched pairs. 30062 records in RAM. INFO 2026-06-08 09:00:23 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:44,916,233 INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 168489 as yet unmatched pairs. 28476 records in RAM. INFO 2026-06-08 09:00:25 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:45,872,310 INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 163426 as yet unmatched pairs. 23413 records in RAM. INFO 2026-06-08 09:00:26 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:47,716,651 INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 160437 as yet unmatched pairs. 20419 records in RAM. INFO 2026-06-08 09:00:28 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:49,090,289 INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 157878 as yet unmatched pairs. 17856 records in RAM. INFO 2026-06-08 09:00:31 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr19:49,635,555 INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 154492 as yet unmatched pairs. 14468 records in RAM. INFO 2026-06-08 09:00:32 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:51,457,474 INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 150837 as yet unmatched pairs. 10812 records in RAM. INFO 2026-06-08 09:00:35 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr19:54,178,897 INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 148514 as yet unmatched pairs. 8489 records in RAM. INFO 2026-06-08 09:00:36 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:55,498,117 INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 145396 as yet unmatched pairs. 5369 records in RAM. INFO 2026-06-08 09:00:38 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:57,840,962 INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 143152 as yet unmatched pairs. 3119 records in RAM. INFO 2026-06-08 09:00:40 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:58,569,293 INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 140316 as yet unmatched pairs. 283 records in RAM. INFO 2026-06-08 09:00:42 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr20:3,560,777 INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 137077 as yet unmatched pairs. 32658 records in RAM. INFO 2026-06-08 09:00:44 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr20:17,600,755 INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 134957 as yet unmatched pairs. 30537 records in RAM. INFO 2026-06-08 09:00:45 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr20:23,049,246 INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 131526 as yet unmatched pairs. 27105 records in RAM. INFO 2026-06-08 09:00:47 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr20:33,657,949 INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 129597 as yet unmatched pairs. 25176 records in RAM. INFO 2026-06-08 09:00:49 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:35,653,522 INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 126395 as yet unmatched pairs. 21973 records in RAM. INFO 2026-06-08 09:00:50 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr20:38,089,725 INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 123066 as yet unmatched pairs. 18644 records in RAM. INFO 2026-06-08 09:00:52 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,251 INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 121478 as yet unmatched pairs. 17054 records in RAM. INFO 2026-06-08 09:00:54 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr20:47,647,207 INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 117466 as yet unmatched pairs. 13041 records in RAM. INFO 2026-06-08 09:00:55 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr20:50,892,894 INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 114955 as yet unmatched pairs. 10525 records in RAM. INFO 2026-06-08 09:00:57 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,622 INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 116550 as yet unmatched pairs. 12108 records in RAM. INFO 2026-06-08 09:00:59 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr20:62,352,002 INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 108626 as yet unmatched pairs. 4180 records in RAM. INFO 2026-06-08 09:01:00 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr20:63,959,891 INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 105279 as yet unmatched pairs. 830 records in RAM. INFO 2026-06-08 09:01:02 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,949 INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 103954 as yet unmatched pairs. 18615 records in RAM. INFO 2026-06-08 09:01:03 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr21:28,984,903 INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 102085 as yet unmatched pairs. 16746 records in RAM. INFO 2026-06-08 09:01:05 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr21:33,578,293 INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 98863 as yet unmatched pairs. 13523 records in RAM. INFO 2026-06-08 09:01:06 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr21:38,402,627 INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 96559 as yet unmatched pairs. 11218 records in RAM. INFO 2026-06-08 09:01:08 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr21:43,798,057 INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 93336 as yet unmatched pairs. 7993 records in RAM. INFO 2026-06-08 09:01:10 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 2s. Last read position: chr21:45,990,991 INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 92769 as yet unmatched pairs. 7426 records in RAM. INFO 2026-06-08 09:01:12 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,430 INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 87991 as yet unmatched pairs. 2646 records in RAM. INFO 2026-06-08 09:01:14 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:19,254,216 INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 83681 as yet unmatched pairs. 40633 records in RAM. INFO 2026-06-08 09:01:15 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr22:21,592,876 INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 83370 as yet unmatched pairs. 40322 records in RAM. INFO 2026-06-08 09:01:17 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,467 INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 78096 as yet unmatched pairs. 35048 records in RAM. INFO 2026-06-08 09:01:19 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,313 INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 77699 as yet unmatched pairs. 34651 records in RAM. INFO 2026-06-08 09:01:21 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr22:29,298,778 INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 74054 as yet unmatched pairs. 31006 records in RAM. INFO 2026-06-08 09:01:22 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:31,104,322 INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 68810 as yet unmatched pairs. 25762 records in RAM. INFO 2026-06-08 09:01:24 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr22:35,416,337 INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 65959 as yet unmatched pairs. 22911 records in RAM. INFO 2026-06-08 09:01:26 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr22:36,480,734 INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 62895 as yet unmatched pairs. 19847 records in RAM. INFO 2026-06-08 09:01:28 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:38,224,823 INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 59848 as yet unmatched pairs. 16799 records in RAM. INFO 2026-06-08 09:01:29 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr22:40,021,930 INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 56694 as yet unmatched pairs. 13645 records in RAM. INFO 2026-06-08 09:01:31 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr22:41,499,848 INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 54515 as yet unmatched pairs. 11464 records in RAM. INFO 2026-06-08 09:01:32 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr22:43,127,720 INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 51408 as yet unmatched pairs. 8357 records in RAM. INFO 2026-06-08 09:01:34 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr22:46,686,799 INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 48094 as yet unmatched pairs. 5043 records in RAM. INFO 2026-06-08 09:01:36 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr22:50,517,796 INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 45155 as yet unmatched pairs. 2101 records in RAM. INFO 2026-06-08 09:01:38 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:3,317,478 INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 41732 as yet unmatched pairs. 38509 records in RAM. INFO 2026-06-08 09:01:39 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:16,754,993 INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 39146 as yet unmatched pairs. 35923 records in RAM. INFO 2026-06-08 09:01:42 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 2s. Last read position: chrX:40,052,041 INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 36721 as yet unmatched pairs. 33497 records in RAM. INFO 2026-06-08 09:01:44 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:43,746,345 INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 34103 as yet unmatched pairs. 30879 records in RAM. INFO 2026-06-08 09:01:45 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:48,893,925 INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 31611 as yet unmatched pairs. 28387 records in RAM. INFO 2026-06-08 09:01:47 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:53,413,364 INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 29130 as yet unmatched pairs. 25906 records in RAM. INFO 2026-06-08 09:01:48 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:57,120,040 INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 26029 as yet unmatched pairs. 22805 records in RAM. INFO 2026-06-08 09:01:50 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chrX:71,296,569 INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 23934 as yet unmatched pairs. 20710 records in RAM. INFO 2026-06-08 09:01:51 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:77,600,538 INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 21031 as yet unmatched pairs. 17807 records in RAM. INFO 2026-06-08 09:01:53 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chrX:101,010,635 INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 18360 as yet unmatched pairs. 15136 records in RAM. INFO 2026-06-08 09:01:54 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chrX:107,601,059 INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 15497 as yet unmatched pairs. 12273 records in RAM. INFO 2026-06-08 09:01:56 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chrX:121,048,605 INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 13028 as yet unmatched pairs. 9804 records in RAM. INFO 2026-06-08 09:01:58 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chrX:136,879,027 INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 11178 as yet unmatched pairs. 7954 records in RAM. INFO 2026-06-08 09:01:59 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chrX:153,951,963 INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 8031 as yet unmatched pairs. 4807 records in RAM. INFO 2026-06-08 09:02:01 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chrX:154,432,358 INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 5628 as yet unmatched pairs. 2404 records in RAM. INFO 2026-06-08 09:02:02 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,713 INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 2699 as yet unmatched pairs. 913 records in RAM. INFO 2026-06-08 09:02:03 MarkDuplicates Read 625980790 records. 0 pairs never matched. INFO 2026-06-08 09:02:54 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140456; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:02:54 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:02:57 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:02:57 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:03:03 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 09:03:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,440 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder Large duplicate set. size = 1763 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,640 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,860 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder Large duplicate set. size = 2103 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,300 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,636 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:03:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,111 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1720 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,523 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1133 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,194 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1556 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,925 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1021 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,949 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1694 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,701 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,172 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1983 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,973 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1884 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,815 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1169 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,705 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1672 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,282 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,324 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,977 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1059 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,844 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1317 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,688 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1805 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,464 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,107 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,033 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1110 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,033 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,658 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,307 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,457 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1233 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,217 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,540 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,014 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1588 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,421 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1388 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,642 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1343 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,408 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1189 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,020 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,062 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1196 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,853 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1398 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,655 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 2438 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,784 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,922 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,788 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1117 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,126 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder Large duplicate set. size = 1600 INFO 2026-06-08 09:03:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,937 INFO 2026-06-08 09:03:49 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-08 09:03:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,227 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 1801 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,936 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 1317 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,006 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,569 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 2293 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,642 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,958 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 1597 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,680 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,488 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 1073 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,632 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 2014 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,776 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,432 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 09:04:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,433 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,729 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1149 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,822 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,386 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,242 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 2193 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,205 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,459 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1204 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,766 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,241 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1213 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,930 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1120 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,752 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,594 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1173 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,080 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1503 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,537 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 09:04:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,695 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1201 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,691 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,771 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,038 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,655 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1353 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,721 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1377 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,783 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,290 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1152 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,014 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1122 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,130 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,572 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,325 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1713 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,019 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,313 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 09:04:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,559 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,312 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1615 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,508 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1227 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,626 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,748 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1440 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,176 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1643 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,676 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1628 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,534 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder Large duplicate set. size = 1754 INFO 2026-06-08 09:04:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,518 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1259 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,414 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,120 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 2884 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,990 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,206 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1032 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,572 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1489 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,438 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 2422 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,183 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,028 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 2074 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,291 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,728 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1512 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,648 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 2315 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,022 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,992 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 2195 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,343 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 2765 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,609 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,907 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1591 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,015 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1780 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,729 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 3486 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,388 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,298 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,577 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1315 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,144 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1209 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,493 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,580 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1387 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,912 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1846 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,379 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1331 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,589 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 4027 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,189 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,361 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,886 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,593 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1407 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,230 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1985 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,086 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1385 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,192 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1318 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,613 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder Large duplicate set. size = 1333 INFO 2026-06-08 09:04:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,269 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,991 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1289 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,733 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,842 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1074 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,816 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1493 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,176 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 2054 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,568 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,935 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 2696 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,174 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,259 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1448 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,493 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1975 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1184 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,921 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 2441 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,497 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,326 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1366 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,982 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1171 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,862 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1009 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,448 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1279 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,959 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1335 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,040 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,261 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1457 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,866 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1311 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,707 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1078 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,152 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,499 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1623 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,889 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1503 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,806 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1357 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,834 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1805 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,442 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1145 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,316 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1550 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,520 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1223 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,189 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 2026 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,182 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,025 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1795 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,297 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1785 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,608 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1539 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,174 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 2141 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,789 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,171 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,626 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 3257 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,727 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,061 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,474 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1089 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,934 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1380 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,595 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1266 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,618 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 3226 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,924 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,128 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,805 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1311 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,048 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 2742 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,982 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,265 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 3892 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,854 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,577 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,921 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 2144 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,904 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,896 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,183 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 3305 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,523 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,391 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,941 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,863 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1342 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,069 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder Large duplicate set. size = 1073 INFO 2026-06-08 09:04:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,601 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1414 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,691 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1305 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,745 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1246 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,941 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1679 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,581 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,731 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1751 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,126 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,735 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1690 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,954 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 2946 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,530 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,811 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1084 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,729 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,726 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1707 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,204 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 2103 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,693 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,567 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1913 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,851 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,324 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1630 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,976 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,453 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1088 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,077 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1657 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,116 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1657 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,597 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 09:04:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,078 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1269 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,473 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,534 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1082 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,457 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 2132 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,186 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,341 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,308 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,334 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1228 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,474 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1016 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,541 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 09:04:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,680 INFO 2026-06-08 09:04:52 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:04:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:06:02 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:06:04 MarkDuplicates After generateDuplicateIndexes freeMemory: 203872448; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:06:04 MarkDuplicates Marking 316260184 records as duplicates. INFO 2026-06-08 09:06:05 MarkDuplicates Found 24279388 optical duplicate clusters. INFO 2026-06-08 09:06:05 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:06:26 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:21s. Time for last 10,000,000: 21s. Last read position: chr1:27,102,672 INFO 2026-06-08 09:06:47 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:42s. Time for last 10,000,000: 20s. Last read position: chr1:86,432,377 INFO 2026-06-08 09:07:08 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 20s. Last read position: chr1:146,078,241 INFO 2026-06-08 09:07:29 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 20s. Last read position: chr1:151,411,701 INFO 2026-06-08 09:07:49 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:44s. Time for last 10,000,000: 20s. Last read position: chr1:155,721,516 INFO 2026-06-08 09:08:10 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 21s. Last read position: chr1:180,092,762 INFO 2026-06-08 09:08:31 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 20s. Last read position: chr1:205,723,963 INFO 2026-06-08 09:08:52 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 21s. Last read position: chr2:10,789,751 INFO 2026-06-08 09:09:12 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:07s. Time for last 10,000,000: 20s. Last read position: chr2:39,265,233 INFO 2026-06-08 09:09:33 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 20s. Last read position: chr2:99,727,091 INFO 2026-06-08 09:09:54 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 20s. Last read position: chr2:170,996,656 INFO 2026-06-08 09:10:15 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:04:10s. Time for last 10,000,000: 20s. Last read position: chr2:215,370,343 INFO 2026-06-08 09:10:35 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:30s. Time for last 10,000,000: 20s. Last read position: chr2:215,414,837 INFO 2026-06-08 09:10:56 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 20s. Last read position: chr2:241,256,693 INFO 2026-06-08 09:11:17 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:05:12s. Time for last 10,000,000: 20s. Last read position: chr3:49,683,273 INFO 2026-06-08 09:11:38 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:05:33s. Time for last 10,000,000: 20s. Last read position: chr3:129,268,505 INFO 2026-06-08 09:11:58 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 20s. Last read position: chr4:2,663,246 INFO 2026-06-08 09:12:19 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 20s. Last read position: chr4:104,491,836 INFO 2026-06-08 09:12:40 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 20s. Last read position: chr5:35,089,599 INFO 2026-06-08 09:13:01 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 21s. Last read position: chr5:115,870,100 INFO 2026-06-08 09:13:22 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:07:17s. Time for last 10,000,000: 20s. Last read position: chr5:154,033,861 INFO 2026-06-08 09:13:43 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:07:38s. Time for last 10,000,000: 21s. Last read position: chr6:27,814,375 INFO 2026-06-08 09:14:05 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 21s. Last read position: chr6:44,247,159 INFO 2026-06-08 09:14:27 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:08:22s. Time for last 10,000,000: 21s. Last read position: chr6:152,011,653 INFO 2026-06-08 09:14:49 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 22s. Last read position: chr7:44,114,789 INFO 2026-06-08 09:15:10 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 21s. Last read position: chr7:94,420,558 INFO 2026-06-08 09:15:31 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:09:26s. Time for last 10,000,000: 21s. Last read position: chr7:143,862,862 INFO 2026-06-08 09:15:53 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 21s. Last read position: chr8:47,700,401 INFO 2026-06-08 09:16:14 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:10:09s. Time for last 10,000,000: 21s. Last read position: chr8:143,730,178 INFO 2026-06-08 09:16:36 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 21s. Last read position: chr9:89,338,463 INFO 2026-06-08 09:16:57 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 21s. Last read position: chr9:133,341,553 INFO 2026-06-08 09:17:18 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:11:13s. Time for last 10,000,000: 21s. Last read position: chr10:43,109,034 INFO 2026-06-08 09:17:40 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 21s. Last read position: chr10:102,149,934 INFO 2026-06-08 09:18:02 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 22s. Last read position: chr11:9,586,784 INFO 2026-06-08 09:18:23 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 20s. Last read position: chr11:62,522,381 INFO 2026-06-08 09:18:44 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:12:39s. Time for last 10,000,000: 20s. Last read position: chr11:67,397,294 INFO 2026-06-08 09:19:05 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 20s. Last read position: chr11:88,337,589 INFO 2026-06-08 09:19:26 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:13:21s. Time for last 10,000,000: 21s. Last read position: chr12:14,447,042 INFO 2026-06-08 09:19:49 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 22s. Last read position: chr12:56,088,850 INFO 2026-06-08 09:20:11 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:14:06s. Time for last 10,000,000: 22s. Last read position: chr12:109,209,192 INFO 2026-06-08 09:20:34 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:14:29s. Time for last 10,000,000: 22s. Last read position: chr13:48,256,314 INFO 2026-06-08 09:20:57 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 22s. Last read position: chr14:60,975,554 INFO 2026-06-08 09:21:18 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 21s. Last read position: chr14:105,742,341 INFO 2026-06-08 09:21:40 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 21s. Last read position: chr15:57,263,266 INFO 2026-06-08 09:22:01 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:15:56s. Time for last 10,000,000: 21s. Last read position: chr16:426,622 INFO 2026-06-08 09:22:23 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:16:18s. Time for last 10,000,000: 22s. Last read position: chr16:21,404,884 INFO 2026-06-08 09:22:45 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:16:40s. Time for last 10,000,000: 21s. Last read position: chr16:53,481,665 INFO 2026-06-08 09:23:06 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:17:01s. Time for last 10,000,000: 21s. Last read position: chr17:1,361,191 INFO 2026-06-08 09:23:29 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:17:24s. Time for last 10,000,000: 22s. Last read position: chr17:28,122,680 INFO 2026-06-08 09:23:51 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:17:46s. Time for last 10,000,000: 21s. Last read position: chr17:43,774,908 INFO 2026-06-08 09:24:12 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:18:07s. Time for last 10,000,000: 21s. Last read position: chr17:50,189,685