Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/afd9e5adf4029fe6dd9c25524bee53/aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/62ddbb8b9ad49bf03315241e923bd8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/3a851a4d8450274f6ecb0fca9f923e/aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/62ddbb8b9ad49bf03315241e923bd8/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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