File Info

Filename
aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/5da4b0f0dc5b55b097fe818cf33f1e/aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:36:13
                             Started mapping on |	Jun 08 07:38:12
                                    Finished on |	Jun 08 08:36:19
       Mapping speed, Million of reads per hour |	304.73

                          Number of input reads |	295160853
                      Average input read length |	253
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283494248
                        Uniquely mapped reads % |	96.05%
                          Average mapped length |	252.78
                       Number of splices: Total |	343903848
            Number of splices: Annotated (sjdb) |	340235928
                       Number of splices: GT/AG |	340562543
                       Number of splices: GC/AG |	2345447
                       Number of splices: AT/AC |	278377
               Number of splices: Non-canonical |	717481
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6175747
             % of reads mapped to multiple loci |	2.09%
        Number of reads mapped to too many loci |	311936
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	447153
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	2847481
                 % of reads unmapped: too short |	0.96%
                Number of reads unmapped: other |	304089
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3698077
                            % of chimeric reads |	1.25%