File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/9f114c6f716383c98cd2cd9f618174/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 289
  Pass (FILTER=PASS): 27 (9.3%)
  Fail (FILTER=FAIL): 262 (90.7%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 57
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 41
  confidence_below_min(low<high): 28
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 20
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 15
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 15
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 14
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 14
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 13
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 8
  confidence_below_min(medium<high);aih_curated_blacklist: 5
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 3

Breakdown by confidence:
  high: 27 pass, 4 fail (total: 31)
  low: 0 pass, 152 fail (total: 152)
  medium: 0 pass, 106 fail (total: 106)
Arriba filter: 289 rows -> 27 PASS; wrote aih-tih-sc-b93682-R1_B23WHYVLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-b93682-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-b93682-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt