File Info

Filename
aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/afd9e5adf4029fe6dd9c25524bee53/aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:37:10
                             Started mapping on |	Jun 08 07:39:14
                                    Finished on |	Jun 08 08:22:39
       Mapping speed, Million of reads per hour |	382.09

                          Number of input reads |	276483938
                      Average input read length |	234
                                    UNIQUE READS:
                   Uniquely mapped reads number |	261740879
                        Uniquely mapped reads % |	94.67%
                          Average mapped length |	233.61
                       Number of splices: Total |	280819751
            Number of splices: Annotated (sjdb) |	275917006
                       Number of splices: GT/AG |	277778881
                       Number of splices: GC/AG |	2143705
                       Number of splices: AT/AC |	241078
               Number of splices: Non-canonical |	656087
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.47
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8746406
             % of reads mapped to multiple loci |	3.16%
        Number of reads mapped to too many loci |	152205
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	518178
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	3006569
                 % of reads unmapped: too short |	1.09%
                Number of reads unmapped: other |	239074
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	4183739
                            % of chimeric reads |	1.51%