Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ac8592b5c90b809658a0ad998a8b4f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ac8592b5c90b809658a0ad998a8b4f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/e3a571a57d7f841f4942ce71aa6d5d/aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/863f1adb27f941c8ddc0b2692af28b/aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ODC1--TPO
starfusion
arriba
DNAJC8--CCDC171
starfusion
arriba
PSD3--DLC1
starfusion
arriba
TGFA--AP000550.3
starfusion
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
DMPK--TOMM40
starfusion
arriba
CHD1--MEF2C-AS1
starfusion
arriba
SPIRE1--APOBEC3D
starfusion
IGFL1P2--HIF3A
arriba
TVP23C--CDRT4
arriba
CTDP1--AC116361.1
arriba
CTDP1--AC091941.1
arriba
ZNF584--AC109635.2
arriba
COL8A1--CMSS1
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing ODC1--TPO:   0%|          | 0/15 [00:00<?, ?it/s]
Processing ODC1--TPO:   7%|▋         | 1/15 [00:00<00:01,  8.77it/s]
Processing DNAJC8--CCDC171:   7%|▋         | 1/15 [00:00<00:01,  8.77it/s]
Processing DNAJC8--CCDC171:  13%|█▎        | 2/15 [00:00<00:01,  9.12it/s]
Processing PSD3--DLC1:  13%|█▎        | 2/15 [00:00<00:01,  9.12it/s]     
Processing PSD3--DLC1:  20%|██        | 3/15 [00:00<00:01,  9.25it/s]
Processing TGFA--AP000550.3:  20%|██        | 3/15 [00:00<00:01,  9.25it/s]
Processing TGFA--AP000550.3:  27%|██▋       | 4/15 [00:00<00:01,  9.23it/s]
Processing TLK2--AC240565.1:  27%|██▋       | 4/15 [00:00<00:01,  9.23it/s]
Processing TLK2--AC240565.1:  33%|███▎      | 5/15 [00:00<00:01,  9.29it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 5/15 [00:00<00:01,  9.29it/s]
Processing TLK2P1--AC110079.1:  40%|████      | 6/15 [00:00<00:00,  9.33it/s]
Processing DMPK--TOMM40:  40%|████      | 6/15 [00:00<00:00,  9.33it/s]      
Processing DMPK--TOMM40:  47%|████▋     | 7/15 [00:00<00:00,  9.35it/s]
Processing CHD1--MEF2C-AS1:  47%|████▋     | 7/15 [00:00<00:00,  9.35it/s]
Processing CHD1--MEF2C-AS1:  53%|█████▎    | 8/15 [00:00<00:00,  9.37it/s]
Processing SPIRE1--APOBEC3D:  53%|█████▎    | 8/15 [00:00<00:00,  9.37it/s]
Processing SPIRE1--APOBEC3D:  60%|██████    | 9/15 [00:00<00:00,  9.38it/s]
Processing IGFL1P2--HIF3A:  60%|██████    | 9/15 [00:00<00:00,  9.38it/s]  
Processing IGFL1P2--HIF3A:  67%|██████▋   | 10/15 [00:01<00:00,  9.39it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 10/15 [00:01<00:00,  9.39it/s] 
Processing TVP23C--CDRT4:  73%|███████▎  | 11/15 [00:01<00:00,  9.39it/s]
Processing CTDP1--AC116361.1:  73%|███████▎  | 11/15 [00:01<00:00,  9.39it/s]
Processing CTDP1--AC116361.1:  80%|████████  | 12/15 [00:01<00:00,  9.40it/s]
Processing CTDP1--AC091941.1:  80%|████████  | 12/15 [00:01<00:00,  9.40it/s]
Processing CTDP1--AC091941.1:  87%|████████▋ | 13/15 [00:01<00:00,  9.40it/s]
Processing ZNF584--AC109635.2:  87%|████████▋ | 13/15 [00:01<00:00,  9.40it/s]
Processing ZNF584--AC109635.2:  93%|█████████▎| 14/15 [00:01<00:00,  9.40it/s]
Processing COL8A1--CMSS1:  93%|█████████▎| 14/15 [00:01<00:00,  9.40it/s]     
Processing COL8A1--CMSS1: 100%|██████████| 15/15 [00:01<00:00,  9.40it/s]
Processing COL8A1--CMSS1: 100%|██████████| 15/15 [00:01<00:00,  9.34it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory