File Info
- Filename
- aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/ac8592b5c90b809658a0ad998a8b4f/aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1.fusions.csv
- Size
- 3.7 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-f4e5c4-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| ODC1--TPO | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:10448121#chr2:1453694,reading-frame: .,type: inversion,split_reads1: 107,split_reads2: 212,discordant_mates: 2,coverage1: 386,coverage2: 2141,confidence: high | position: chr2:10448121:-#chr2:1453694:+,junction_reads: 332,spanning_reads: 2,ffmp: 1.9948 | |
| DNAJC8--CCDC171 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:28208342#chr9:15666163,reading-frame: in-frame,type: translocation,split_reads1: 20,split_reads2: 12,discordant_mates: 0,coverage1: 516,coverage2: 195,confidence: high | position: chr1:28208342:-#chr9:15666163:+,junction_reads: 33,spanning_reads: 0,ffmp: 0.1973 | |
| PSD3--DLC1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:18765449#chr8:13305302,reading-frame: in-frame,type: deletion,split_reads1: 12,split_reads2: 14,discordant_mates: 0,coverage1: 1381,coverage2: 233,confidence: high | position: chr8:18765449:-#chr8:13305302:-,junction_reads: 30,spanning_reads: 0,ffmp: 0.1793 | |
| TGFA--AP000550.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:70553728:-#chr22:21229138:-,junction_reads: 19,spanning_reads: 0,ffmp: 0.0374 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0216 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0741 | ||
| DMPK--TOMM40 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:45774949#chr19:44900730,reading-frame: out-of-frame,type: inversion,split_reads1: 6,split_reads2: 5,discordant_mates: 0,coverage1: 1578,coverage2: 443,confidence: high | position: chr19:45774949:-#chr19:44900730:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0777 | |
| CHD1--MEF2C-AS1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr5:98881076#chr5:88905209,reading-frame: out-of-frame,type: inversion,split_reads1: 12,split_reads2: 1,discordant_mates: 0,coverage1: 490,coverage2: 1,confidence: high | position: chr5:98881076:-#chr5:88905209:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0777 | |
| SPIRE1--APOBEC3D | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:12479699:-#chr22:39031694:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0269 | ||
| IGFL1P2--HIF3A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:46260672#chr19:46303898,reading-frame: .,type: deletion/read-through/3'-3',split_reads1: 13,split_reads2: 74,discordant_mates: 0,coverage1: 724,coverage2: 4397,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 11,split_reads2: 15,discordant_mates: 0,coverage1: 894,coverage2: 380,confidence: high | |
| CTDP1--AC116361.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:79736521#chr5:8056514,reading-frame: out-of-frame,type: translocation,split_reads1: 11,split_reads2: 2,discordant_mates: 0,coverage1: 1380,coverage2: 6,confidence: high | ||
| CTDP1--AC091941.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:79736521#chr5:8056514,reading-frame: out-of-frame,type: translocation,split_reads1: 11,split_reads2: 2,discordant_mates: 0,coverage1: 1380,coverage2: 6,confidence: high | ||
| ZNF584--AC109635.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:58401662#chr11:50170792,reading-frame: .,type: translocation/5'-5',split_reads1: 2,split_reads2: 11,discordant_mates: 0,coverage1: 17,coverage2: 49,confidence: high | ||
| COL8A1--CMSS1 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr3:99638664#chr3:100146973,reading-frame: .,type: deletion,split_reads1: 1,split_reads2: 9,discordant_mates: 0,coverage1: 7,coverage2: 955,confidence: high |
16 rows