Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/f74a8f8beb4fb046b22cd943e7e31c/aih-tih-sc-51d534-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/9a7fb4d568a6d2281d25ffaa129f9e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/9a7fb4d568a6d2281d25ffaa129f9e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/4a4faa6cf86b373aea832e5c896166/aih-tih-sc-51d534-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory