Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/41bd256dd217e5eedf55bf21c95fac/aih-tih-sc-63c8b4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/7ebf3766792ca4a9366efb157b3e5e/aih-tih-sc-63c8b4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4636d90a6d79e8736cf000ad883887/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4636d90a6d79e8736cf000ad883887/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory