File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/21d7737f7ba4c394f2dd9a3ae95cde/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (20260501_LH00995_0036_B23WHYVLT4)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/960cb2053d0a1eafa4eab88210c291/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/c46d3e4c293cc07ada7ef352547d9d/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/2d22da16ede31597189a9fa66646c5/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260501_LH00995_0036_B23WHYVLT4/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/2d22da16ede31597189a9fa66646c5/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/dc0fd3fd96dd139754d41e8c33b15f/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260501_LH00995_0036_B23WHYVLT4/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/21d7737f7ba4c394f2dd9a3ae95cde/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/960cb2053d0a1eafa4eab88210c291/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/2d22da16ede31597189a9fa66646c5/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/802a31f52e6ef2c2c096700cf34ea8/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/07e728669d6479bfab8f941ee186f7/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/c46d3e4c293cc07ada7ef352547d9d/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260501_LH00995_0036_B23WHYVLT4/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/802a31f52e6ef2c2c096700cf34ea8/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c1e645a1a0623241402cc177db6d45/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c1e645a1a0623241402cc177db6d45/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/c46d3e4c293cc07ada7ef352547d9d/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c1e645a1a0623241402cc177db6d45/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/dc0fd3fd96dd139754d41e8c33b15f/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/960cb2053d0a1eafa4eab88210c291/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/76701841e117531c6e14ceed7549f6/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/76701841e117531c6e14ceed7549f6/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/07e728669d6479bfab8f941ee186f7/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/07e728669d6479bfab8f941ee186f7/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/802a31f52e6ef2c2c096700cf34ea8/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/76701841e117531c6e14ceed7549f6/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/21d7737f7ba4c394f2dd9a3ae95cde/.command.run
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260501_LH00995_0036_B23WHYVLT4/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/dc0fd3fd96dd139754d41e8c33b15f/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated