File Info

Filename
aih-tih-sc-18a6f2-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/938abe7f19a8b6af90edbca74e3d06/aih-tih-sc-18a6f2-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:32:22
                             Started mapping on |	Jun 08 07:34:54
                                    Finished on |	Jun 08 08:10:26
       Mapping speed, Million of reads per hour |	326.15

                          Number of input reads |	193153107
                      Average input read length |	231
                                    UNIQUE READS:
                   Uniquely mapped reads number |	185002887
                        Uniquely mapped reads % |	95.78%
                          Average mapped length |	230.12
                       Number of splices: Total |	202401920
            Number of splices: Annotated (sjdb) |	199832856
                       Number of splices: GT/AG |	200705037
                       Number of splices: GC/AG |	1141071
                       Number of splices: AT/AC |	118200
               Number of splices: Non-canonical |	437612
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.47
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4311957
             % of reads mapped to multiple loci |	2.23%
        Number of reads mapped to too many loci |	161447
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	381017
       % of reads unmapped: too many mismatches |	0.20%
            Number of reads unmapped: too short |	1825197
                 % of reads unmapped: too short |	0.94%
                Number of reads unmapped: other |	155230
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2622497
                            % of chimeric reads |	1.36%