File Info

Filename
aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/c59cf5e82db2eb93d6775dee3e1856/aih-tih-sc-099ac4-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:40:30
                             Started mapping on |	Jun 08 07:42:37
                                    Finished on |	Jun 08 08:49:11
       Mapping speed, Million of reads per hour |	266.10

                          Number of input reads |	295225842
                      Average input read length |	256
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280897139
                        Uniquely mapped reads % |	95.15%
                          Average mapped length |	256.03
                       Number of splices: Total |	314709136
            Number of splices: Annotated (sjdb) |	309924513
                       Number of splices: GT/AG |	311566383
                       Number of splices: GC/AG |	2355984
                       Number of splices: AT/AC |	249315
               Number of splices: Non-canonical |	537454
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8108351
             % of reads mapped to multiple loci |	2.75%
        Number of reads mapped to too many loci |	547480
             % of reads mapped to too many loci |	0.19%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	702665
       % of reads unmapped: too many mismatches |	0.24%
            Number of reads unmapped: too short |	2906371
                 % of reads unmapped: too short |	0.98%
                Number of reads unmapped: other |	440289
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3773895
                            % of chimeric reads |	1.28%