File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/11d8d0df430bb5a413a6f5cad254c8/.command.out
Size
1.7 KB
Attempt
  AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 192
  Pass (FILTER=PASS): 16 (8.3%)
  Fail (FILTER=FAIL): 176 (91.7%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 9
  All 9 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 71
  confidence_below_min(low<high): 32
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 12
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 11
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 11
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 6
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
  total_reads_below_min(7.0<8.0): 2
  total_reads_below_min(3.0<8.0): 2
  confidence_below_min(medium<high);aih_curated_blacklist: 2
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
  confidence_below_min(low<high);aih_curated_blacklist: 2
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2

Breakdown by confidence:
  high: 16 pass, 6 fail (total: 22)
  low: 0 pass, 79 fail (total: 79)
  medium: 0 pass, 91 fail (total: 91)
Arriba filter: 192 rows -> 16 PASS; wrote aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt