File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/c044cc6b4b8422ba5176a0395cdd1b/.command.log
Size
7.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/c044cc6b4b8422ba5176a0395cdd1b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/c044cc6b4b8422ba5176a0395cdd1b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/b5195b4423d1a089923f8ba53ad259/aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/a64cb3befde3b0aa269c125cd065fb/aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/34 [00:00<?, ?it/s]PPP6R3--ZNF875
starfusion
arriba
AATF--NF1
starfusion
arriba
SHANK2--C17orf75
starfusion
arriba
SHANK2--WARS1P1
starfusion
TLK2P1--AC110079.1
starfusion
MYO1D--SBF2
starfusion
NOSIP--TADA2A
starfusion
AP2B1--PSMD11
starfusion
SYNRG--FLT3LG
starfusion
AC084809.1--IL4I1
starfusion
arriba
MYO1D--PEX12
starfusion
AGAP12P--FRMPD2
starfusion
HEATR6--ZNF573
starfusion
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGC3
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
STX16--NPEPL1
arriba
RAB11FIP4--ASIC2
arriba
CPT1A--SYCN
arriba
CPT1A--IFNL3P1
arriba
MAP3K11--FCGBP
arriba
AC015911.9--SLFN12L
arriba
KLRC4--KLRK1
arriba
SOCS7--TBC1D3H
arriba
SOCS7--RNU6-1192P
arriba

Processing PPP6R3--ZNF875:   0%|          | 0/34 [00:00<?, ?it/s]
Processing PPP6R3--ZNF875:   3%|▎         | 1/34 [00:00<00:03,  9.12it/s]
Processing AATF--NF1:   3%|▎         | 1/34 [00:00<00:03,  9.12it/s]     
Processing AATF--NF1:   6%|▌         | 2/34 [00:00<00:03,  9.37it/s]
Processing SHANK2--C17orf75:   6%|▌         | 2/34 [00:00<00:03,  9.37it/s]
Processing SHANK2--C17orf75:   9%|▉         | 3/34 [00:00<00:03,  9.21it/s]
Processing SHANK2--WARS1P1:   9%|▉         | 3/34 [00:00<00:03,  9.21it/s] 
Processing SHANK2--WARS1P1:  12%|█▏        | 4/34 [00:00<00:03,  9.29it/s]
Processing TLK2P1--AC110079.1:  12%|█▏        | 4/34 [00:00<00:03,  9.29it/s]
Processing TLK2P1--AC110079.1:  15%|█▍        | 5/34 [00:00<00:03,  9.39it/s]
Processing MYO1D--SBF2:  15%|█▍        | 5/34 [00:00<00:03,  9.39it/s]       
Processing MYO1D--SBF2:  18%|█▊        | 6/34 [00:00<00:02,  9.45it/s]
Processing NOSIP--TADA2A:  18%|█▊        | 6/34 [00:00<00:02,  9.45it/s]
Processing NOSIP--TADA2A:  21%|██        | 7/34 [00:00<00:02,  9.48it/s]
Processing AP2B1--PSMD11:  21%|██        | 7/34 [00:00<00:02,  9.48it/s]
Processing AP2B1--PSMD11:  24%|██▎       | 8/34 [00:00<00:02,  9.46it/s]
Processing SYNRG--FLT3LG:  24%|██▎       | 8/34 [00:00<00:02,  9.46it/s]
Processing SYNRG--FLT3LG:  26%|██▋       | 9/34 [00:00<00:02,  9.49it/s]
Processing AC084809.1--IL4I1:  26%|██▋       | 9/34 [00:00<00:02,  9.49it/s]
Processing AC084809.1--IL4I1:  29%|██▉       | 10/34 [00:01<00:02,  9.51it/s]
Processing MYO1D--PEX12:  29%|██▉       | 10/34 [00:01<00:02,  9.51it/s]     
Processing MYO1D--PEX12:  32%|███▏      | 11/34 [00:01<00:02,  9.21it/s]
Processing AGAP12P--FRMPD2:  32%|███▏      | 11/34 [00:01<00:02,  9.21it/s]
Processing AGAP12P--FRMPD2:  35%|███▌      | 12/34 [00:01<00:02,  9.31it/s]
Processing HEATR6--ZNF573:  35%|███▌      | 12/34 [00:01<00:02,  9.31it/s] 
Processing HEATR6--ZNF573:  38%|███▊      | 13/34 [00:01<00:02,  9.38it/s]
Processing PCDHGB2--PCDHGA8:  38%|███▊      | 13/34 [00:01<00:02,  9.38it/s]
Processing PCDHGB2--PCDHGA8:  41%|████      | 14/34 [00:01<00:02,  9.43it/s]
Processing PCDHGB2--PCDHGA10:  41%|████      | 14/34 [00:01<00:02,  9.43it/s]
Processing PCDHGB2--PCDHGA10:  44%|████▍     | 15/34 [00:01<00:02,  9.46it/s]
Processing PCDHGB2--PCDHGA11:  44%|████▍     | 15/34 [00:01<00:02,  9.46it/s]
Processing PCDHGB2--PCDHGA11:  47%|████▋     | 16/34 [00:01<00:01,  9.37it/s]
Processing PCDHGB2--PCDHGC5:  47%|████▋     | 16/34 [00:01<00:01,  9.37it/s] 
Processing PCDHGB2--PCDHGC5:  50%|█████     | 17/34 [00:01<00:01,  9.43it/s]
Processing PCDHGB2--PCDHGB6:  50%|█████     | 17/34 [00:01<00:01,  9.43it/s]
Processing PCDHGB2--PCDHGB6:  53%|█████▎    | 18/34 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGC4:  53%|█████▎    | 18/34 [00:01<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGC4:  56%|█████▌    | 19/34 [00:02<00:01,  9.48it/s]
Processing PCDHGB2--PCDHGA9:  56%|█████▌    | 19/34 [00:02<00:01,  9.48it/s]
Processing PCDHGB2--PCDHGA9:  59%|█████▉    | 20/34 [00:02<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGA12:  59%|█████▉    | 20/34 [00:02<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGA12:  62%|██████▏   | 21/34 [00:02<00:01,  9.35it/s]
Processing PCDHGB2--PCDHGB7:  62%|██████▏   | 21/34 [00:02<00:01,  9.35it/s] 
Processing PCDHGB2--PCDHGB7:  65%|██████▍   | 22/34 [00:02<00:01,  9.41it/s]
Processing PCDHGB2--PCDHGC3:  65%|██████▍   | 22/34 [00:02<00:01,  9.41it/s]
Processing PCDHGB2--PCDHGC3:  68%|██████▊   | 23/34 [00:02<00:01,  9.46it/s]
Processing TVP23C--CDRT4:  68%|██████▊   | 23/34 [00:02<00:01,  9.46it/s]   
Processing TVP23C--CDRT4:  71%|███████   | 24/34 [00:02<00:01,  9.50it/s]
Processing AC092807.3--DDAH1:  71%|███████   | 24/34 [00:02<00:01,  9.50it/s]
Processing AC092807.3--DDAH1:  74%|███████▎  | 25/34 [00:02<00:00,  9.51it/s]
Processing STX16--NPEPL1:  74%|███████▎  | 25/34 [00:02<00:00,  9.51it/s]    
Processing STX16--NPEPL1:  76%|███████▋  | 26/34 [00:02<00:00,  9.53it/s]
Processing RAB11FIP4--ASIC2:  76%|███████▋  | 26/34 [00:02<00:00,  9.53it/s]
Processing RAB11FIP4--ASIC2:  79%|███████▉  | 27/34 [00:02<00:00,  9.54it/s]
Processing CPT1A--SYCN:  79%|███████▉  | 27/34 [00:02<00:00,  9.54it/s]     
Processing CPT1A--SYCN:  82%|████████▏ | 28/34 [00:02<00:00,  9.54it/s]
Processing CPT1A--IFNL3P1:  82%|████████▏ | 28/34 [00:02<00:00,  9.54it/s]
Processing CPT1A--IFNL3P1:  85%|████████▌ | 29/34 [00:03<00:00,  9.55it/s]
Processing MAP3K11--FCGBP:  85%|████████▌ | 29/34 [00:03<00:00,  9.55it/s]
Processing MAP3K11--FCGBP:  88%|████████▊ | 30/34 [00:03<00:00,  9.56it/s]
Processing AC015911.9--SLFN12L:  88%|████████▊ | 30/34 [00:03<00:00,  9.56it/s]
Processing AC015911.9--SLFN12L:  91%|█████████ | 31/34 [00:03<00:00,  9.56it/s]
Processing KLRC4--KLRK1:  91%|█████████ | 31/34 [00:03<00:00,  9.56it/s]       
Processing KLRC4--KLRK1:  94%|█████████▍| 32/34 [00:03<00:00,  9.56it/s]
Processing SOCS7--TBC1D3H:  94%|█████████▍| 32/34 [00:03<00:00,  9.56it/s]
Processing SOCS7--TBC1D3H:  97%|█████████▋| 33/34 [00:03<00:00,  9.56it/s]
Processing SOCS7--RNU6-1192P:  97%|█████████▋| 33/34 [00:03<00:00,  9.56it/s]
Processing SOCS7--RNU6-1192P: 100%|██████████| 34/34 [00:03<00:00,  9.56it/s]
Processing SOCS7--RNU6-1192P: 100%|██████████| 34/34 [00:03<00:00,  9.46it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory