File Info
- Filename
- aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/c044cc6b4b8422ba5176a0395cdd1b/aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1.fusions.csv
- Size
- 7.9 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-4f4d6e-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| PPP6R3--ZNF875 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:68460827#chr19:37347777,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 121,discordant_mates: 0,coverage1: 45,coverage2: 6843,confidence: high | position: chr11:68460827:+#chr19:37347777:+,junction_reads: 129,spanning_reads: 0,ffmp: 0.5979 | |
| AATF--NF1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:37031685#chr17:31230842,reading-frame: in-frame,type: duplication,split_reads1: 14,split_reads2: 9,discordant_mates: 1,coverage1: 1186,coverage2: 3383,confidence: high | position: chr17:37031685:+#chr17:31230842:+,junction_reads: 26,spanning_reads: 1,ffmp: 0.1239 | |
| SHANK2--C17orf75 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:71147120#chr17:32335442,reading-frame: in-frame,type: translocation,split_reads1: 8,split_reads2: 14,discordant_mates: 0,coverage1: 2656,coverage2: 469,confidence: high | position: chr11:71147120:-#chr17:32335442:-,junction_reads: 23,spanning_reads: 0,ffmp: 0.1066 | |
| SHANK2--WARS1P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:71109941:-#chr11:59255455:+,junction_reads: 22,spanning_reads: 2,ffmp: 0.1113 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 19,spanning_reads: 0,ffmp: 0.0862 | ||
| MYO1D--SBF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:32876778:-#chr11:10193987:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0695 | ||
| NOSIP--TADA2A | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:49558897:-#chr17:37423509:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.0649 | ||
| AP2B1--PSMD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35641975:+#chr17:32446945:+,junction_reads: 13,spanning_reads: 0,ffmp: 0.0603 | ||
| SYNRG--FLT3LG | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:37568791:-#chr19:49478909:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0556 | ||
| AC084809.1--IL4I1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:32878635#chr19:49896053,reading-frame: .,type: translocation,split_reads1: 4,split_reads2: 7,discordant_mates: 0,coverage1: 6,coverage2: 395,confidence: high | position: chr17:32878635:+#chr19:49896053:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.051 | |
| MYO1D--PEX12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:32876778:-#chr17:35577591:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0464 | ||
| AGAP12P--FRMPD2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:48025897:-#chr10:48181008:-,junction_reads: 9,spanning_reads: 1,ffmp: 0.0459 | ||
| HEATR6--ZNF573 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:60055515#chr19:37740194,reading-frame: out-of-frame,type: translocation,split_reads1: 7,split_reads2: 1,discordant_mates: 0,coverage1: 275,coverage2: 493,confidence: high | position: chr17:60055515:-#chr19:37740194:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.0371 | |
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 113,split_reads2: 23,discordant_mates: 0,coverage1: 505,coverage2: 6622,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 49,split_reads2: 73,discordant_mates: 1,coverage1: 593,coverage2: 504,confidence: high | |
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 41,split_reads2: 71,discordant_mates: 1,coverage1: 204,coverage2: 924,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 50,split_reads2: 39,discordant_mates: 3,coverage1: 1299,coverage2: 225,confidence: high | ||
| RAB11FIP4--ASIC2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr17:31488272#chr17:33181642,reading-frame: out-of-frame,type: deletion/5'-5',split_reads1: 18,split_reads2: 26,discordant_mates: 0,coverage1: 751,coverage2: 43,confidence: high | |
| CPT1A--SYCN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:68807467#chr19:39207701,reading-frame: out-of-frame,type: translocation,split_reads1: 23,split_reads2: 8,discordant_mates: 0,coverage1: 625,coverage2: 10,confidence: high | ||
| CPT1A--IFNL3P1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:68807467#chr19:39207701,reading-frame: out-of-frame,type: translocation,split_reads1: 23,split_reads2: 8,discordant_mates: 0,coverage1: 625,coverage2: 10,confidence: high | ||
| MAP3K11--FCGBP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:65605761#chr19:39866549,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 19,split_reads2: 7,discordant_mates: 0,coverage1: 1315,coverage2: 15,confidence: high | ||
| AC015911.9--SLFN12L | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:35522279#chr17:35480195,reading-frame: .,type: deletion/read-through,split_reads1: 8,split_reads2: 16,discordant_mates: 2,coverage1: 369,coverage2: 224,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 10,split_reads2: 2,discordant_mates: 0,coverage1: 79,coverage2: 172,confidence: high | ||
| SOCS7--TBC1D3H | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:38353032#chr17:36389040,reading-frame: out-of-frame,type: duplication,split_reads1: 7,split_reads2: 2,discordant_mates: 0,coverage1: 454,coverage2: 3,confidence: high | ||
| SOCS7--RNU6-1192P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:38353032#chr17:36389040,reading-frame: out-of-frame,type: duplication,split_reads1: 7,split_reads2: 2,discordant_mates: 0,coverage1: 454,coverage2: 3,confidence: high |
35 rows