File Info

Filename
aih-tih-sc-1d9134-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/c9d89dceb8ea0fc52bb470c68ae975/aih-tih-sc-1d9134-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:34:13
                             Started mapping on |	Jun 08 07:36:16
                                    Finished on |	Jun 08 08:24:31
       Mapping speed, Million of reads per hour |	295.67

                          Number of input reads |	237764079
                      Average input read length |	250
                                    UNIQUE READS:
                   Uniquely mapped reads number |	228487811
                        Uniquely mapped reads % |	96.10%
                          Average mapped length |	249.69
                       Number of splices: Total |	295249704
            Number of splices: Annotated (sjdb) |	292706087
                       Number of splices: GT/AG |	292818690
                       Number of splices: GC/AG |	1630781
                       Number of splices: AT/AC |	182856
               Number of splices: Non-canonical |	617377
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4976767
             % of reads mapped to multiple loci |	2.09%
        Number of reads mapped to too many loci |	221659
             % of reads mapped to too many loci |	0.09%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	354705
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	2188469
                 % of reads unmapped: too short |	0.92%
                Number of reads unmapped: other |	203993
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2971412
                            % of chimeric reads |	1.25%