File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/ffe28c4c767d06658016cb3d69264c/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-1ba302-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/359c8b960e45652f48b6be20cbb7f1/aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/ffe28c4c767d06658016cb3d69264c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/ffd79a928055941e334b80b2b6d101/aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/ffe28c4c767d06658016cb3d69264c/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 359704434
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	359704434
Known Splicing Events:	356977534
Partial Novel Splicing Events:	1780314
Novel Splicing Events:	867842
Filtered Splicing Events:	78744

Total splicing  Junctions:	555869
Known Splicing Junctions:	284989
Partial Novel Splicing Junctions:	169043
Novel Splicing Junctions:	101837

===================================================================
Create BED file ...
Create Interact file ...