Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d4e748c570fc5361d6ed1cefa6a876/aih-tih-sc-2f84cc-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/b7aa213aaac6f05ede51403c15a42d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/b7aa213aaac6f05ede51403c15a42d/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
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Processed 202000000 records
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Processed 204000000 records
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Processed 209000000 records
Processed 210000000 records
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Processed 215000000 records
Processed 216000000 records
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Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
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Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
paired = 120211955
unpaired = 2405607
MERGED PAIRED END READS = 120211955
MATES PROCESSED = 242829517
TOTAL READS = 122617562
DISTINCT READS = 5.34749e+07
DISTINCT COUNTS = 654
MAX COUNT = 560011
COUNTS OF 1 = 2.5803e+07
MAX TERMS = 100
OBSERVED COUNTS (560012)
1 25803010
2 12721752
3 6600329
4 3469609
5 1871185
6 1046842
7 616001
8 381107
9 248306
10 167101
11 116419
12 84295
13 62379
14 47017
15 36499
16 28470
17 22968
18 18638
19 15303
20 12908
21 10919
22 9346
23 7907
24 6818
25 5975
26 5233
27 4528
28 4124
29 3698
30 3237
31 2942
32 2597
33 2312
34 2170
35 1963
36 1707
37 1592
38 1477
39 1427
40 1318
41 1215
42 1038
43 971
44 935
45 808
46 815
47 802
48 728
49 637
50 642
51 588
52 558
53 517
54 467
55 436
56 413
57 443
58 394
59 363
60 333
61 346
62 293
63 320
64 289
65 262
66 261
67 235
68 203
69 236
70 199
71 196
72 208
73 187
74 166
75 168
76 165
77 158
78 140
79 152
80 146
81 145
82 135
83 157
84 149
85 122
86 104
87 123
88 99
89 123
90 101
91 110
92 100
93 95
94 80
95 92
96 91
97 75
98 74
99 64
100 77
101 75
102 66
103 74
104 63
105 62
106 58
107 58
108 59
109 68
110 55
111 49
112 43
113 62
114 56
115 53
116 43
117 51
118 43
119 44
120 47
121 38
122 59
123 33
124 40
125 45
126 38
127 42
128 30
129 36
130 36
131 32
132 28
133 36
134 20
135 28
136 29
137 32
138 36
139 31
140 26
141 25
142 27
143 28
144 25
145 25
146 19
147 25
148 23
149 19
150 16
151 25
152 19
153 22
154 21
155 19
156 22
157 22
158 25
159 19
160 20
161 18
162 15
163 22
164 10
165 23
166 17
167 22
168 27
169 18
170 13
171 21
172 16
173 12
174 27
175 14
176 14
177 14
178 11
179 14
180 21
181 6
182 13
183 10
184 16
185 19
186 23
187 20
188 10
189 11
190 15
191 7
192 14
193 8
194 10
195 11
196 13
197 9
198 8
199 3
200 6
201 11
202 10
203 10
204 14
205 11
206 7
207 6
208 11
209 6
210 9
211 5
212 7
213 5
214 9
215 12
216 8
217 8
218 11
219 4
220 8
221 11
222 5
223 17
224 10
225 4
226 10
227 7
228 4
229 5
230 6
231 2
232 6
233 7
234 5
235 8
236 5
237 2
238 8
239 2
240 1
241 2
242 3
243 8
244 5
245 5
246 4
247 2
248 6
249 3
250 3
251 5
252 5
253 8
254 3
255 4
256 4
257 4
258 5
259 4
260 6
261 3
262 7
263 4
264 9
265 8
266 6
267 3
268 9
269 5
270 4
271 2
272 2
273 6
274 1
275 5
276 4
277 7
278 9
279 5
280 3
281 3
282 7
283 5
284 4
285 2
286 7
287 2
288 4
289 3
290 3
291 4
292 1
293 2
294 3
295 3
296 7
297 1
298 4
299 3
300 2
301 2
302 3
303 7
304 2
305 3
306 3
307 3
308 4
309 1
310 8
311 2
312 4
313 4
314 2
315 2
316 2
317 5
318 3
319 1
320 3
321 2
322 8
323 3
324 2
325 4
326 1
327 3
328 3
330 1
331 4
332 2
333 1
334 2
335 2
336 3
338 3
339 2
341 5
342 5
343 2
344 1
345 1
346 3
347 2
348 1
351 3
352 2
353 2
354 6
355 5
356 1
357 2
358 1
359 2
361 1
362 7
363 2
364 1
365 3
366 2
367 2
369 1
370 1
371 1
372 1
373 1
375 2
376 8
377 2
380 2
381 1
383 1
386 1
388 2
390 1
392 2
393 2
394 2
395 2
396 1
397 3
398 3
400 3
401 1
403 3
404 1
405 1
409 5
410 1
412 1
413 2
414 3
415 2
416 1
417 2
418 1
419 2
421 1
422 3
424 1
426 3
427 3
429 1
431 2
432 1
433 1
435 1
436 1
438 1
441 1
442 3
443 2
445 1
446 1
447 1
448 1
449 3
450 2
451 2
453 1
455 1
456 1
457 1
458 4
460 1
461 1
462 2
463 1
467 1
469 2
472 3
474 1
475 2
476 1
481 1
482 1
485 2
488 1
490 2
492 1
493 1
495 1
498 1
502 1
503 2
505 1
509 1
510 3
512 1
513 1
519 2
522 2
525 1
529 1
530 1
531 1
535 1
537 1
538 1
540 1
545 1
547 1
548 1
549 1
553 1
554 1
557 1
558 1
561 1
567 2
569 1
570 1
574 1
576 2
578 1
581 3
582 1
587 2
588 1
596 1
598 1
601 1
603 1
607 1
609 1
610 1
613 1
614 3
615 1
616 1
618 2
619 1
622 1
624 1
626 1
630 1
637 1
639 2
640 1
642 1
643 1
645 1
651 1
658 1
659 1
661 1
662 1
670 1
671 1
672 1
676 1
679 1
680 1
682 1
685 1
686 2
692 1
697 1
702 1
706 1
707 1
708 1
710 1
711 1
712 1
717 1
721 1
723 1
724 1
725 1
729 1
731 1
732 1
734 2
735 1
736 1
737 1
738 1
742 1
749 1
753 1
759 1
760 1
763 1
765 1
771 1
772 1
774 1
775 2
776 1
778 2
781 1
785 1
789 1
790 1
791 1
792 1
795 1
803 1
808 1
809 1
811 1
813 1
820 1
825 2
831 2
841 1
848 1
851 1
852 1
853 1
867 1
869 1
870 1
876 1
883 1
884 1
888 1
891 2
893 2
894 1
895 1
900 1
907 1
919 1
920 1
928 1
930 1
935 1
936 2
938 1
945 1
947 1
953 1
957 1
966 1
991 1
1012 1
1015 1
1021 1
1031 1
1035 1
1038 1
1039 1
1041 1
1055 1
1069 1
1088 1
1089 1
1093 1
1098 1
1104 1
1112 1
1121 1
1130 1
1143 1
1164 1
1209 1
1241 1
1243 1
1250 1
1324 1
1334 1
1349 1
1361 1
1404 1
1418 1
1423 1
1426 1
1435 1
1451 1
1453 1
1484 1
1531 1
1553 1
1557 1
1630 1
1658 1
1771 1
1801 1
1825 1
1941 1
2011 1
2085 1
2091 1
2358 1
2685 1
2785 1
2917 1
3492 1
6069 1
8852 1
28008 1
560011 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_............_...._......__........._...._.__................_.._..._.__
_..........._._....__.___........_._...._._._.___.._.._.._...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]