Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/8648f8649363382f4920e6d83d83cf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1fffb548fa4e10c9ec207fcbade05d/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/8648f8649363382f4920e6d83d83cf/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/774463dd25704cd3f82a356f79188a/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (10990124) splicing reads. 245179 splicing junctions. 183868 known splicing junctions. 61311 novel splicing junctions.
sampling 10% (21980249) splicing reads. 296976 splicing junctions. 197326 known splicing junctions. 99650 novel splicing junctions.
sampling 15% (32970374) splicing reads. 334474 splicing junctions. 204741 known splicing junctions. 129733 novel splicing junctions.
sampling 20% (43960499) splicing reads. 363820 splicing junctions. 209485 known splicing junctions. 154335 novel splicing junctions.
sampling 25% (54950624) splicing reads. 388214 splicing junctions. 213097 known splicing junctions. 175117 novel splicing junctions.
sampling 30% (65940748) splicing reads. 408705 splicing junctions. 215843 known splicing junctions. 192862 novel splicing junctions.
sampling 35% (76930873) splicing reads. 426488 splicing junctions. 218022 known splicing junctions. 208466 novel splicing junctions.
sampling 40% (87920998) splicing reads. 441896 splicing junctions. 219814 known splicing junctions. 222082 novel splicing junctions.
sampling 45% (98911123) splicing reads. 455543 splicing junctions. 221299 known splicing junctions. 234244 novel splicing junctions.
sampling 50% (109901248) splicing reads. 467477 splicing junctions. 222544 known splicing junctions. 244933 novel splicing junctions.
sampling 55% (120891372) splicing reads. 477917 splicing junctions. 223622 known splicing junctions. 254295 novel splicing junctions.
sampling 60% (131881497) splicing reads. 487279 splicing junctions. 224503 known splicing junctions. 262776 novel splicing junctions.
sampling 65% (142871622) splicing reads. 495481 splicing junctions. 225316 known splicing junctions. 270165 novel splicing junctions.
sampling 70% (153861747) splicing reads. 502948 splicing junctions. 226010 known splicing junctions. 276938 novel splicing junctions.
sampling 75% (164851872) splicing reads. 509334 splicing junctions. 226579 known splicing junctions. 282755 novel splicing junctions.
sampling 80% (175841996) splicing reads. 514991 splicing junctions. 227086 known splicing junctions. 287905 novel splicing junctions.
sampling 85% (186832121) splicing reads. 519891 splicing junctions. 227501 known splicing junctions. 292390 novel splicing junctions.
sampling 90% (197822246) splicing reads. 523918 splicing junctions. 227860 known splicing junctions. 296058 novel splicing junctions.
sampling 95% (208812371) splicing reads. 527429 splicing junctions. 228155 known splicing junctions. 299274 novel splicing junctions.
sampling 100% (219802496) splicing reads. 530292 splicing junctions. 228412 known splicing junctions. 301880 novel splicing junctions.
null device 
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