File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/62b47afb8aa84cad7a1587a3019fde/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 12 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 266
  Pass (FILTER=PASS): 41 (15.4%)
  Fail (FILTER=FAIL): 225 (84.6%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 12
  All 12 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 68
  confidence_below_min(low<high): 29
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 26
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 21
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 15
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 12
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 8
  confidence_below_min(medium<high);aih_curated_blacklist: 4
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2

Breakdown by confidence:
  high: 41 pass, 4 fail (total: 45)
  low: 0 pass, 119 fail (total: 119)
  medium: 0 pass, 102 fail (total: 102)
Arriba filter: 266 rows -> 41 PASS; wrote aih-tih-sc-934f55-R1_B23WHYVLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-934f55-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-934f55-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt