AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 391
Pass (FILTER=PASS): 58 (14.8%)
Fail (FILTER=FAIL): 333 (85.2%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 9
All 9 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 60
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 58
confidence_below_min(low<high): 39
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 28
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 19
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 18
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 17
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 15
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 14
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 12
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 11
confidence_below_min(medium<high);aih_curated_blacklist: 6
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 5
Breakdown by confidence:
high: 58 pass, 8 fail (total: 66)
low: 0 pass, 178 fail (total: 178)
medium: 0 pass, 147 fail (total: 147)
Arriba filter: 391 rows -> 58 PASS; wrote FFPE_HD789_01_RNA_13_B23WHYVLT4_1.arriba.fusions.filtered.tsv and FFPE_HD789_01_RNA_13_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_HD789_01_RNA_13_B23WHYVLT4_1.arriba.fusions.filter_summary.txt