Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/ff6f471a2567bd706601567e3178a2/aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/d01c59f31cbc545a07fa7cad6f31d9/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/d01c59f31cbc545a07fa7cad6f31d9/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-027d27-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-027d27-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:27:04.612 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:27:04 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-027d27-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-027d27-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:27:04 GMT 2026] Executing as ?@nf-02d01c59f31cbc545a07fa7cad6f31d9-eeeab-pxdbk on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:27:04 MarkDuplicates Start of doWork freeMemory: 105493240; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:27:04 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:27:04 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 4s. Last read position: chr1:1,390,222
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 3279 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 4s. Last read position: chr1:3,781,557
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 6316 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 3s. Last read position: chr1:8,361,767
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 9256 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:27:20 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:11,069,652
INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 12083 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 08:27:23 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 3s. Last read position: chr1:12,568,282
INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 15043 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:27:26 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:16,569,208
INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 17465 as yet unmatched pairs. 366 records in RAM.
INFO 2026-06-08 08:27:29 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:19,164,946
INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 19890 as yet unmatched pairs. 450 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 3s. Last read position: chr1:21,823,349
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 22666 as yet unmatched pairs. 546 records in RAM.
INFO 2026-06-08 08:27:35 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:22,637,665
INFO 2026-06-08 08:27:35 MarkDuplicates Tracking 25141 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 08:27:37 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:24,660,755
INFO 2026-06-08 08:27:37 MarkDuplicates Tracking 28048 as yet unmatched pairs. 348 records in RAM.
INFO 2026-06-08 08:27:41 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 3s. Last read position: chr1:26,863,606
INFO 2026-06-08 08:27:41 MarkDuplicates Tracking 30475 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-08 08:27:44 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:29,149,200
INFO 2026-06-08 08:27:44 MarkDuplicates Tracking 33147 as yet unmatched pairs. 305 records in RAM.
INFO 2026-06-08 08:27:47 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 3s. Last read position: chr1:32,216,461
INFO 2026-06-08 08:27:47 MarkDuplicates Tracking 35890 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:27:50 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:35,192,301
INFO 2026-06-08 08:27:50 MarkDuplicates Tracking 39146 as yet unmatched pairs. 668 records in RAM.
INFO 2026-06-08 08:27:52 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:37,997,791
INFO 2026-06-08 08:27:52 MarkDuplicates Tracking 41223 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:27:55 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:39,564,750
INFO 2026-06-08 08:27:55 MarkDuplicates Tracking 44004 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-08 08:27:57 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:43,422,779
INFO 2026-06-08 08:27:57 MarkDuplicates Tracking 46780 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 08:28:00 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:44,778,601
INFO 2026-06-08 08:28:00 MarkDuplicates Tracking 49541 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:47,067,501
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 52167 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:28:04 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:54,043,488
INFO 2026-06-08 08:28:04 MarkDuplicates Tracking 55482 as yet unmatched pairs. 578 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:62,834,774
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 57563 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:77,969,942
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 59964 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:92,837,529
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 64218 as yet unmatched pairs. 1702 records in RAM.
INFO 2026-06-08 08:28:14 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:108,940,095
INFO 2026-06-08 08:28:14 MarkDuplicates Tracking 65131 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:28:16 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:109,345,792
INFO 2026-06-08 08:28:16 MarkDuplicates Tracking 67868 as yet unmatched pairs. 352 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:112,528,129
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 70475 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:28:21 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:114,725,258
INFO 2026-06-08 08:28:21 MarkDuplicates Tracking 73641 as yet unmatched pairs. 628 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:119,917,697
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 78072 as yet unmatched pairs. 2564 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:120,793,356
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 77886 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:145,977,137
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 79353 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:147,276,244
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 80593 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:148,953,324
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 81802 as yet unmatched pairs. 318 records in RAM.
INFO 2026-06-08 08:28:31 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,208
INFO 2026-06-08 08:28:31 MarkDuplicates Tracking 83333 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:150,796,809
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 85220 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:152,215,855
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 87937 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:154,170,459
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 96303 as yet unmatched pairs. 6060 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:154,966,465
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 92936 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:155,191,986
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 97110 as yet unmatched pairs. 2113 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:155,917,585
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 97470 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:156,592,180
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 100711 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:160,545,192
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 103288 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:167,936,963
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 105999 as yet unmatched pairs. 260 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:173,853,538
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 108050 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 3s. Last read position: chr1:182,879,292
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 110864 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:28:57 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:186,346,245
INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 113956 as yet unmatched pairs. 707 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:201,490,292
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 116550 as yet unmatched pairs. 855 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:203,797,734
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 118322 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:206,097,732
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 124511 as yet unmatched pairs. 3889 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:211,353,242
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 123709 as yet unmatched pairs. 435 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:223,625,797
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 125605 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:226,736,964
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 127906 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:228,687,420
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 131006 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:29:12 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:235,450,213
INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 134247 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr1:244,864,144
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 137042 as yet unmatched pairs. 705 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 3s. Last read position: chr2:8,818,758
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 139354 as yet unmatched pairs. 138528 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:17,718,147
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 141938 as yet unmatched pairs. 141091 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:25,246,677
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 144581 as yet unmatched pairs. 143723 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:27,442,726
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 147545 as yet unmatched pairs. 146672 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:32,465,070
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 150640 as yet unmatched pairs. 149749 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,263
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 218097 as yet unmatched pairs. 145368 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 860437 as yet unmatched pairs. 108223 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 1196344 as yet unmatched pairs. 89214 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 1199770 as yet unmatched pairs. 89024 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:37,228,854
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 1277375 as yet unmatched pairs. 83398 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,620
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 1275383 as yet unmatched pairs. 81406 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:48,581,720
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 1271901 as yet unmatched pairs. 77914 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:55,374,815
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 1269436 as yet unmatched pairs. 75431 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:64,553,278
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 1266837 as yet unmatched pairs. 72809 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:70,991,870
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 1264098 as yet unmatched pairs. 70061 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:74,367,995
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 1261681 as yet unmatched pairs. 67633 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:85,558,391
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 1258808 as yet unmatched pairs. 64746 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,372
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 1258622 as yet unmatched pairs. 64547 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:97,142,763
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 1254981 as yet unmatched pairs. 60900 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:101,004,246
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 1258108 as yet unmatched pairs. 64006 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:107,872,363
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 1250863 as yet unmatched pairs. 56740 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,006
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 1249749 as yet unmatched pairs. 55614 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,003
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 1251840 as yet unmatched pairs. 57700 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:110,534,593
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 1246655 as yet unmatched pairs. 52507 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:112,388,493
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 1245884 as yet unmatched pairs. 51732 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:113,217,544
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 1249654 as yet unmatched pairs. 55495 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:113,235,431
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 1243083 as yet unmatched pairs. 48916 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:117,995,474
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 1239527 as yet unmatched pairs. 45325 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:130,120,301
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 1237890 as yet unmatched pairs. 43670 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,139
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 1235278 as yet unmatched pairs. 41048 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:152,718,769
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 1232607 as yet unmatched pairs. 38362 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:168,075,218
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 1230123 as yet unmatched pairs. 35868 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:174,572,285
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 1227698 as yet unmatched pairs. 33427 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:181,928,179
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 1225515 as yet unmatched pairs. 31240 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:189,039,470
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 1222684 as yet unmatched pairs. 28404 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr2:197,418,511
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 1220473 as yet unmatched pairs. 26181 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:203,278,573
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 1217716 as yet unmatched pairs. 23417 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:215,362,047
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 1217141 as yet unmatched pairs. 22833 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,005
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 1214060 as yet unmatched pairs. 19748 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:217,848,387
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 1210552 as yet unmatched pairs. 16212 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:219,236,063
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 1207769 as yet unmatched pairs. 13416 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:226,797,817
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 1204639 as yet unmatched pairs. 10253 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr2:231,712,837
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 1203843 as yet unmatched pairs. 9451 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr2:237,540,920
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 1201010 as yet unmatched pairs. 6613 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr2:241,127,042
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 1196630 as yet unmatched pairs. 2223 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,470
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 1194472 as yet unmatched pairs. 68927 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr3:12,070,805
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 1191202 as yet unmatched pairs. 65634 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:15,304,094
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 1188790 as yet unmatched pairs. 63206 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:33,014,101
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 1186432 as yet unmatched pairs. 60820 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr3:39,408,674
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 1185776 as yet unmatched pairs. 60155 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:42,664,339
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 1181587 as yet unmatched pairs. 55957 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr3:47,122,432
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 1179251 as yet unmatched pairs. 53606 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:48,420,014
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 1176579 as yet unmatched pairs. 50929 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:49,022,491
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 1173047 as yet unmatched pairs. 47396 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:49,687,761
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 1170251 as yet unmatched pairs. 44588 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:51,959,248
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 1167268 as yet unmatched pairs. 41574 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:52,524,586
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 1164530 as yet unmatched pairs. 38825 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:57,584,435
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 1161955 as yet unmatched pairs. 36241 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:67,498,228
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 1159406 as yet unmatched pairs. 33670 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 3s. Last read position: chr3:99,848,937
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 1157051 as yet unmatched pairs. 31304 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:112,548,575
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 1154925 as yet unmatched pairs. 29163 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:121,696,947
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 1152440 as yet unmatched pairs. 26664 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr3:124,737,900
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 1149567 as yet unmatched pairs. 23780 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:129,170,446
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 1147760 as yet unmatched pairs. 21960 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:134,188,845
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 1144017 as yet unmatched pairs. 18206 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr3:142,547,820
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 1141525 as yet unmatched pairs. 15707 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:156,678,032
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 1138991 as yet unmatched pairs. 13159 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:170,866,392
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 1137198 as yet unmatched pairs. 11345 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr3:184,143,496
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 1134090 as yet unmatched pairs. 8228 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr3:186,057,467
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 1131524 as yet unmatched pairs. 5657 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr3:193,614,731
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 1129024 as yet unmatched pairs. 3139 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:196,807,795
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 1127123 as yet unmatched pairs. 1229 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 3s. Last read position: chr4:1,171,812
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 1124085 as yet unmatched pairs. 41268 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:2,625,308
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 1120959 as yet unmatched pairs. 38136 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr4:6,287,163
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 1118573 as yet unmatched pairs. 35740 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:15,003,826
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 1115452 as yet unmatched pairs. 32600 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr4:25,819,821
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 1113436 as yet unmatched pairs. 30560 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr4:40,436,474
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 1110563 as yet unmatched pairs. 27674 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr4:55,080,015
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 1107975 as yet unmatched pairs. 25061 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr4:73,091,524
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 1105993 as yet unmatched pairs. 23058 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr4:79,977,653
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 1103055 as yet unmatched pairs. 20107 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr4:87,489,914
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 1100822 as yet unmatched pairs. 17864 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr4:99,948,156
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 1098144 as yet unmatched pairs. 15178 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr4:112,618,384
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 1095802 as yet unmatched pairs. 12824 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr4:122,934,274
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 1093735 as yet unmatched pairs. 10743 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr4:145,138,603
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 1091335 as yet unmatched pairs. 8333 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr4:153,270,388
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 1093165 as yet unmatched pairs. 10143 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr4:168,878,207
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 1086907 as yet unmatched pairs. 3877 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 3s. Last read position: chr4:186,153,650
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 1084014 as yet unmatched pairs. 962 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 5s. Last read position: chr5:6,599,904
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 1081309 as yet unmatched pairs. 64614 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 3s. Last read position: chr5:14,471,331
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 1079292 as yet unmatched pairs. 62589 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr5:34,656,453
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 1075904 as yet unmatched pairs. 59194 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr5:43,380,097
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 1073484 as yet unmatched pairs. 56751 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:62,651,798
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 1070938 as yet unmatched pairs. 54186 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:70,941,474
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 1069097 as yet unmatched pairs. 52335 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr5:75,426,371
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 1066978 as yet unmatched pairs. 50210 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:83,490,118
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 1064819 as yet unmatched pairs. 48014 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:96,730,778
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 1062399 as yet unmatched pairs. 45580 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:112,827,927
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 1059674 as yet unmatched pairs. 42829 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr5:128,182,894
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 1057476 as yet unmatched pairs. 40613 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:134,763,903
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 1054702 as yet unmatched pairs. 37807 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr5:138,812,264
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 1052788 as yet unmatched pairs. 35886 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr5:140,510,058
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 1049808 as yet unmatched pairs. 32848 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr5:141,627,893
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 1047494 as yet unmatched pairs. 30518 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr5:149,981,522
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 1045074 as yet unmatched pairs. 28082 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr5:150,404,680
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 1046572 as yet unmatched pairs. 29574 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:150,942,218
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 1039354 as yet unmatched pairs. 22354 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr5:158,708,159
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 1036534 as yet unmatched pairs. 19520 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr5:171,390,110
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1041560 as yet unmatched pairs. 24519 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:171,400,180
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1042367 as yet unmatched pairs. 25319 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr5:175,968,064
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 1029752 as yet unmatched pairs. 12696 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr5:177,524,304
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 1027202 as yet unmatched pairs. 10131 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr5:179,766,059
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 1024476 as yet unmatched pairs. 7402 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 3s. Last read position: chr5:179,833,041
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 1026559 as yet unmatched pairs. 9474 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr5:180,792,720
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 1019032 as yet unmatched pairs. 1946 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr6:3,153,970
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 1016164 as yet unmatched pairs. 68737 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:7,571,417
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 1014187 as yet unmatched pairs. 66755 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:16,327,940
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 1011288 as yet unmatched pairs. 63841 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr6:26,123,771
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 1008125 as yet unmatched pairs. 60663 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:28,390,665
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 1005387 as yet unmatched pairs. 57919 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr6:30,723,423
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 1003083 as yet unmatched pairs. 55605 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr6:31,631,869
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 1000426 as yet unmatched pairs. 52944 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr6:31,887,053
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 998158 as yet unmatched pairs. 50674 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr6:32,200,699
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 995453 as yet unmatched pairs. 47966 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr6:33,305,307
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 993380 as yet unmatched pairs. 45891 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr6:34,538,351
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 990153 as yet unmatched pairs. 42649 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr6:39,856,265
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 987275 as yet unmatched pairs. 39762 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr6:43,206,332
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 984557 as yet unmatched pairs. 37026 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr6:44,256,778
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 981748 as yet unmatched pairs. 34203 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr6:57,047,222
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 979565 as yet unmatched pairs. 32008 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:75,886,856
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 977407 as yet unmatched pairs. 29837 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr6:88,761,791
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 974472 as yet unmatched pairs. 26895 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr6:106,619,255
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 971855 as yet unmatched pairs. 24266 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr6:111,379,991
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 969600 as yet unmatched pairs. 21996 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr6:127,286,761
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 967495 as yet unmatched pairs. 19872 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:136,605,253
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 964603 as yet unmatched pairs. 16966 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:144,554,700
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 962255 as yet unmatched pairs. 14607 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:151,807,918
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 965147 as yet unmatched pairs. 17493 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr6:151,988,122
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 959528 as yet unmatched pairs. 11851 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr6:157,896,828
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 954297 as yet unmatched pairs. 6602 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr6:160,047,897
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 951516 as yet unmatched pairs. 3811 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr6:168,311,088
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 948742 as yet unmatched pairs. 1025 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 2s. Last read position: chr7:2,360,892
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 945915 as yet unmatched pairs. 66335 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 2s. Last read position: chr7:5,421,199
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 942680 as yet unmatched pairs. 63073 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr7:5,652,426
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 940028 as yet unmatched pairs. 60416 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr7:19,698,483
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 937407 as yet unmatched pairs. 57793 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr7:32,568,970
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 934980 as yet unmatched pairs. 55356 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 3s. Last read position: chr7:44,106,677
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 932582 as yet unmatched pairs. 52946 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 3s. Last read position: chr7:47,291,955
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 929890 as yet unmatched pairs. 50243 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr7:65,979,488
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 927356 as yet unmatched pairs. 47694 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:73,183,204
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 926080 as yet unmatched pairs. 46413 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr7:74,657,997
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 924409 as yet unmatched pairs. 44741 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr7:75,395,490
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 923135 as yet unmatched pairs. 43463 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr7:76,303,806
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 925921 as yet unmatched pairs. 46244 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:80,828,583
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 918539 as yet unmatched pairs. 38856 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:92,457,137
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 916104 as yet unmatched pairs. 36420 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr7:98,192,190
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 913396 as yet unmatched pairs. 33705 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr7:100,064,399
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 911030 as yet unmatched pairs. 31326 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr7:100,688,247
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 908113 as yet unmatched pairs. 28400 records in RAM.
INFO 2026-06-08 08:35:19 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr7:102,501,101
INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 906072 as yet unmatched pairs. 26352 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:102,682,103
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 905119 as yet unmatched pairs. 25393 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr7:108,231,060
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 902588 as yet unmatched pairs. 22851 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr7:127,686,673
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 903236 as yet unmatched pairs. 23479 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr7:128,074,605
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 900687 as yet unmatched pairs. 20924 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr7:130,203,983
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 895273 as yet unmatched pairs. 15501 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr7:137,908,325
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 893580 as yet unmatched pairs. 13789 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr7:139,716,898
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 890842 as yet unmatched pairs. 11048 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr7:143,756,697
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 887757 as yet unmatched pairs. 7961 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:149,860,654
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 885889 as yet unmatched pairs. 6091 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr7:151,490,965
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 883015 as yet unmatched pairs. 3200 records in RAM.
INFO 2026-06-08 08:35:42 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr7:158,734,455
INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 880321 as yet unmatched pairs. 496 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 3s. Last read position: chr8:11,848,097
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 878406 as yet unmatched pairs. 48273 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr8:22,509,190
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 875080 as yet unmatched pairs. 44933 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr8:26,656,286
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 872331 as yet unmatched pairs. 42183 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr8:37,697,993
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 869850 as yet unmatched pairs. 39692 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr8:38,417,327
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 867956 as yet unmatched pairs. 37798 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr8:41,933,354
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 864458 as yet unmatched pairs. 34290 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr8:47,970,613
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 861726 as yet unmatched pairs. 31543 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr8:60,558,895
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 858639 as yet unmatched pairs. 28448 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr8:70,156,294
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 856252 as yet unmatched pairs. 26046 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr8:89,971,208
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 853924 as yet unmatched pairs. 23706 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr8:99,511,496
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 851433 as yet unmatched pairs. 21207 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr8:102,300,000
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 848930 as yet unmatched pairs. 18697 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr8:120,147,902
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 846483 as yet unmatched pairs. 16239 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr8:130,159,894
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 843796 as yet unmatched pairs. 13540 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr8:143,586,754
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 841365 as yet unmatched pairs. 11085 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr8:143,861,268
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 838985 as yet unmatched pairs. 8698 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr8:143,871,183
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 837781 as yet unmatched pairs. 7494 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 3s. Last read position: chr8:144,099,408
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 834228 as yet unmatched pairs. 3936 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 3s. Last read position: chr8:144,723,029
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 831232 as yet unmatched pairs. 934 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr9:5,797,863
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 828837 as yet unmatched pairs. 54820 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr9:19,295,958
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 826398 as yet unmatched pairs. 52364 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr9:33,817,790
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 823758 as yet unmatched pairs. 49714 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr9:35,712,027
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 821155 as yet unmatched pairs. 47105 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr9:65,682,787
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 819007 as yet unmatched pairs. 44939 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:77,283,548
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 816538 as yet unmatched pairs. 42466 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:89,038,134
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 813885 as yet unmatched pairs. 39807 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr9:93,452,233
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 811512 as yet unmatched pairs. 37414 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr9:98,944,171
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 808892 as yet unmatched pairs. 34786 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 76s. Last read position: chr9:109,381,738
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 806474 as yet unmatched pairs. 32360 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr9:113,583,846
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 803503 as yet unmatched pairs. 29387 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr9:121,166,161
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 800552 as yet unmatched pairs. 26433 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr9:125,240,181
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 798297 as yet unmatched pairs. 24168 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr9:128,163,553
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 795157 as yet unmatched pairs. 21025 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr9:128,721,767
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 792517 as yet unmatched pairs. 18382 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr9:130,880,618
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 790875 as yet unmatched pairs. 16718 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr9:132,329,851
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 787233 as yet unmatched pairs. 13071 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr9:134,700,029
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 784564 as yet unmatched pairs. 10381 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr9:136,505,643
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 781418 as yet unmatched pairs. 7228 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr9:137,040,042
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 779345 as yet unmatched pairs. 5152 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr9:137,564,446
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 774974 as yet unmatched pairs. 779 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr10:5,785,849
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 772626 as yet unmatched pairs. 44222 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr10:17,229,433
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 770068 as yet unmatched pairs. 41658 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr10:27,148,960
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 767155 as yet unmatched pairs. 38731 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr10:32,040,399
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 766323 as yet unmatched pairs. 37890 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr10:45,428,683
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 762223 as yet unmatched pairs. 33784 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr10:47,706,246
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 760306 as yet unmatched pairs. 31864 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr10:60,105,905
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 758238 as yet unmatched pairs. 29787 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr10:70,145,389
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 755811 as yet unmatched pairs. 27348 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 3s. Last read position: chr10:73,697,599
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 753428 as yet unmatched pairs. 24959 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr10:78,037,197
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 754555 as yet unmatched pairs. 26067 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr10:87,151,655
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 748797 as yet unmatched pairs. 20297 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr10:93,381,215
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 746459 as yet unmatched pairs. 17944 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 3s. Last read position: chr10:97,445,709
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 743805 as yet unmatched pairs. 15280 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr10:102,033,082
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 741141 as yet unmatched pairs. 12606 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr10:104,315,420
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 738476 as yet unmatched pairs. 9939 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr10:116,921,475
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 736818 as yet unmatched pairs. 8266 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr10:120,889,078
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 733698 as yet unmatched pairs. 5128 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr10:125,807,418
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 731243 as yet unmatched pairs. 2663 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 4s. Last read position: chr11:292,603
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 728439 as yet unmatched pairs. 90886 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr11:614,928
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 725232 as yet unmatched pairs. 87678 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:1,232,744
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 722533 as yet unmatched pairs. 84973 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr11:1,244,865
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 721385 as yet unmatched pairs. 83823 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,037
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 720169 as yet unmatched pairs. 82607 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,564
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 718340 as yet unmatched pairs. 80778 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr11:3,735,260
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 715040 as yet unmatched pairs. 77475 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr11:8,392,576
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 712178 as yet unmatched pairs. 74607 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 3s. Last read position: chr11:10,803,078
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 710526 as yet unmatched pairs. 72937 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr11:18,339,502
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 707116 as yet unmatched pairs. 69518 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr11:32,601,761
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 705203 as yet unmatched pairs. 67600 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:43,780,049
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 702114 as yet unmatched pairs. 64501 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr11:46,542,843
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 699681 as yet unmatched pairs. 62059 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr11:47,840,498
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 696707 as yet unmatched pairs. 59082 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr11:59,151,978
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 694369 as yet unmatched pairs. 56742 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr11:61,796,181
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 691274 as yet unmatched pairs. 53643 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr11:62,213,767
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 689854 as yet unmatched pairs. 52222 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr11:62,528,700
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 687659 as yet unmatched pairs. 50026 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr11:62,648,239
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 684070 as yet unmatched pairs. 46434 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr11:64,234,834
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 681227 as yet unmatched pairs. 43582 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr11:65,115,945
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 678856 as yet unmatched pairs. 41205 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr11:65,598,479
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 675576 as yet unmatched pairs. 37904 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr11:66,057,322
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 672463 as yet unmatched pairs. 34788 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr11:67,250,328
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 669674 as yet unmatched pairs. 31998 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr11:68,348,160
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 666781 as yet unmatched pairs. 29105 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr11:70,417,021
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 663892 as yet unmatched pairs. 26211 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr11:72,685,986
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 661146 as yet unmatched pairs. 23457 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr11:75,404,678
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 660125 as yet unmatched pairs. 22424 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr11:85,664,691
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 655829 as yet unmatched pairs. 18125 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr11:101,127,975
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 653403 as yet unmatched pairs. 15680 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr11:103,303,096
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 650618 as yet unmatched pairs. 12888 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr11:114,251,479
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 648197 as yet unmatched pairs. 10459 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr11:118,474,164
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 645583 as yet unmatched pairs. 7837 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr11:119,312,076
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 642990 as yet unmatched pairs. 5238 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr11:126,203,382
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 640489 as yet unmatched pairs. 2735 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:17,464
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 637756 as yet unmatched pairs. 74722 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr12:5,045,259
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 635207 as yet unmatched pairs. 72168 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr12:6,600,294
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 632780 as yet unmatched pairs. 69734 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr12:7,081,045
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 629818 as yet unmatched pairs. 66769 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr12:10,702,007
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 627839 as yet unmatched pairs. 64786 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:19,287,351
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 625463 as yet unmatched pairs. 62405 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr12:27,724,048
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 622873 as yet unmatched pairs. 59801 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr12:40,944,150
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 620190 as yet unmatched pairs. 57111 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr12:48,777,631
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 617788 as yet unmatched pairs. 54707 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr12:49,128,615
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 615036 as yet unmatched pairs. 51954 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr12:50,441,634
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 612765 as yet unmatched pairs. 49678 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr12:52,950,334
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 610520 as yet unmatched pairs. 47428 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr12:53,462,513
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 609027 as yet unmatched pairs. 45931 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 3s. Last read position: chr12:54,342,236
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 605052 as yet unmatched pairs. 41951 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 3s. Last read position: chr12:56,159,699
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 602966 as yet unmatched pairs. 39861 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr12:56,664,390
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 600611 as yet unmatched pairs. 37502 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr12:57,104,503
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 600483 as yet unmatched pairs. 37373 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr12:57,526,266
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 594765 as yet unmatched pairs. 31655 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr12:65,243,410
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 592326 as yet unmatched pairs. 29208 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr12:71,559,637
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 591287 as yet unmatched pairs. 28164 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr12:89,599,117
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 587652 as yet unmatched pairs. 24509 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr12:100,315,629
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 585528 as yet unmatched pairs. 22381 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr12:106,997,502
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 582964 as yet unmatched pairs. 19809 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr12:111,485,738
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 580626 as yet unmatched pairs. 17463 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr12:113,271,623
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 577860 as yet unmatched pairs. 14697 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr12:120,199,434
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 576354 as yet unmatched pairs. 13175 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,270
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 572611 as yet unmatched pairs. 9431 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr12:123,804,862
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 569630 as yet unmatched pairs. 6445 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,919
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 567518 as yet unmatched pairs. 4324 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr12:132,842,984
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 563904 as yet unmatched pairs. 706 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr13:21,140,624
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 561444 as yet unmatched pairs. 19409 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr13:28,672,353
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 559549 as yet unmatched pairs. 17507 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr13:40,267,142
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 556552 as yet unmatched pairs. 14506 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr13:45,338,746
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 556621 as yet unmatched pairs. 14571 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr13:52,024,011
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 551558 as yet unmatched pairs. 9493 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr13:95,641,483
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 549244 as yet unmatched pairs. 7171 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr13:110,170,606
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 546725 as yet unmatched pairs. 4638 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr13:113,024,659
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 543987 as yet unmatched pairs. 1884 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr14:21,082,310
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 541106 as yet unmatched pairs. 47684 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr14:23,059,092
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 538868 as yet unmatched pairs. 45442 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr14:24,241,120
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 535813 as yet unmatched pairs. 42387 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr14:33,800,243
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 532985 as yet unmatched pairs. 39547 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr14:49,586,629
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 531052 as yet unmatched pairs. 37605 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr14:55,063,270
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 528608 as yet unmatched pairs. 35151 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr14:63,986,519
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 526057 as yet unmatched pairs. 32590 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr14:67,473,694
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 523267 as yet unmatched pairs. 29799 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr14:70,712,641
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 520480 as yet unmatched pairs. 27004 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr14:74,781,581
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 518237 as yet unmatched pairs. 24752 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr14:88,391,379
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 515450 as yet unmatched pairs. 21956 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr14:93,220,323
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 512874 as yet unmatched pairs. 19353 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr14:100,366,813
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 510175 as yet unmatched pairs. 16645 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr14:102,376,779
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 507302 as yet unmatched pairs. 13770 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 2s. Last read position: chr14:104,773,960
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 504928 as yet unmatched pairs. 11388 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr14:104,950,828
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 502804 as yet unmatched pairs. 9262 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,191
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 502558 as yet unmatched pairs. 9016 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 2s. Last read position: chr14:105,741,515
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 516376 as yet unmatched pairs. 22829 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 3s. Last read position: chr14:105,742,184
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 499302 as yet unmatched pairs. 5753 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,684
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 493963 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr15:29,716,678
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 491950 as yet unmatched pairs. 40491 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr15:34,387,849
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 489758 as yet unmatched pairs. 38299 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr15:40,414,932
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 487495 as yet unmatched pairs. 36023 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr15:41,761,746
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 487138 as yet unmatched pairs. 35665 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr15:43,526,310
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 482433 as yet unmatched pairs. 30959 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr15:45,069,033
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 480294 as yet unmatched pairs. 28817 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr15:52,376,501
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 477737 as yet unmatched pairs. 26258 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr15:59,650,643
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 475420 as yet unmatched pairs. 23932 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr15:63,601,402
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 472708 as yet unmatched pairs. 21211 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr15:66,499,428
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 470329 as yet unmatched pairs. 18828 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 2s. Last read position: chr15:72,206,728
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 467924 as yet unmatched pairs. 16418 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr15:74,620,161
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 464584 as yet unmatched pairs. 13076 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr15:77,114,662
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 461977 as yet unmatched pairs. 10459 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr15:82,523,993
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 459459 as yet unmatched pairs. 7940 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,926
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 457857 as yet unmatched pairs. 6336 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr15:90,271,652
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 455056 as yet unmatched pairs. 3534 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr15:99,255,990
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 452458 as yet unmatched pairs. 933 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr16:574,249
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 449801 as yet unmatched pairs. 75696 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr16:1,564,025
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 446281 as yet unmatched pairs. 72168 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 2s. Last read position: chr16:2,088,300
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 443057 as yet unmatched pairs. 68940 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 2s. Last read position: chr16:2,757,510
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 440861 as yet unmatched pairs. 66743 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,545
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 438110 as yet unmatched pairs. 63992 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr16:3,727,884
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 434777 as yet unmatched pairs. 60658 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr16:8,900,539
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 432349 as yet unmatched pairs. 58229 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr16:14,261,225
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 430741 as yet unmatched pairs. 56619 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr16:15,104,620
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 428319 as yet unmatched pairs. 54196 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr16:15,756,348
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 426348 as yet unmatched pairs. 52221 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr16:16,347,441
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 424392 as yet unmatched pairs. 50261 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr16:18,350,764
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 424108 as yet unmatched pairs. 49977 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr16:18,833,068
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 422156 as yet unmatched pairs. 48025 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr16:21,404,816
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 422856 as yet unmatched pairs. 48723 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr16:21,835,720
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 419760 as yet unmatched pairs. 45625 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr16:22,469,064
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 418054 as yet unmatched pairs. 43919 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,048
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 418255 as yet unmatched pairs. 44119 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr16:28,106,115
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 415782 as yet unmatched pairs. 41639 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr16:28,834,161
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 414438 as yet unmatched pairs. 40290 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr16:29,461,868
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 413527 as yet unmatched pairs. 39379 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr16:29,840,297
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 411435 as yet unmatched pairs. 37286 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,421
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 409022 as yet unmatched pairs. 34872 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr16:30,723,649
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 407641 as yet unmatched pairs. 33489 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,082
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 404539 as yet unmatched pairs. 30378 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr16:48,347,546
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 402658 as yet unmatched pairs. 28486 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr16:55,482,953
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 400611 as yet unmatched pairs. 26432 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr16:57,985,520
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 396685 as yet unmatched pairs. 22505 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 2s. Last read position: chr16:67,234,081
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 393819 as yet unmatched pairs. 19635 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 2s. Last read position: chr16:68,860,151
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 390990 as yet unmatched pairs. 16800 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr16:70,555,084
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 388882 as yet unmatched pairs. 14690 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr16:72,958,300
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 385908 as yet unmatched pairs. 11712 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 2s. Last read position: chr16:81,082,831
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 383715 as yet unmatched pairs. 9515 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr16:87,412,835
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 380631 as yet unmatched pairs. 6428 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr16:89,288,445
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 377459 as yet unmatched pairs. 3252 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr16:90,031,451
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 374386 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 3s. Last read position: chr17:1,521,635
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 372147 as yet unmatched pairs. 104020 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 2s. Last read position: chr17:2,991,371
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 368992 as yet unmatched pairs. 100863 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr17:4,896,224
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 366252 as yet unmatched pairs. 98118 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 2s. Last read position: chr17:7,224,874
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 364350 as yet unmatched pairs. 96213 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:7,557,296
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 360816 as yet unmatched pairs. 92679 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 2s. Last read position: chr17:8,143,678
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 358116 as yet unmatched pairs. 89970 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 2s. Last read position: chr17:15,613,773
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 355428 as yet unmatched pairs. 87281 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:17,797,613
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 353081 as yet unmatched pairs. 84931 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:19,780,490
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 350193 as yet unmatched pairs. 82039 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:28,634,885
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 348305 as yet unmatched pairs. 80143 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:30,185,314
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 345003 as yet unmatched pairs. 76837 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 2s. Last read position: chr17:32,446,976
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 342544 as yet unmatched pairs. 74374 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:36,334,217
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 340138 as yet unmatched pairs. 71968 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:38,197,544
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 339219 as yet unmatched pairs. 71049 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr17:39,409,473
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 336488 as yet unmatched pairs. 68316 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr17:39,725,346
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 334369 as yet unmatched pairs. 66197 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:40,637,547
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 331035 as yet unmatched pairs. 62860 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr17:42,487,306
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 327972 as yet unmatched pairs. 59795 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:43,532,797
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 325768 as yet unmatched pairs. 57588 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:44,355,022
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 322220 as yet unmatched pairs. 54040 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:46,296,011
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 319543 as yet unmatched pairs. 51362 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:47,978,870
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 318007 as yet unmatched pairs. 49825 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,596
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 317088 as yet unmatched pairs. 48902 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,418
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 315237 as yet unmatched pairs. 47048 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,960
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 314133 as yet unmatched pairs. 45936 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,633
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 310919 as yet unmatched pairs. 42721 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,676,371
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 303199 as yet unmatched pairs. 35001 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:58,007,028
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 300212 as yet unmatched pairs. 32014 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr17:59,680,926
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 301909 as yet unmatched pairs. 33697 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:62,578,476
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 295028 as yet unmatched pairs. 26814 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:64,800,528
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 292443 as yet unmatched pairs. 24229 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,456
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 292555 as yet unmatched pairs. 24336 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:75,039,036
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 287814 as yet unmatched pairs. 19589 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:75,779,046
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 284811 as yet unmatched pairs. 16586 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 2s. Last read position: chr17:77,320,203
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 281597 as yet unmatched pairs. 13372 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:80,108,577
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 278698 as yet unmatched pairs. 10473 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:81,457,504
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 275864 as yet unmatched pairs. 7627 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr17:81,859,333
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 273944 as yet unmatched pairs. 5707 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:82,316,293
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 269714 as yet unmatched pairs. 1477 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr18:5,891,654
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 267016 as yet unmatched pairs. 13689 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr18:20,951,292
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 264797 as yet unmatched pairs. 11466 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr18:31,931,396
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 262020 as yet unmatched pairs. 8689 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr18:47,171,473
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 259824 as yet unmatched pairs. 6487 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr18:58,918,854
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 257582 as yet unmatched pairs. 4244 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr18:75,202,232
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 254815 as yet unmatched pairs. 1476 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 3s. Last read position: chr19:621,513
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 252183 as yet unmatched pairs. 104639 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 3s. Last read position: chr19:1,112,451
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 249191 as yet unmatched pairs. 101642 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr19:1,556,079
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 245969 as yet unmatched pairs. 98420 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr19:2,321,589
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 242569 as yet unmatched pairs. 95019 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr19:3,984,168
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 242238 as yet unmatched pairs. 94687 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr19:5,243,901
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 236434 as yet unmatched pairs. 88883 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:6,421,312
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 234107 as yet unmatched pairs. 86555 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:7,933,497
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 230507 as yet unmatched pairs. 82949 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:8,909,413
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 228977 as yet unmatched pairs. 81419 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:8,953,422
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 226662 as yet unmatched pairs. 79104 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:8,966,620
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 224075 as yet unmatched pairs. 76517 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr19:10,320,901
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 221216 as yet unmatched pairs. 73657 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr19:11,024,354
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 218349 as yet unmatched pairs. 70790 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr19:11,904,754
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 215629 as yet unmatched pairs. 68070 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr19:13,104,962
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 212620 as yet unmatched pairs. 65059 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 2s. Last read position: chr19:14,563,668
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 209941 as yet unmatched pairs. 62380 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr19:15,265,499
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 207599 as yet unmatched pairs. 60038 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr19:17,235,923
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 204193 as yet unmatched pairs. 56632 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr19:18,281,271
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 201063 as yet unmatched pairs. 53501 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr19:19,025,122
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 198207 as yet unmatched pairs. 50645 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 2s. Last read position: chr19:32,453,191
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 195449 as yet unmatched pairs. 47887 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr19:35,545,773
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 192370 as yet unmatched pairs. 44803 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr19:38,081,602
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 189728 as yet unmatched pairs. 42161 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 3s. Last read position: chr19:39,383,756
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 186774 as yet unmatched pairs. 39205 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr19:40,233,778
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 186407 as yet unmatched pairs. 38837 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 2s. Last read position: chr19:41,305,773
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 181393 as yet unmatched pairs. 33823 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr19:42,291,407
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 178834 as yet unmatched pairs. 31264 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:44,891,434
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 175460 as yet unmatched pairs. 27887 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:45,891,164
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 172465 as yet unmatched pairs. 24888 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr19:48,230,510
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 169454 as yet unmatched pairs. 21875 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 173s. Last read position: chr19:49,108,212
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 166991 as yet unmatched pairs. 19411 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 2s. Last read position: chr19:49,601,538
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 163486 as yet unmatched pairs. 15906 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 2s. Last read position: chr19:50,281,627
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 160559 as yet unmatched pairs. 12979 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 3s. Last read position: chr19:52,613,575
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 158282 as yet unmatched pairs. 10702 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr19:54,256,183
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 155320 as yet unmatched pairs. 7740 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 3s. Last read position: chr19:55,518,099
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 152286 as yet unmatched pairs. 4706 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 2s. Last read position: chr19:57,874,502
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 149628 as yet unmatched pairs. 2043 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 3s. Last read position: chr20:1,372,122
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 147604 as yet unmatched pairs. 33873 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 3s. Last read position: chr20:5,100,814
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 144326 as yet unmatched pairs. 30595 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 2s. Last read position: chr20:18,142,695
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 141820 as yet unmatched pairs. 28087 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 3s. Last read position: chr20:25,476,782
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 138820 as yet unmatched pairs. 25081 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 3s. Last read position: chr20:34,708,745
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 136115 as yet unmatched pairs. 22375 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 3s. Last read position: chr20:36,496,805
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 133870 as yet unmatched pairs. 20127 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chr20:41,174,000
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 131284 as yet unmatched pairs. 17540 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 1s. Last read position: chr20:45,469,805
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 131011 as yet unmatched pairs. 17266 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:23:33s. Time for last 1,000,000: 2s. Last read position: chr20:48,969,257
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 125473 as yet unmatched pairs. 11728 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 1s. Last read position: chr20:57,393,278
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 122735 as yet unmatched pairs. 8989 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 2s. Last read position: chr20:62,309,793
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 119794 as yet unmatched pairs. 6045 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chr20:63,203,127
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 116354 as yet unmatched pairs. 2605 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr21:6,492,105
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 113805 as yet unmatched pairs. 23875 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,780
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 112159 as yet unmatched pairs. 22221 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,595
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 110545 as yet unmatched pairs. 20605 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 2s. Last read position: chr21:29,327,197
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 108330 as yet unmatched pairs. 18388 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 2s. Last read position: chr21:34,073,608
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 105344 as yet unmatched pairs. 15402 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 2s. Last read position: chr21:39,269,933
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 103025 as yet unmatched pairs. 13083 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 2s. Last read position: chr21:43,803,424
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 99995 as yet unmatched pairs. 10053 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 2s. Last read position: chr21:45,475,485
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 99320 as yet unmatched pairs. 9378 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 3s. Last read position: chr21:45,509,569
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 96566 as yet unmatched pairs. 6624 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 3s. Last read position: chr21:46,334,565
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 90847 as yet unmatched pairs. 897 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 3s. Last read position: chr22:20,115,680
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 88015 as yet unmatched pairs. 41207 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 1s. Last read position: chr22:23,179,908
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 85410 as yet unmatched pairs. 38602 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 1s. Last read position: chr22:23,895,070
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 82025 as yet unmatched pairs. 35217 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 2s. Last read position: chr22:28,742,146
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 79483 as yet unmatched pairs. 32675 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 2s. Last read position: chr22:29,292,151
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 81164 as yet unmatched pairs. 34356 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 3s. Last read position: chr22:30,622,968
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 74487 as yet unmatched pairs. 27679 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 2s. Last read position: chr22:35,761,230
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 71509 as yet unmatched pairs. 24701 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chr22:37,024,387
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 68691 as yet unmatched pairs. 21883 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 2s. Last read position: chr22:38,247,840
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 66170 as yet unmatched pairs. 19360 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 2s. Last read position: chr22:40,021,322
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 62900 as yet unmatched pairs. 16090 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:24:31s. Time for last 1,000,000: 3s. Last read position: chr22:41,577,841
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 60538 as yet unmatched pairs. 13728 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 2s. Last read position: chr22:43,924,054
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 57579 as yet unmatched pairs. 10769 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:24:36s. Time for last 1,000,000: 1s. Last read position: chr22:45,563,061
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 56742 as yet unmatched pairs. 9931 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 2s. Last read position: chr22:50,248,404
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 51080 as yet unmatched pairs. 4269 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:24:40s. Time for last 1,000,000: 2s. Last read position: chr22:50,579,339
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 47879 as yet unmatched pairs. 1068 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:24:43s. Time for last 1,000,000: 2s. Last read position: chrX:3,905,975
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 44764 as yet unmatched pairs. 36377 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:24:46s. Time for last 1,000,000: 3s. Last read position: chrX:18,941,595
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 42519 as yet unmatched pairs. 34123 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 2s. Last read position: chrX:40,055,428
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 40668 as yet unmatched pairs. 32272 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 3s. Last read position: chrX:45,020,641
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 37768 as yet unmatched pairs. 29372 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 2s. Last read position: chrX:48,894,216
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 34860 as yet unmatched pairs. 26464 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 2s. Last read position: chrX:53,431,423
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 32448 as yet unmatched pairs. 24052 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 2s. Last read position: chrX:64,189,886
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 29789 as yet unmatched pairs. 21393 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:25:01s. Time for last 1,000,000: 2s. Last read position: chrX:71,554,580
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 27655 as yet unmatched pairs. 19259 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:25:04s. Time for last 1,000,000: 2s. Last read position: chrX:77,683,414
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 25109 as yet unmatched pairs. 16713 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:25:07s. Time for last 1,000,000: 2s. Last read position: chrX:103,077,643
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 22553 as yet unmatched pairs. 14157 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:25:10s. Time for last 1,000,000: 3s. Last read position: chrX:119,618,759
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 20087 as yet unmatched pairs. 11691 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 2s. Last read position: chrX:135,546,390
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 17580 as yet unmatched pairs. 9184 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:25:14s. Time for last 1,000,000: 1s. Last read position: chrX:153,767,730
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 15174 as yet unmatched pairs. 6777 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:25:16s. Time for last 1,000,000: 1s. Last read position: chrX:154,357,579
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 12433 as yet unmatched pairs. 4036 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:25:19s. Time for last 1,000,000: 2s. Last read position: chrX:154,469,699
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 9462 as yet unmatched pairs. 1065 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:25:21s. Time for last 1,000,000: 2s. Last read position: GL000220.1:114,202
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 8043 as yet unmatched pairs. 1352 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:25:22s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,275
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 6693 as yet unmatched pairs. 2 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:25:24s. Time for last 1,000,000: 1s. Last read position: KI270733.1:134,866
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 299 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 565685410 records. 0 pairs never matched.
INFO 2026-06-08 08:53:02 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140520; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:53:02 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:53:09 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:53:09 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder Large duplicate set. size = 1426
INFO 2026-06-08 08:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,371
INFO 2026-06-08 08:53:47 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 08:53:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,173
INFO 2026-06-08 08:54:25 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:54:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,633
INFO 2026-06-08 08:55:23 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:55:23 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:57:00 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:57:02 MarkDuplicates After generateDuplicateIndexes freeMemory: 203993136; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:57:02 MarkDuplicates Marking 294798118 records as duplicates.
INFO 2026-06-08 08:57:02 MarkDuplicates Found 20738292 optical duplicate clusters.
INFO 2026-06-08 08:57:02 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:57:30 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:27s. Time for last 10,000,000: 27s. Last read position: chr1:24,660,755
INFO 2026-06-08 08:57:57 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:55s. Time for last 10,000,000: 27s. Last read position: chr1:54,043,488
INFO 2026-06-08 08:58:24 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 27s. Last read position: chr1:145,977,137
INFO 2026-06-08 08:58:53 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 28s. Last read position: chr1:156,592,180
INFO 2026-06-08 08:59:21 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 28s. Last read position: chr1:223,625,797
INFO 2026-06-08 08:59:51 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:49s. Time for last 10,000,000: 29s. Last read position: chr2:32,916,263
INFO 2026-06-08 09:00:19 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 27s. Last read position: chr2:74,367,995
INFO 2026-06-08 09:00:47 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 28s. Last read position: chr2:113,217,544
INFO 2026-06-08 09:01:15 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 27s. Last read position: chr2:197,418,511
INFO 2026-06-08 09:01:42 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:04:40s. Time for last 10,000,000: 27s. Last read position: chr3:4,983,470
INFO 2026-06-08 09:02:09 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 27s. Last read position: chr3:51,959,248
INFO 2026-06-08 09:02:37 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:05:35s. Time for last 10,000,000: 27s. Last read position: chr3:142,547,820
INFO 2026-06-08 09:03:07 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:06:05s. Time for last 10,000,000: 29s. Last read position: chr4:15,003,826
INFO 2026-06-08 09:03:35 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 28s. Last read position: chr4:145,138,603
INFO 2026-06-08 09:04:03 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 28s. Last read position: chr5:75,426,371
INFO 2026-06-08 09:04:31 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 27s. Last read position: chr5:150,404,680
INFO 2026-06-08 09:04:57 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:07:55s. Time for last 10,000,000: 25s. Last read position: chr6:3,153,970
INFO 2026-06-08 09:05:25 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 28s. Last read position: chr6:34,538,351
INFO 2026-06-08 09:05:53 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 28s. Last read position: chr6:136,605,253
INFO 2026-06-08 09:06:20 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 26s. Last read position: chr7:19,698,483
INFO 2026-06-08 09:06:47 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:09:44s. Time for last 10,000,000: 27s. Last read position: chr7:92,457,137
INFO 2026-06-08 09:07:14 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:10:11s. Time for last 10,000,000: 27s. Last read position: chr7:137,908,325
INFO 2026-06-08 09:07:41 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:10:38s. Time for last 10,000,000: 27s. Last read position: chr8:38,417,327
INFO 2026-06-08 09:08:08 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:11:06s. Time for last 10,000,000: 27s. Last read position: chr8:143,586,754
INFO 2026-06-08 09:08:35 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 26s. Last read position: chr9:77,283,548
INFO 2026-06-08 09:09:03 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 27s. Last read position: chr9:130,880,618
INFO 2026-06-08 09:09:30 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 27s. Last read position: chr10:45,428,683
INFO 2026-06-08 09:09:56 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 26s. Last read position: chr10:104,315,420
INFO 2026-06-08 09:10:22 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 25s. Last read position: chr11:3,735,260
INFO 2026-06-08 09:10:48 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:13:46s. Time for last 10,000,000: 26s. Last read position: chr11:62,213,767
INFO 2026-06-08 09:11:15 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:14:12s. Time for last 10,000,000: 26s. Last read position: chr11:72,685,986
INFO 2026-06-08 09:11:42 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:14:40s. Time for last 10,000,000: 27s. Last read position: chr12:5,045,259
INFO 2026-06-08 09:12:09 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:15:06s. Time for last 10,000,000: 26s. Last read position: chr12:52,950,334
INFO 2026-06-08 09:12:35 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:15:33s. Time for last 10,000,000: 26s. Last read position: chr12:100,315,629
INFO 2026-06-08 09:13:03 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:16:01s. Time for last 10,000,000: 27s. Last read position: chr13:28,672,353
INFO 2026-06-08 09:13:31 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:16:29s. Time for last 10,000,000: 28s. Last read position: chr14:33,800,243
INFO 2026-06-08 09:14:00 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:16:57s. Time for last 10,000,000: 28s. Last read position: chr14:102,376,779
INFO 2026-06-08 09:14:26 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:17:24s. Time for last 10,000,000: 26s. Last read position: chr15:41,761,746
INFO 2026-06-08 09:14:53 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:17:50s. Time for last 10,000,000: 26s. Last read position: chr15:82,523,993
INFO 2026-06-08 09:15:19 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:18:16s. Time for last 10,000,000: 25s. Last read position: chr16:8,900,539
INFO 2026-06-08 09:15:46 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:18:43s. Time for last 10,000,000: 26s. Last read position: chr16:22,535,048
INFO 2026-06-08 09:16:12 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:19:10s. Time for last 10,000,000: 26s. Last read position: chr16:57,985,520
INFO 2026-06-08 09:16:39 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:19:36s. Time for last 10,000,000: 26s. Last read position: chr17:2,991,371
INFO 2026-06-08 09:17:06 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:20:03s. Time for last 10,000,000: 26s. Last read position: chr17:32,446,976
INFO 2026-06-08 09:17:32 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:20:30s. Time for last 10,000,000: 26s. Last read position: chr17:47,978,870
INFO 2026-06-08 09:17:58 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:20:56s. Time for last 10,000,000: 26s. Last read position: chr17:68,515,456
INFO 2026-06-08 09:18:25 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:21:23s. Time for last 10,000,000: 26s. Last read position: chr18:31,931,396
INFO 2026-06-08 09:18:51 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:21:49s. Time for last 10,000,000: 26s. Last read position: chr19:6,421,312
INFO 2026-06-08 09:19:18 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:22:16s. Time for last 10,000,000: 26s. Last read position: chr19:15,265,499
INFO 2026-06-08 09:19:46 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:22:43s. Time for last 10,000,000: 27s. Last read position: chr19:42,291,407
INFO 2026-06-08 09:20:12 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:23:10s. Time for last 10,000,000: 26s. Last read position: chr19:57,874,502
INFO 2026-06-08 09:20:40 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:23:38s. Time for last 10,000,000: 27s. Last read position: chr20:57,393,278
INFO 2026-06-08 09:21:05 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:24:03s. Time for last 10,000,000: 25s. Last read position: chr21:45,475,485
INFO 2026-06-08 09:21:31 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:24:28s. Time for last 10,000,000: 25s. Last read position: chr22:37,024,387
INFO 2026-06-08 09:21:57 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:24:54s. Time for last 10,000,000: 26s. Last read position: chrX:40,055,428
INFO 2026-06-08 09:22:24 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:25:21s. Time for last 10,000,000: 27s. Last read position: chrX:153,767,730
INFO 2026-06-08 09:22:50 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:22:50 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:22:50 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:22:50 MarkDuplicates Before output close freeMemory: 203973248; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:22:50 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:22:51 MarkDuplicates After output close freeMemory: 104204368; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:22:51 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 55.77 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory